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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7513#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 864 fasta sequence
[ACCAGACGACAACACACACACAAAAAAAAAAAAGAAGAGAAAAACCGAACGAAAATCCCCTCGCGCAGACGACTACTACATCCTTCTCGTCTCATCCCGTCGACCCGCCGCCGCCTCAATCTCGAAGCCTCGGCGAGGCTAGGGTTTCTGCGTCTCCATGGGCTCTAAGAAGCGGTCGCCTCAGCATCCGGCCGCCGCGGCGCCCCCTCCCGCCGTCGGCGGCGGCGGCGGCGGCGAGGTCTCCGGCGATGGTGGCGCCTCGACGGCGAACGGGCCGGTGGTGCCGAAGCCGTCGGAGGTGGCGCCGTTCCTGACGAAGGTGTACGACATGGTCTCGGACCCCGCGACCGACAACGTTATCTCGTGGGCCGAGGGCGGCGGCAGCTTCGTGATCTGGGACTCGCACGCCTTCGAGCGCGACCTCCACAGGCACTTCAAGCACAGCAATTTCACCAGCTTCATACGCCAGCTCAACACCTATGGATTTCGTAAAGTTCACCCTGATAGATGGGAGTGGGCCAATGAAGGTTTTATTATGGGCCAAAAACATCTTCTGAAGACCATTAAGAGGAGGAAGAAGTCTTCTCAGGAATCACCTAGCGAGATACAGAAGGCGCCTGTCAAAACTGCACCTGGTACTGAAAATATTGAGATAGGAAAATATGGTGGCCTTGAAAAGGAGGTTGAAACCCTTAAGAGGGATAAAGCTCTTCTCATGCAGCAGCTTGTAGATCTCAGGCACTACCAGCAAACATCTAACCTTGAAGTGCAGAATTTAATTGAACGGCTTCAAGTAATGGAACAGAACCAGCAGCAGATGATGGCACTTCTAGCAATCGTTGTCCAGAATCCTAGTTTTCTCAA]
[+] EMBL AK072571 [ACCAGACGACAACACACACACAAAAAAAAAAAAGAAGAGAAAAACCGAACGAAAATCCCCTCGCGCAGACGACTACTACATCCTTCTCGTCTCATCCCGTCGACCCGCCGCCGCCTCAATCTCGAAGCCTCGGCGAGGCTAGGGTTTCTGCGTCTCCATGGGCTCTAAGAAGCGGTCGCCTCAGCATCCGGCCGCCGCGGCGCCCCCTCCCGCCGTCGGCGGCGGCGGCGGCGGCGAGGTCTCCGGCGATGGTGGCGCCTCGACGGCGAACGGGCCGGTGGTGCCGAAGCCGTCGGAGGTGGCGCCGTTCCTGACGAAGGTGTACGACATGGTATCGGACCCCGCGACCGACAACGTTATCTCGTGGGCCGAGGGCGGCGGCAGCTTCGTGATCTGGGACTCGCACGCCTTCGAGCGCGACCTCCACAGGCACTTCAAGCACAGCAATTTCACCAGCTTCATACGCCAGCTCAACACCTATGGATTTCGTAAAGTTCACCCTGATAGATGGGAGTGGGCCAATGAAGGTTTTATTATGGGCCAAAAACATCTTCTGAAGACCATTAAGAGGAGGAAGAAGTCTTCTCAGGAATCACCTAGCGAGATACAGAAGGCGCCTGTCAAAACTGCACCTGGTACTGAAAATATTGAGATAGGAAAATATGGTGGCCTTGAAAAGGAGGTTGAAACCCTTAAGAGGGATAAAGCTCTTCTCATGCAGCAGCTTGTAGATCTCAGGCACTACCAGCAAACATCTAACCTTGAAGTGCAGAATTTAATTGAACGGCTTCAAGTAATGGAACAGAACCAGCAGCAGATGATGGCACTTCTAGCAATCGTTGTCCAGAATCCTAGTTTTCTCAA]
