cluster # 7562

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Oryza sativa
cluster # 7562 cluster # 7562 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7562#0 length = 685 sequences # 3

consensus_7562#1 length = 393 sequences # 1

consensusID : consensus_7562#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 685
fasta sequence

                              [GGATTCCCGGTCGACCCACGCGTCCTCATCAACCTAGAAACCAAAGGACAGACAGGAGCGGAGCGCTCGGATCGGAGGAAGGGGATCGGCC-CCGCCATGAGCACCATGAAGTTTT-CCGCGAGTGCAACAACATCCTGTACCCTAAGGAGGAGAAGGACCGGCGGCTGCTGCTGTTCGCGTGCCGGAACTGCGAGCACCAGGAGGTATCGGAGAGCAAGTGCGTGTATCGGAACGAGGTGGCGCACGCGGCCGGGGAGCGGACGCAGGTGCTGCAGGACGTGGCGTCGGACCCGACACTGCCGCGCACAAAGACGGTGAGGTGC-CCGCCTGCGGGCACGGCGA-GCCGTCTTCTTCCAGGCCACCGCCCGCGGCGAGGAGGGCATGACCCTCTTCTTCGTCTGCTGCAACCTCACCTGCGCCCACCGATGGAGGGAATGATTTTACTTCTTTCTCTTCTTCTCCACAACTACAACTTGATCGATCATGATGATCAACTTTCCCGGTTTGCTTAAACAAGACAATTGAGTACTAGTTTGTAAATGGATGGAGGTTTAGCAATAGGTAGGGTTCTCTGCCTTCATCGGGCTCATGTTTTATCTACTTGTCTTGTTTAACTCGTACTCCTTCGATGCTAGATCAATGTTAACTTGGGATGCTAATTGTTGAATCAGCAGACGATACATGG]

[+] EMBL BI813354             [GGATTCCCGGTCGACCCACGCGTCCTCATCAACCTAGAAACCAAAGGACAGACAGGAGCGGAGCGCTCGGATCGGAGGAAGGGGATCGGCC CCGCCATGAGCACCATGAAGTTTT CCGCGAGTGCAACAACATCCTGTACCCTAAGGAGGAGAAGGACCGGCGGCTGCTGCTGTTCGCGTGCCGGAACTGCGAGCACCAGGAGGTATCGGAGAGCAAGTGCGTGTATCGGAACGAGGTGGCGCACGCGGCCGGGGAGCGGACGCAGGTGCTGCAGGACGTGGCGTCGGACCCGACACTGCCGCGCACAAAGACGGTGAGGTGC CCGCCTGCGGGCACGGCGA GCCGTCTTCTTCCAGGCCACCGCCCGCGGCGAGGAGGGCATGACCCTCTTCTTCGTCTGCTGCAACCTCACCTGCGCCCACCGATGGAGGGAATGATTTTACTTCTTTCTCTTCTTCTCCACAACTACAACTTGATCGATCATGATGATCAACTTTCCCGGTTTGCTTAAACAAGAC ATTGAGTACTAGTTTGTAAATGGATGGAGGTTTAGC ATAGGTAGGGTTCTCTGCCTTCATCGGGCTCATGTTTTAaaaaaaaa                                                                                 ]
[+] EMBL AK120183             [                                                                        CGGAGGAAGGGGATCGGCCGCCGCCATGAGCACCATGAAGTTTTGCCGCGAGTGCAACAACATCCTGTACCCTAAGGAGGAGAAGGACCGGCGGCTGCTGCTGTTCGCGTGCCGGAACTGCGAGCACCAGGAGGTATCGGAGAGCAAGTGCGTGTATCGGAACGAGGTGGCGCACGCGGCCGGGGAGCGGACGCAGGTGCTGCAGGACGTGGCGTCGGACCCGACACTGCCGCGCACAAAGACGGTGAGGTGCGCCGCCTGCGGGCACGGCGAGGCCGTCTTCTTCCAGGCCACCGCCCGCGGCGAGGAGGGCATGACCCTCTTCTTCGTCTGCTGCAACCTCACCTGCGCCCACCGATGGAGGGAATGATTTTACTTCTTTCTCTTCTTCTCCACAACTACAACTTGATCGATCATGATGATCAACTTTCCCGGTTTGCTTAAACAAGACAATTGAGTACTAGTTTGTAAATGGATGGAGGTTTAGCAATAGGTAGGGTTCTCTGCCTTCATCGGGCTCATGTTTTATCTACTTGTCTTGTTTAACTCGTACTCCTTCGATGCTAGATCAATGTTAACTTGGGATGCTAATTGTTGAATCAGCAGACGATACATGG]
[+] EMBL AU101205             [                                                                                                                                                                                                                                                                                                                                                                           CACCGCCCGCGGCGAGNAGGGCATGACCCTCTTCTTCNTCTGCTGCAACCTCACCTGCGCCCACCGATGGAGGGAATGATTTTACTTCTTNCTCTTCTTCTNNACAACTACAACTTGATCGATCATGATGATCAACTTTCCCGGTTTGCTTAAACAAGACAATTGAGTACTAGTTTGTAAATGGATGGAGGTTTAGCAATAGGTAGGGTTCTCTGCCTTCATCGGGCTCATGTTTTATCTACTTGTCTTGTTTAACTCGTACTCCTTCGATGCTAGATCAATGTTAACTTGGGATGCTAAaaa                       ]




