|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7552#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1442 fasta sequence
[CTCTCCGCCTGCCGCGCCGCGAGCTCCCAGAGAATCACCGGCGCATTCCGCTGCGATTCTTGCTGCAGCAGCGGCCGCGGCGGCGGCGGCCACCTCGTGAAGGCTTGAAGCCCACCGGGGAAGGGGAGGGAGGGAGCCCACCGGGGAAGGGGAGGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGGCTGCGGGCTTCTCGCGGCGGGATGGCGCTGCAAAGCTGCTGCTCCTCCTCCGCCTCCGTGCCCGCGACCTGTTCGGCGCTTTGCCTCGCGGAAGCGACGCGCGCCGCGAGCCTCTTCGTGCGCCCGCGCGCCGCCGCGAGGAGGCTCGTGCTCGCCCGATGCGCGCGGGGGCGGGAGGGCGGCGAGTCCAA-GCGGTGCAGCTGGTGCTCGGCGGCCGCGCGCGCGACGACGGGTCCGAGTCCGAGTCCAGCGACGACGAGGACGACGACGAGCCGATGCAGATGACGGACGAGCAGAGGAGGACGCTGCGGAGGAAGATACGGGAGATGATGGACCGGGTGCCCGAGACGGCGGAGATCACGGACCCGGCGGAGAGGAAGGCCAAGATGCTGGAGCTGCTGACCAAGTACCAGCTCGTGGTGGAGGAGGAGGACCCGAACTGGCCGGAGGACGATGAGGACGGCCATGGGTTCAGCCTCGGCCAGTTCTTCGACAAGATCACCATCAAGGCCGAGAAGAAGAATGATGATGATGAGGAGGACGATGCTAAGGGGAATCAGAGTGACAAGGAGATAGTTTGGGAGGACGACAACTACATCAAGCCAATCAGGGATGTCAAGACCATGGACTGGGATGACACCGTCTTCACGGACTTCGGTCCTTTGATTGTGCTTGTTCATAACCGATACAAAAGACCGCAGGACAATGAAAATGCAAGGGATCAACTAGTTAAGGCAATTGAGATGTTTTGGGAATACAATCTGCCTTCACCAAGGTGCGTGGCTGTAGATGCCTGTGCAGAACCTGACCTTGTGAAGGCCCTGAATGTTTCTGGTTTCCCAGAGGTCCTCTTCACTAATGCAGGGAAGATAGTTCACCGTGACAAAGTCGTCCGATCGGCTGAGGAATGGACAAGAATGATGGCATTCTTCTACTATAAAGCAGCAAGGCCGCCTTGCTTGAGCGAGGCAGATGGTCAGGGTCAAGAAAAGGTCCCCCTGATGTCATAAGAACAGTGTGTAGGCGTAGCTTGTA-GTTGTATTTTACATCAGTGTGCATTGTTAGAAA-CTTAGAGTTTAAATCAGTTCACATTTCTTAGCTTTTTAAATGTCGTAACACAGGCATCTATTAGCATCTACTAGTGAATTGCCATCTTTATCTGTTAATGGCATAGAATAGATATATCCAAACTGCAACAAGATTATGTTCATGTGCTGTAGGATTATGGTTAAAAA]
[+] EMBL AK071955 [CTCTCCGCCTGCCGCGCCGCGAGCTCCCAGAGAATCACCGGCGCATTCCGCTGCGATTCTTGCTGCAGCAGCGGCCGCGGCGGCGGCGGCCACCTCGTGAAGGCTTGAAGCCCACCGGGGAAGGGGAGGGAGGGAGCCCACCGGGGAAGGGGAGGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGGCTGCGGGCTTCTCGCGGCGGGATGGCGCTGCAAAGCTGCTGCTCCTCCTCCGCCTCCGTGCCCGCGACCTGTTCGGCGCTTTGCCTCGCGGAAGCGACGCGCGCCGCGAGCCTCTTCGTGCGCCCGCGCGCCGCCGCGAGGAGGCTCGTGCTCGCCCGATGCGCGCGGGGGCGGGAGGGCGGCGAGTCCAA GCGGTGCAGCTGGTGCTCGGCGGCCGCGCGCGCGACGACGGGTCCGAGTCCGAGTCCAGCGACGACGAGGACGACGACGAGCCGATGCAGATGACGGACGAGCAGAGGAGGACGCTGCGGAGGAAGATACGGGAGATGATGGACCGGGTGCCCGAGACGGCGGAGATCACGGACCCGGCGGAGAGGAAGGCCAAGATGCTGGAGCTGCTGACCAAGTACCAGCTCGTGGTGGAGGAGGAGGACCCGAACTGGCCGGAGGACGATGAGGACGGCCATGGGTTCAGCCTCGGCCAGTTCTTCGACAAGATCACCATCAAGGCCGAGAAGAAGAATGATGATGATGAGGAGGACGATGCTAAGGGGAATCAGAGTGACAAGGAGATAGTTTGGGAGGACGACAACTACATCAAGCCAATCAGGGATGTCAAGACCATGGACTGGGATGACACCGTCTTCACGGACTTCGGTCCTTTGATTGTGCTTGTTCATAACCGATACAAAAGACCGCAGGACAATGAAAATGCAAGGGATCAACTAGTTAAGGCAATTGAGATGTTTTGGGAATACAATCTGCCTTCACCAAGGTGCGTGGCTGTAGATGCCTGTGCAGAACCTGACCTTGTGAAGGCCCTGAATGTTTCTGGTTTCCCAGAGGTCCTCTTCACTAATGCAGGGAAGATAGTTCACCGTGACAAAGTCGTCCGATCGGCTGAGGAATGGACAAGAATGATGGCATTCTTCTACTATAAAGCAGCAAGGCCGCCTTGCTTGAGCGAGGCAGATGGTCAGGGTCAAGAAAAGGTCCCCCTGATGTCATAAGAACAGTGTGTAGGCGTAGCTTGTA