[+] EMBL AY344490 [ AGACGACTACTACATCCTTCTCGTCTCATCCCGTCGACCCGCCGCCGCCTCAATCTCGAAGCCTCGGCGAGGCTAGGGTTTCTGCGTCTCCATGGGCTCTAAGAAGCGGTCGCCTCAGCATCCGGCCGCCGCGGCGCCCCCTCCCGCCGTCGGCGGCGGCGGCGGCGGCGAGGTCTCCGGCGATGGTGGCGCCTCGACGGCGAACGGGCCGGTGGTGCCGAAGCCGTCGGAGGTGGCGCCGTTCCTGACGAAGGTGTACGACATGGTCTCGGACCCCGCGACCGACAACGTTATCTCGTGGGCCGAGGGCGGCGGCAGCTTCGTGATCTGGGACTCGCACGCCTTCGAGCGCGACCTCCACAGGCACTTCAAGCACAGCAATTTCACCAGCTTCATACGCCAGCTCAACACCTATGGATTTCGTAAAGTTCACCCTGATAGATGGGAGTGGGCCAATGAAGGTTTTATTATGGGCCAAAAACATCTTCTGAAGACCATTAAGAGGAGGAAGAAGTCTTCTCAGGAATCACCTAGCGAGATACAGAAGGCGCCTGTCAAAACTGCACCTGGTACTGAAAATATTGAGATAGGAAAATATGGTGGCCTTGAAAAGGAGGTTGAAACCCTTAAGAGGGATAAAGCTCTTCTCATGCAGCAGCTTGTAGATCTCAGGCACTACCAGCAAACATCTAACCTTGAAGTGCAGAATTTAATTGAACGGCTTCAAGTAATGGAACAGAACCAGCAGCAGATGATGGCACTTCTAGCAATCGTTGTCCAGAATCCTAGTTTTCTCAA]
[+] EMBL CB663982 [ GAAGCCTCGGCGAGGCTAGGGTTTCTGCGTCTCCATGGGCTCTAAGAAGCGGTCGCCTCAGCATCCGGCCGCCGCGGCGCCCCCTCCCGCCGTCGGCGGCGGCGGCGGCGGCGAGGTCTCCGGCGATGGTGGCGCCTCGACGGCGAACGGGCCGGTGGTGCCGAAGCCGTCGGAGGTGGCGCCGTTCCTGACGAAGGTGTACGACATGGTCTCGGACCCCGCGACCGACAACGTTATCTCGTGGGCCGAGGGCGGCGGCAGCTTCGTGATCTGGGACTCGCACGCCTTCGAGCGCGACCTCCACAGGCACTTCAAGCACAGCAATTTCACCAGCTTCATACGCCAGCTCAACACCTATGGATTTCGTAAAGTTCACCCTGATAGATGGGAGTGGGCCAATGAAGGTTTTATTATGGGCCAAAAACATCTTCTGAAGACCATTAAGAGGAGGAAGAAGTCTTCTCAGGAATCACCTAGCGAGATACAGAAGGCGCCTGTCAAAACTGCACCTGGTACTGAAAATATTGAGATAGGAAAATATGGTGGCCTTGAAAAGGAGGTTGAAACCCTTACGAGGGATAAAGCTCTTCTCATGC ]
consensusID : consensus_7513#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 830 fasta sequence
[AAAAAAAAAAAGAAGAGAAAAACCGAACGAAAATCCCCTCGCGCAGACGACTACTACATCCTTCTCGTCTCATCCCGTCGACCCGCCGCCGCCTCAATCTCGAAGCCTCGGCGAGGCTAGGGTTTCTGCGTCTCCATGGGCTCTAAGAAGCGGTCGCCTCAGCATCCGGCCGCCGCGGCGCCCCCTCCCGCCGTCGGCGGCGGCGGCGGCGGCGAGGTCTCCGGCGATGGTGGCGCCTCGACGGCGAACGGGCCGGTGGTGCCGAAGCCGTCGGAGGTGGCGCCGTTCCTGACGAAGGTGTACGACATGGTCTCGGACCCCGCGACCGACAACGTTATCTCGTGGGCCGAGGGCGGCGGCAGCTTCGTGATCTGGGACTCGCACGCCTTCGAGCGCGACCTCCACAGGCACTTCAAGCACAGCAATTTCACCAGCTTCATACGCCAGCTCAACACCTATTTCACCCTGATAGATGGGAGTGGGCCAATGAAGGTTTTATTATGGGCCAAAAACATCTTCTGAAGACCATTAAGAGGAGGAAGAAGTCTTCTCAGGAATCACCTAGCGAGATACAGAAGGCGCCTGTCAAAACTGCACCTGGTACTGAAAATATTGAGATAGGAAAATATGGTGGCCTTGAAAAGGAGGTTGAAACCCTTAAGAGGGATAAAGCTCTTCTCATGCAGCAGCTTGTAGATCTCAGGCACTACCAGCAAACATCTAACCTTGAAGTGCAGAATTTAATTGAACGGCTTCAAGTAATGGAACAGAACCAGCAGCAGATGATGGCACTTCTAGCAATCGTTGTCCAGAATCCTAGTTTTCTCAAC]