>consensus_7562#0
GGATTCCCGGTCGACCCACGCGTCCTCATCAACCTAGAAACCAAAGGACAGACAGGAGCG
GAGCGCTCGGATCGGAGGAAGGGGATCGGCCCCGCCATGAGCACCATGAAGTTTTCCGCG
AGTGCAACAACATCCTGTACCCTAAGGAGGAGAAGGACCGGCGGCTGCTGCTGTTCGCGT
GCCGGAACTGCGAGCACCAGGAGGTATCGGAGAGCAAGTGCGTGTATCGGAACGAGGTGG
CGCACGCGGCCGGGGAGCGGACGCAGGTGCTGCAGGACGTGGCGTCGGACCCGACACTGC
CGCGCACAAAGACGGTGAGGTGCCCGCCTGCGGGCACGGCGAGCCGTCTTCTTCCAGGCC
ACCGCCCGCGGCGAGGAGGGCATGACCCTCTTCTTCGTCTGCTGCAACCTCACCTGCGCC
CACCGATGGAGGGAATGATTTTACTTCTTTCTCTTCTTCTCCACAACTACAACTTGATCG
ATCATGATGATCAACTTTCCCGGTTTGCTTAAACAAGACAATTGAGTACTAGTTTGTAAA
TGGATGGAGGTTTAGCAATAGGTAGGGTTCTCTGCCTTCATCGGGCTCATGTTTTATCTA
CTTGTCTTGTTTAACTCGTACTCCTTCGATGCTAGATCAATGTTAACTTGGGATGCTAAT
TGTTGAATCAGCAGACGATACATGG

consensusID : consensus_7562#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 393
fasta sequence

                              [ATCGGAGGAAGGGGATCGGCCGCCGCCATGAGCACCATGAAGTTTTGCCGCGAGTGCAACAACATCCTGTACCCTAAGGAGGAGAAGGACCGGCGGCTGCTGCTGTTCGCGTGCCGGAACTGCGAGCACCAGGAGGTATCGGAGAGCAAGTGCGTGTATCGGAACGAGGTGGCGCACGCGGCCGGGGAGCGGACGCAGGTTGCTTGCAGGACGTGGCGTCGGACCCGACACTTGCCGCGCACAAAGACGGTTAGGTTGCGCCGCCTTGCGGGGCACGGCGANGCGTCTTTCTTTCCAAGGCCACCGCCCGCGGCGAAGGAGGGCATTACCTCTTTNTTTCGTCTTGCTTGCACCTTAACTTTGNGCCACGATTGANGATGATTTTANTTTTTT]

[+] EMBL C72958               [ATCGGAGGAAGGGGATCGGCCGCCGCCATGAGCACCATGAAGTTTTGCCGCGAGTGCAACAACATCCTGTACCCTAAGGAGGAGAAGGACCGGCGGCTGCTGCTGTTCGCGTGCCGGAACTGCGAGCACCAGGAGGTATCGGAGAGCAAGTGCGTGTATCGGAACGAGGTGGCGCACGCGGCCGGGGAGCGGACGCAGGTTGCTTGCAGGACGTGGCGTCGGACCCGACACTTGCCGCGCACAAAGACGGTTAGGTTGCGCCGCCTTGCGGGGCACGGCGANGCGTCTTTCTTTCCAAGGCCACCGCCCGCGGCGAAGGAGGGCATTACCTCTTTNTTTCGTCTTGCTTGCACCTTAACTTTGNGCCACGATTGANGATGATTTTANTTTTTT]