GTTGTATTTTACATCAGTGTGCATTGTTAGAAA CTTAGAGTTTAAATCAGTTCACATTTCTTAGCTTTTTAAATGTCGTAACACAGGCATCTATTAGCATCTACTAGTGAATTGCCATCTTTATCTGTTAATGGCATAGAATAGATATATCCAAACTGCAACAAGATTATGTTCATGTGCTGTAGGATT ]
[+] EMBL CB631158 [ AGAGAGAGAGAGAGGCTGCGGGCTTCTCGCGGCGGGATGGCGCTGCAAAGCTGCTGCTCCTCCTCCGCCTCCGTGCCCGCGACCTGTTCGGCGCTTTGCCTCGCGGAAGCGACGCGCGCCGCGAGCCTCTTCGTGCGCCCGCGCGCCGCCGCGAGGAGGCTCGTGCTCGCCCGATGCGCGCGGGGGCGGGAGGGCGGCGAGTCCAAGGCGGTGCAGCTGGTGCTCGGCGGCCGCGCGCGCGACGACGGGTCCGAGTCCGAGTCCAGCGACGACGAGGACGACGACGAGCCGATGCAGATGACGGACGAGCAGAGGAGGACGCTGCGGAGGAAGATACGGGAGATGATGGACCGGGTGCCCGAGACGGCGGAGATCACGGACCCGGCGGAGAGGAAGGCCAAGATGCTGGAGCTGCTGACCAAGTACCAGCTCGTGGTGGAGGAGGAGGACCCGAACTGGCCGGAGGACGATGAGGACGGCCATGGGTTCAGCCTCGGCCAGTTCTTCGACAAGATCACCATCAAGGCCGAGAAGAAGAATGATGATGATGAGGAGGACGATGCTAAGGGGAATCAGAGTGACAAGGAGATAGTTTGGGAGGACGACAACTACATCAAGCCAATCAGGGATGTCAAGACCATGGACTGGGATGACACCGTCTTCACGGACTTCGGTCCTTTGATTGTGCTTGTTCATAACCGATACAAAAGACCGCAGGACAATGAAAATGCAAGGGATCAACTAGTTAAGGCAATTGAGATGTTTTGGGAATACAATCT ]
[+] EMBL BI799982 [ AGATGTTTTGGGAATACAATCTGCCTTCACCCAGGTGCGTGGCTGTAGATGCCTGTGCAGAACCTGACCTTGTGAAGGCCCTGAATGTTTCTGGTTTCCCAGAGGTCCTCTTCACTAATGCAGGGAAGATAGTTCACCGTGACAAAGTCGTCCGATCGGCTGAGGAATGGACAAGAATGATGGCATTCTTCTACTATAAAGCAGCAAGGCCGCCTTGCTTGAGCGAGGCAGATGGTCAGGGTCAAGAAAAGGTCCCCCTGATGTCATAAGAACAGTGTGTAGGCGTAGCTTGTACGTTGTATTTTACATCAGTGTGCATTGTTAGAAACCTTAGAGTTTAAATCAGTTCACATTTCTTAGCTTTTTAAATGTCGTAACACAGGCATCTATTAGCATCTACTAGTGAATTGCCATCTTTATCTGTTAATGGCATAGAATAGATATATCC AACTGCAACAAGATTATGTTCATGTGCTGTAGGATTATGGTTAAAAA]
consensusID : consensus_7552#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence
[TGACAAGGAGATAGTTTGGGAGGACGACAACTACATCAAGCCAATCAGGGATGTCAAGACCATGGACTGGGATGACACCGTCTTCACGGACTTCGGTCCTTTGATTGTGCTTGTTCATAACCGATACAAAAGACCGCAGGACAATGAAAATGCAAGGGATCAACTAGTTAAGGCAATTGAGATGTTTTGGGAATACAATCTGCCTTCACCCAGGTGCGTGGCTGTAGATGCCTGTGCAGAACCTGACCTTGTGAAGGCCCTGAATGTTTCTGGTTTCCCAGAGGTCCTCTTCACTAATGCAGGGAAGATAGTTCACCGTGACAAAGGTATTTGTATGAGCATAGGAGCATAATGCTATGTTGTTTTAAACCCTCAGTTGGCCAATTGCCTCATGAGGTTTTCTCAATTTTGTTCTCCCTTGTTAGTCGTCCGATCGGCTGAGGAATGGACAAGAATGATGGCATTCTTCTACTATAAAGCAGCAAGGCCGCCTTGCTTGAGCGAGGCAGATGGTCAGGGTCAAGAAAAGGTCCCCCTGATGTCATAAGAACAGTGTGTAGGCGTAGCTTGTAGTTGTATTTTACTTCAGTGTGCATTGGTAGAAACTTAGAGNTTAAATCAGNTCACATTTCTTAG]
