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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7545#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1057 fasta sequence
[CACTGCACTCCAAACCACACAGCCTCCTCGTCTCGTCTTCTGTCTCGCGCGCGCACGCCACTCGCTGGGAGCTCATGGAGGTCGGCTCGCTGCAGCACCTCGGCGACAGCTTCTCCTACCGGTGGCTCAAGCACGCGGCGCAGGCGCCGTCGTTCAAGCGCCTCGTCGACGACGATGTCGGCGGAAGCTCCAGGTACTTCATCGACATGGACCCCGCCGACCTCTTCTCCATGCGGTGGACGGCTCCGGGCACCGACTTCGACTTCGACTTCGACCTGCCCGGCGGCGACGACGATGCCGCCTCTCCGATCCCGCTGCTGGTCAGCGCGAGCCAGATCTTCCACGATGGCCGTCTACTTCCCCACGAGCTCGACGACGACGGCCGCTTCGGTGCCCAAGAAGACAGCGATGCCGCTCGCGTCGCGCACTTGCTGAGCGAGCCCCGGCTCTCGGCCTCGTCGCCGCTGTTCCACTCAGCGCAGAGCACGCCGGCCTCGCTGAGCTCGTCGTCCAGCGCGAGGAGCGGCGCCAGCAAGAACGCCAGCGCGCCGCCGCTGCTCGCCGCGGGGAGGCGTGGC-GGCGGGTCATCGCCGTGGAAGATACTGCTCAGGTACCTGCGGTTCCTCATGCCGCTCTACCGGAAGGTCAGGGCGCTGCCGCCGCTGCGTGCTCCGAGGACGAGGGTCTCGCCGGCGAGCCCCGCGAGCGCGAGAGCAAGGGCGTCCACGTCCAGCATCGACTGGTGCCACGGCATTGCCGACACGGCCGTCCATGACGCCATCCTCTACTGCAAGAAATCCAGTGGACAAAATATATAGCCAGGAACAAAGGATTCACAATCTGCAAGAGCATGAGCTGATCTTGTGGCCTCTCAACTCAAGATCCTCTTGTTTTTTCCACCATTATTTTTGTTGTACATCCACATAAGTTATACACTGTATATGCATGTGACAAGCTGCATGAGGAGTACGTTTAACGGTTGTAAACAGCTCGTTTAGGGTGTAATAGATGGCTCCCTTTCTTGTCTTTCTCGTTTGTCTTTGGCCATGTGAAAAAA]
[+] EMBL AK119960 [CACTGCACTCCAAACCACACAGCCTCCTCGTCTCGTCTTCTGTCTCGCGCGCGCACGCCACTCGCTGGGAGCTCATGGAGGTCGGCTCGCTGCAGCACCTCGGCGACAGCTTCTCCTACCGGTGGCTCAAGCACGCGGCGCAGGCGCCGTCGTTCAAGCGCCTCGTCGACGACGATGTCGGCGGAAGCTCCAGGTACTTCATCGACATGGACCCCGCCGACCTCTTCTCCATGCGGTGGACGGCTCCGGGCACCGACTTCGACTTCGACTTCGACCTGCCCGGCGGCGACGACGATGCCGCCTCTCCGATCCCGCTGCTGGTCAGCGCGAGCCAGATCTTCCACGATGGCCGTCTACTTCCCCACGAGCTCGACGACGACGGCCGCTTCGGTGCCCAAGAAGACAGCGATGCCGCTCGCGTCGCGCACTTGCTGAGCGAGCCCCGGCTCTCGGCCTCGTCGCCGCTGTTCCACTCAGCGCAGAGCACGCCGGCCTCGCTGAGCTCGTCGTCCAGCGCGAGGAGCGGCGCCAGCAAGAACGCCAGCGCGCCGCCGCTGCTCGCCGCGGGGAGGCGTGGC GGCGGGTCATCGCCGTGGAAGATACTGCTCAGGTACCTGCGGTTCCTCATGCCGCTCTACCGGAAGGTCAGGGCGCTGCCGCCGCTGCGTGCTCCGAGGACGAGGGTCTCGCCGGCGAGCCCCGCGAGCGCGAGAGCAAGGGCGTCCACGTCCAGCATCGACTGGTGCCACGGCATTGCCGACACGGCCGTCCATGACGCCATCCTCTACTGCAAGAAATCCAGTGGACAAAATATATAGCCAGGAACAAAGGATTCACAATCTGCAAGAGCATGAGCTGATCTTGTGGCCTCTCAACTCAAGATCCTCTTGTTTTTTCCACCATTATTTTTGTTGTACATCCACATAAGTTATACACTGTATATGCATGTGACAAGCTGCATGAGGAGTACGTTTAACGGTTGTAAACAGCTCGTTTAGGGTGTAATAGATGGCTCC ]