>consensus_7562#1
ATCGGAGGAAGGGGATCGGCCGCCGCCATGAGCACCATGAAGTTTTGCCGCGAGTGCAAC
AACATCCTGTACCCTAAGGAGGAGAAGGACCGGCGGCTGCTGCTGTTCGCGTGCCGGAAC
TGCGAGCACCAGGAGGTATCGGAGAGCAAGTGCGTGTATCGGAACGAGGTGGCGCACGCG
GCCGGGGAGCGGACGCAGGTTGCTTGCAGGACGTGGCGTCGGACCCGACACTTGCCGCGC
ACAAAGACGGTTAGGTTGCGCCGCCTTGCGGGGCACGGCGANGCGTCTTTCTTTCCAAGG
CCACCGCCCGCGGCGAAGGAGGGCATTACCTCTTTNTTTCGTCTTGCTTGCACCTTAACT
TTGNGCCACGATTGANGATGATTTTANTTTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7562#0      GGATTCCCGGTCGACCCACGCGTCCTCATCAACCTAGAAACCAAAGGACAGACAGGAGCG 60
consensus_7562#1      ------------------------------------------------------------
                                                                                  

consensus_7562#0      GAGCGCTCGGATCGGAGGAAGGGGATCGGCC-CCGCCATGAGCACCATGAAGTTTT-CCG 118
consensus_7562#1      ----------ATCGGAGGAAGGGGATCGGCCGCCGCCATGAGCACCATGAAGTTTTGCCG 50
                                ********************* ************************ ***

consensus_7562#0      CGAGTGCAACAACATCCTGTACCCTAAGGAGGAGAAGGACCGGCGGCTGCTGCTGTTCGC 178
consensus_7562#1      CGAGTGCAACAACATCCTGTACCCTAAGGAGGAGAAGGACCGGCGGCTGCTGCTGTTCGC 110
                      ************************************************************

consensus_7562#0      GTGCCGGAACTGCGAGCACCAGGAGGTATCGGAGAGCAAGTGCGTGTATCGGAACGAGGT 238
consensus_7562#1      GTGCCGGAACTGCGAGCACCAGGAGGTATCGGAGAGCAAGTGCGTGTATCGGAACGAGGT 170
                      ************************************************************

consensus_7562#0      GGCGCACGCGGCCGGGGAGCGGACGCAGGTG--CTGCAGGACGTGGCGTCGGACCCGACA 296
consensus_7562#1      GGCGCACGCGGCCGGGGAGCGGACGCAGGTTGCTTGCAGGACGTGGCGTCGGACCCGACA 230
                      ******************************    **************************

consensus_7562#0      CT-GCCGCGCACAAAGACGGTGAGGT---GCCCGCCTGCGGG-CACGGCGAGCCGTCTTC 351
consensus_7562#1      CTTGCCGCGCACAAAGACGGTTAGGTTGCGCCGCCTTGCGGGGCACGGCGANGCGTCTTT 290
                      ** ****************** ****   ***  * ****** ********  ****** 

consensus_7562#0      TTCC---AGGCCACCGCCCGCGGCGA-GGAGGGCATGACC-CTCTTCTTCGTCT-GCTGC 405
consensus_7562#1      CTTTCCAAGGCCACCGCCCGCGGCGAAGGAGGGCATTACCTCTTTNTTTCGTCTTGCTTG 350
                       *     ******************* ********* *** ** *  ******* ***  

consensus_7562#0      AACCTCACCTGCGCCCACCGATGGAGGGAATGATTTTACTTCTTTCTCTTCTTCTCCACA 465
consensus_7562#1      CACCTTAACTTTGNGCCACGATTGANG--ATGATTTTANTTTTTT--------------- 393
                       **** * **  *  *  **** ** *  ********* ** ***               

consensus_7562#0      ACTACAACTTGATCGATCATGATGATCAACTTTCCCGGTTTGCTTAAACAAGACAATTGA 525
consensus_7562#1      ------------------------------------------------------------
                                                                                  

consensus_7562#0      GTACTAGTTTGTAAATGGATGGAGGTTTAGCAATAGGTAGGGTTCTCTGCCTTCATCGGG 585
consensus_7562#1      ------------------------------------------------------------
                                                                                  

consensus_7562#0      CTCATGTTTTATCTACTTGTCTTGTTTAACTCGTACTCCTTCGATGCTAGATCAATGTTA 645
consensus_7562#1      ------------------------------------------------------------
                                                                                  

consensus_7562#0      ACTTGGGATGCTAATTGTTGAATCAGCAGACGATACATGG 685
consensus_7562#1      ----------------------------------------