[+] EMBL CA763864 [TGACAAGGAGATAGTTTGGGAGGACGACAACTACATCAAGCCAATCAGGGATGTCAAGACCATGGACTGGGATGACACCGTCTTCACGGACTTCGGTCCTTTGATTGTGCTTGTTCATAACCGATACAAAAGACCGCAGGACAATGAAAATGCAAGGGATCAACTAGTTAAGGCAATTGAGATGTTTTGGGAATACAATCTGCCTTCACCCAGGTGCGTGGCTGTAGATGCCTGTGCAGAACCTGACCTTGTGAAGGCCCTGAATGTTTCTGGTTTCCCAGAGGTCCTCTTCACTAATGCAGGGAAGATAGTTCACCGTGACAAAGGTATTTGTATGAGCATAGGAGCATAATGCTATGTTGTTTTAAACCCTCAGTTGGCCAATTGCCTCATGAGGTTTTCTCAATTTTGTTCTCCCTTGTTAGTCGTCCGATCGGCTGAGGAATGGACAAGAATGATGGCATTCTTCTACTATAAAGCAGCAAGGCCGCCTTGCTTGAGCGAGGCAGATGGTCAGGGTCAAGAAAAGGTCCCCCTGATGTCATAAGAACAGTGTGTAGGCGTAGCTTGTAGTTGTATTTTACTTCAGTGTGCATTGGTAGAAACTTAGAGNTTAAATCAGNTCACATTTCTTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7552#0 CTCTCCGCCTGCCGCGCCGCGAGCTCCCAGAGAATCACCGGCGCATTCCGCTGCGATTCT 60
consensus_7552#1 ------------------------------------------------------------
consensus_7552#0 TGCTGCAGCAGCGGCCGCGGCGGCGGCGGCCACCTCGTGAAGGCTTGAAGCCCACCGGGG 120
consensus_7552#1 ------------------------------------------------------------
consensus_7552#0 AAGGGGAGGGAGGGAGCCCACCGGGGAAGGGGAGGGAGGGAGAGAGAGAGAGAGAGAGAG 180
consensus_7552#1 ------------------------------------------------------------
consensus_7552#0 AGAGAGAGAGGGAGAGAGAGAGAGAGGCTGCGGGCTTCTCGCGGCGGGATGGCGCTGCAA 240
consensus_7552#1 ------------------------------------------------------------
consensus_7552#0 AGCTGCTGCTCCTCCTCCGCCTCCGTGCCCGCGACCTGTTCGGCGCTTTGCCTCGCGGAA 300
consensus_7552#1 ------------------------------------------------------------
consensus_7552#0 GCGACGCGCGCCGCGAGCCTCTTCGTGCGCCCGCGCGCCGCCGCGAGGAGGCTCGTGCTC 360
consensus_7552#1 ------------------------------------------------------------
consensus_7552#0 GCCCGATGCGCGCGGGGGCGGGAGGGCGGCGAGTCCAAGCGGTGCAGCTGGTGCTCGGCG 420
consensus_7552#1 ------------------------------------------------------------
consensus_7552#0 GCCGCGCGCGCGACGACGGGTCCGAGTCCGAGTCCAGCGACGACGAGGACGACGACGAGC 480
consensus_7552#1 ------------------------------------------------------------
consensus_7552#0 CGATGCAGATGACGGACGAGCAGAGGAGGACGCTGCGGAGGAAGATACGGGAGATGATGG 540
consensus_7552#1 ------------------------------------------------------------
consensus_7552#0 ACCGGGTGCCCGAGACGGCGGAGATCACGGACCCGGCGGAGAGGAAGGCCAAGATGCTGG 600
consensus_7552#1 ------------------------------------------------------------
consensus_7552#0 AGCTGCTGACCAAGTACCAGCTCGTGGTGGAGGAGGAGGACCCGAACTGGCCGGAGGACG 660
consensus_7552#1 ------------------------------------------------------------
consensus_7552#0 ATGAGGACGGCCATGGGTTCAGCCTCGGCCAGTTCTTCGACAAGATCACCATCAAGGCCG 720
consensus_7552#1 ------------------------------------------------------------
consensus_7552#0 AGAAGAAGAATGATGATGATGAGGAGGACGATGCTAAGGGGAATCAGAGTGACAAGGAGA 780
consensus_7552#1 -------------------------------------------------TGACAAGGAGA 11