[+] EMBL CB667903 [AAAAAAAAAAAGAAGAGAAAAACCGAACGAAAATCCCCTCGCGCAGACGACTACTACATCCTTCTCGTCTCATCCCGTCGACCCGCCGCCGCCTCAATCTCGAAGCCTCGGCGAGGCTAGGGTTTCTGCGTCTCCATGGGCTCTAAGAAGCGGTCGCCTCAGCATCCGGCCGCCGCGGCGCCCCCTCCCGCCGTCGGCGGCGGCGGCGGCGGCGAGGTCTCCGGCGATGGTGGCGCCTCGACGGCGAACGGGCCGGTGGTGCCGAAGCCGTCGGAGGTGGCGCCGTTCCTGACGAAGGTGTACGACATGGTCTCGGACCCCGCGACCGACAACGTTATCTCGTGGGCCGAGGGCGGCGGCAGCTTCGTGATCTGGGACTCGCACGCCTTCGAGCGCGACCTCCACAGGCACTTCAAGCACAGCAATTTCACCAGCTTCATACGCCAGCTCAACACCTATTTCACCCTGATAGATGGGAGTGGGCCAATGAAGGTTTTATTATGGGCCAAAAACATCTTCTGAAGACCATTAAGAGGAGGAAGAAGTCTTCTCAGGAATCACCTAGCGAGATACAGAAGGCGCCTGTCAAAACTGCACCTGGTACTGAAAATATTGAGATAGGAAAATATGGTGGCCTTGAAAAGGAGGTTGAAACCCTTAAGAGGGATAAAGCTCTTCTCATGCAGCAGCTTGTAGATCTCAGGCACTACCAGCAAACATCTAACCTTGAAGTGCAGAATTTAATTGAACGGCTTCAAGTAATGGAACAGAACCAGCAGCAGATGATGGCACTTCTAGCAATCGTTGTCCAGAATCCTAGTTTTCTCAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7513#0 ACCAGACGACAACACACACACAAAAAAAAAAAAGAAGAGAAAAACCGAACGAAAATCCCC 60
consensus_7513#1 ----------------------AAAAAAAAAAAGAAGAGAAAAACCGAACGAAAATCCCC 38
**************************************
consensus_7513#0 TCGCGCAGACGACTACTACATCCTTCTCGTCTCATCCCGTCGACCCGCCGCCGCCTCAAT 120
consensus_7513#1 TCGCGCAGACGACTACTACATCCTTCTCGTCTCATCCCGTCGACCCGCCGCCGCCTCAAT 98
************************************************************
consensus_7513#0 CTCGAAGCCTCGGCGAGGCTAGGGTTTCTGCGTCTCCATGGGCTCTAAGAAGCGGTCGCC 180
consensus_7513#1 CTCGAAGCCTCGGCGAGGCTAGGGTTTCTGCGTCTCCATGGGCTCTAAGAAGCGGTCGCC 158
************************************************************
consensus_7513#0 TCAGCATCCGGCCGCCGCGGCGCCCCCTCCCGCCGTCGGCGGCGGCGGCGGCGGCGAGGT 240
consensus_7513#1 TCAGCATCCGGCCGCCGCGGCGCCCCCTCCCGCCGTCGGCGGCGGCGGCGGCGGCGAGGT 218
************************************************************
consensus_7513#0 CTCCGGCGATGGTGGCGCCTCGACGGCGAACGGGCCGGTGGTGCCGAAGCCGTCGGAGGT 300
consensus_7513#1 CTCCGGCGATGGTGGCGCCTCGACGGCGAACGGGCCGGTGGTGCCGAAGCCGTCGGAGGT 278
************************************************************
consensus_7513#0 GGCGCCGTTCCTGACGAAGGTGTACGACATGGTCTCGGACCCCGCGACCGACAACGTTAT 360