[+] EMBL CA754672 [ TCCTACCGGTGGCTCAAGCACGCGGCGCAGGCGCCGTCGTTCAAGCGCCTCGTCGACGACGATGTCGGCGGAAGCTCCAGGTACTTCATCGACATGGACCCCGCCGACCTCTTCTCCATGCGGTGGACGGCTCCGGGCACCGACTTCGACTTCGACTTCGACCTGCCCGGCGGCGACGACGATGCCGCCTCTCCGATCCCGCTGCTGGTCAGCGCGAGCCAGATCTTCCACGATGGGCGTCTACTTCCCCACGAGCTCGACGACGACGGCCGCTTCGGTGCCCAAGAAGACGGCGATGCCGCTCGCGTCGCGCACTTGCTGAGCGAGCCCCGGCTCTCGGCCTCGTCGCCGCTGTTCCACTCAGCGCAGAGCACGCCGGCCTCGCTGAGCTCGTCGTCCAGCGCGAGGAGCGGGGCCAGCAAGAACGCCAGCGCGGCGCCACTGCTCGCCGCGGGGAGGCGTGGCGGGCGGGTCATCGCCGTGGAAGATACTGCTCAGGTACCTGGGGGTCCTCATGCCGCTCTACCGGAGGGTCAGGG GCTGCCGGCCCTGCGTGCTCCCAAGAAGAGGGTCTCCCCGGCGAGCCCCGC AGCGCGAGAG GAGGGCGTCC CGT ]
[+] EMBL AU101323 [ AGCACGCCGGCCTCGCTGAGCTCGTNGTCCAGCGCGAGGANCGGCGCCAGCAAGAACGCCAGCGCGCCGCCGCTGCTCGCCGCGGGGAGGCGTGGC GNNGGGTCATCGCCGTGGAAGATACTGCTCAGGTA CTGCGGTTCCTCATGCCGCTCTACCGGAAGGTCAGGGCGCTGCCGCCGCTGCGTGCTCCGAGGACGAGGGTCTCGCCGGCGAGCCCCGCGAGCGCGAGAGCAAGGGCGTCCACGTCCAGCATCGACTGGTGCCACGGCATTGCCGACACGGCCGTCCATGACGCCATCCTCTACTGCAAGAAATCCAGTGGACAAAATATATAGCCAGGAACAAAGGATTCACAATCTGCAAGAGCATGAGCTGATCTTGTGGCCTCTCAACTCAAGATCCTCTCGTTTTTTCCACCATTATTTTTGTTGTACATCCACATAAGTTATACACTGTATATGCATGTGACAAGCTGCATGAGGAGTACGTTTAACGGTTGTAAACAGCTCGTTTAGGGTGTAATAGATGGCTCCCTTTCTTGTCTTTCTCGTTTGTCTTTGGCCATGTGAAAAAA]
consensusID : consensus_7545#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 233 fasta sequence
[TNTTCTGTCTCGCGCGCGCACGCACTCGCTGGGAGCTCATNGANGTCGGCTCGCTGCAGCACCTCGGCGACAGTTCTCCTACCGGTNGCTCAAGCACNCGGCGCAGGCNTCGTTTNCAAGCGCCTNGTCGACGACGATTGTCGGCGTAAGTCCAGGTACTTCATCGACATGGACCCCNCCGACCTACTNTNCATGCGGTGGACGGCTNCGGGCACCGACTTCGACTTCGACTT]
[+] EMBL OSC766 [TNTTCTGTCTCGCGCGCGCACGCACTCGCTGGGAGCTCATNGANGTCGGCTCGCTGCAGCACCTCGGCGACAGTTCTCCTACCGGTNGCTCAAGCACNCGGCGCAGGCNTCGTTTNCAAGCGCCTNGTCGACGACGATTGTCGGCGTAAGTCCAGGTACTTCATCGACATGGACCCCNCCGACCTACTNTNCATGCGGTGGACGGCTNCGGGCACCGACTTCGACTTCGACTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7545#0 CACTGCACTCCAAACCACACAGCCTCCTCGTCTCGTCTTCTGTCTCGCGCGCGCACGCCA 60
consensus_7545#1 -----------------------------------TNTTCTGTCTCGCGCGCGCACGC-A 24
* ********************* *
consensus_7545#0 CTCGCTGGGAGCTCATGGAGGTCGGCTCGCTGCAGCACCTCGGCGACAGCTTCTCCTACC 120
consensus_7545#1 CTCGCTGGGAGCTCATNGANGTCGGCTCGCTGCAGCACCTCGGCGACAG-TTCTCCTACC 83
**************** ** ***************************** **********
consensus_7545#0 GGTGGCTCAAGCACGCGGCGCAGGCGCCGTCGTTCAAGCGCCTCGTCGACGACGAT-GTC 179
consensus_7545#1 GGTNGCTCAAGCACNCGGCGCAGGCNTCGTT-TNCAAGCGCCTNGTCGACGACGATTGTC 142
*** ********** ********** *** * ********* ************ ***
consensus_7545#0 GGCGGAAGCTCCAGGTACTTCATCGACATGGACCCCGCCGACCTCTTCTCCATGCGGTGG 239