***********
consensus_7552#0 TAGTTTGGGAGGACGACAACTACATCAAGCCAATCAGGGATGTCAAGACCATGGACTGGG 840
consensus_7552#1 TAGTTTGGGAGGACGACAACTACATCAAGCCAATCAGGGATGTCAAGACCATGGACTGGG 71
************************************************************
consensus_7552#0 ATGACACCGTCTTCACGGACTTCGGTCCTTTGATTGTGCTTGTTCATAACCGATACAAAA 900
consensus_7552#1 ATGACACCGTCTTCACGGACTTCGGTCCTTTGATTGTGCTTGTTCATAACCGATACAAAA 131
************************************************************
consensus_7552#0 GACCGCAGGACAATGAAAATGCAAGGGATCAACTAGTTAAGGCAATTGAGATGTTTTGGG 960
consensus_7552#1 GACCGCAGGACAATGAAAATGCAAGGGATCAACTAGTTAAGGCAATTGAGATGTTTTGGG 191
************************************************************
consensus_7552#0 AATACAATCTGCCTTCACCAAGGTGCGTGGCTGTAGATGCCTGTGCAGAACCTGACCTTG 1020
consensus_7552#1 AATACAATCTGCCTTCACCCAGGTGCGTGGCTGTAGATGCCTGTGCAGAACCTGACCTTG 251
******************* ****************************************
consensus_7552#0 TGAAGGCCCTGAATGTTTCTGGTTTCCCAGAGGTCCTCTTCACTAATGCAGGGAAGATAG 1080
consensus_7552#1 TGAAGGCCCTGAATGTTTCTGGTTTCCCAGAGGTCCTCTTCACTAATGCAGGGAAGATAG 311
************************************************************
consensus_7552#0 TTCACCGTGACAAAG--------------------------------------------- 1095
consensus_7552#1 TTCACCGTGACAAAGGTATTTGTATGAGCATAGGAGCATAATGCTATGTTGTTTTAAACC 371
***************
consensus_7552#0 ------------------------------------------------------TCGTCC 1101
consensus_7552#1 CTCAGTTGGCCAATTGCCTCATGAGGTTTTCTCAATTTTGTTCTCCCTTGTTAGTCGTCC 431
******
consensus_7552#0 GATCGGCTGAGGAATGGACAAGAATGATGGCATTCTTCTACTATAAAGCAGCAAGGCCGC 1161
consensus_7552#1 GATCGGCTGAGGAATGGACAAGAATGATGGCATTCTTCTACTATAAAGCAGCAAGGCCGC 491
************************************************************
consensus_7552#0 CTTGCTTGAGCGAGGCAGATGGTCAGGGTCAAGAAAAGGTCCCCCTGATGTCATAAGAAC 1221
consensus_7552#1 CTTGCTTGAGCGAGGCAGATGGTCAGGGTCAAGAAAAGGTCCCCCTGATGTCATAAGAAC 551
************************************************************
consensus_7552#0 AGTGTGTAGGCGTAGCTTGTAGTTGTATTTTACATCAGTGTGCATTGTTAGAAACTTAGA 1281
consensus_7552#1 AGTGTGTAGGCGTAGCTTGTAGTTGTATTTTACTTCAGTGTGCATTGGTAGAAACTTAGA 611
********************************* ************* ************
consensus_7552#0 GTTTAAATCAGTTCACATTTCTTAGCTTTTTAAATGTCGTAACACAGGCATCTATTAGCA 1341
consensus_7552#1 GNTTAAATCAGNTCACATTTCTTAG----------------------------------- 636
* ********* *************
consensus_7552#0 TCTACTAGTGAATTGCCATCTTTATCTGTTAATGGCATAGAATAGATATATCCAAACTGC 1401
consensus_7552#1 ------------------------------------------------------------
consensus_7552#0 AACAAGATTATGTTCATGTGCTGTAGGATTATGGTTAAAAA 1442
consensus_7552#1 -----------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||