consensus_7513#1 GGCGCCGTTCCTGACGAAGGTGTACGACATGGTCTCGGACCCCGCGACCGACAACGTTAT 338
************************************************************
consensus_7513#0 CTCGTGGGCCGAGGGCGGCGGCAGCTTCGTGATCTGGGACTCGCACGCCTTCGAGCGCGA 420
consensus_7513#1 CTCGTGGGCCGAGGGCGGCGGCAGCTTCGTGATCTGGGACTCGCACGCCTTCGAGCGCGA 398
************************************************************
consensus_7513#0 CCTCCACAGGCACTTCAAGCACAGCAATTTCACCAGCTTCATACGCCAGCTCAACACCTA 480
consensus_7513#1 CCTCCACAGGCACTTCAAGCACAGCAATTTCACCAGCTTCATACGCCAGCTCAACACCTA 458
************************************************************
consensus_7513#0 TGGATTTCGTAAAGTTCACCCTGATAGATGGGAGTGGGCCAATGAAGGTTTTATTATGGG 540
consensus_7513#1 T-------------TTCACCCTGATAGATGGGAGTGGGCCAATGAAGGTTTTATTATGGG 505
* **********************************************
consensus_7513#0 CCAAAAACATCTTCTGAAGACCATTAAGAGGAGGAAGAAGTCTTCTCAGGAATCACCTAG 600
consensus_7513#1 CCAAAAACATCTTCTGAAGACCATTAAGAGGAGGAAGAAGTCTTCTCAGGAATCACCTAG 565
************************************************************
consensus_7513#0 CGAGATACAGAAGGCGCCTGTCAAAACTGCACCTGGTACTGAAAATATTGAGATAGGAAA 660
consensus_7513#1 CGAGATACAGAAGGCGCCTGTCAAAACTGCACCTGGTACTGAAAATATTGAGATAGGAAA 625
************************************************************
consensus_7513#0 ATATGGTGGCCTTGAAAAGGAGGTTGAAACCCTTAAGAGGGATAAAGCTCTTCTCATGCA 720
consensus_7513#1 ATATGGTGGCCTTGAAAAGGAGGTTGAAACCCTTAAGAGGGATAAAGCTCTTCTCATGCA 685
************************************************************
consensus_7513#0 GCAGCTTGTAGATCTCAGGCACTACCAGCAAACATCTAACCTTGAAGTGCAGAATTTAAT 780
consensus_7513#1 GCAGCTTGTAGATCTCAGGCACTACCAGCAAACATCTAACCTTGAAGTGCAGAATTTAAT 745
************************************************************
consensus_7513#0 TGAACGGCTTCAAGTAATGGAACAGAACCAGCAGCAGATGATGGCACTTCTAGCAATCGT 840
consensus_7513#1 TGAACGGCTTCAAGTAATGGAACAGAACCAGCAGCAGATGATGGCACTTCTAGCAATCGT 805
************************************************************
consensus_7513#0 TGTCCAGAATCCTAGTTTTCTCAA- 864
consensus_7513#1 TGTCCAGAATCCTAGTTTTCTCAAC 830
************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||