consensus_7545#1 GGCGTAAG-TCCAGGTACTTCATCGACATGGACCCCNCCGACCTACTNTNCATGCGGTGG 201
**** *** *************************** ******* * * **********
consensus_7545#0 ACGGCTCCGGGCACCGACTTCGACTTCGACTTCGACCTGCCCGGCGGCGACGACGATGCC 299
consensus_7545#1 ACGGCTNCGGGCACCGACTTCGACTTCGACTT---------------------------- 233
****** *************************
consensus_7545#0 GCCTCTCCGATCCCGCTGCTGGTCAGCGCGAGCCAGATCTTCCACGATGGCCGTCTACTT 359
consensus_7545#1 ------------------------------------------------------------
consensus_7545#0 CCCCACGAGCTCGACGACGACGGCCGCTTCGGTGCCCAAGAAGACAGCGATGCCGCTCGC 419
consensus_7545#1 ------------------------------------------------------------
consensus_7545#0 GTCGCGCACTTGCTGAGCGAGCCCCGGCTCTCGGCCTCGTCGCCGCTGTTCCACTCAGCG 479
consensus_7545#1 ------------------------------------------------------------
consensus_7545#0 CAGAGCACGCCGGCCTCGCTGAGCTCGTCGTCCAGCGCGAGGAGCGGCGCCAGCAAGAAC 539
consensus_7545#1 ------------------------------------------------------------
consensus_7545#0 GCCAGCGCGCCGCCGCTGCTCGCCGCGGGGAGGCGTGGCGGCGGGTCATCGCCGTGGAAG 599
consensus_7545#1 ------------------------------------------------------------
consensus_7545#0 ATACTGCTCAGGTACCTGCGGTTCCTCATGCCGCTCTACCGGAAGGTCAGGGCGCTGCCG 659
consensus_7545#1 ------------------------------------------------------------
consensus_7545#0 CCGCTGCGTGCTCCGAGGACGAGGGTCTCGCCGGCGAGCCCCGCGAGCGCGAGAGCAAGG 719
consensus_7545#1 ------------------------------------------------------------
consensus_7545#0 GCGTCCACGTCCAGCATCGACTGGTGCCACGGCATTGCCGACACGGCCGTCCATGACGCC 779
consensus_7545#1 ------------------------------------------------------------
consensus_7545#0 ATCCTCTACTGCAAGAAATCCAGTGGACAAAATATATAGCCAGGAACAAAGGATTCACAA 839
consensus_7545#1 ------------------------------------------------------------
consensus_7545#0 TCTGCAAGAGCATGAGCTGATCTTGTGGCCTCTCAACTCAAGATCCTCTTGTTTTTTCCA 899
consensus_7545#1 ------------------------------------------------------------
consensus_7545#0 CCATTATTTTTGTTGTACATCCACATAAGTTATACACTGTATATGCATGTGACAAGCTGC 959
consensus_7545#1 ------------------------------------------------------------
consensus_7545#0 ATGAGGAGTACGTTTAACGGTTGTAAACAGCTCGTTTAGGGTGTAATAGATGGCTCCCTT 1019
consensus_7545#1 ------------------------------------------------------------
consensus_7545#0 TCTTGTCTTTCTCGTTTGTCTTTGGCCATGTGAAAAAA 1057
consensus_7545#1 --------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||