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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7573#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1744 fasta sequence
[CGAGAAGCTACCCTCGAGTCCGACGGAGAAGGGGAGGGCTACCGCCTTCTGCGCCGCCGCCGCCGCCGCCGCGGCAGGTTGGCCGCCTCCGATCGAGTCCCGCTGGGGTGAGCTTGCCCCGGCGCCCGCCGCTTGTTCGACAAAATGGCTGACCGGAAGAAGTGCAAGGCGGCGGCGGTCGCCACCACGGATGGCGGTGGCGAGGACCGCATCAGCGCCCTTCCGGACGAGGTCCTCCAGCGGGCGCTCTCCTTCCTGCCCTCCCGCGACGTGGTGCGGACGTGCGTGCTCTCCCGCCGCTGGCGCCACCAGTGGAAGTCCGTGCCCGCCCTGCGCATCTACGCGTTCGATGATTGCCGGGACGTCCAGCACCTGAGTGATTTCGTCACCAACTTTCTGCTCCGGCGCAACCGGTTGGCTCTACATGAATGCGACATCACATGCTTTGACGAGGGAGACGGTTGTGAGGTGTTCGGGGAGAACGCCAGACAGTGGATCCGGTATGCTGTATCGTGCCAAGTTCGGGTGCTTCGTGTTTCTGTTGAAGCGCACACCCGTCTATTTGGTGCGCCTCTCAAAGCCCAGCGTTTGAAGAGATTAGAACTTTTCAGCGTGGAGTTGGGGGCCTTCTCCCTTGATTTCTCTAGCTGCAGGGAGTTGGAGGAGTTGGAGCTGGGAGGTTGCATCATCAAAGACAAAGTAAAGCAGATCTTATCAGAATCATTAAGACGTCTGAGAATCGAAGGATGTGATTTTTTCCGAAATCGCACTCGCATTTCTTGCCCAAATCTCATTTCCTTGGAGATTACCGATTTTACCTTGTACACTCCAGTGCTCATGAGCATGCCTTCCTTGGCATCGGCATTTATCAGGTTTGGTGAACACTGTGCTGATTCTTGTGACTGCTACTATTACGGCGAATTTGGTCCCGATTATACTGGATGCCATCACAGTACAGTTAAGGGCAATGGCACTGTGCTTCTCAATGGTTTATCAGATGCCATCCAATTAGAGTTGATAAGTGGTGCCGGAGTGTTCATTTTCAGAAGGGATTTTAGATGTTGCCCTACATTTAACAAGCTGAAAACACTGTTGCTCAATGAATGGTGTATGGCTGCTGACTCCAGCGCACTAATTTACTTCCTCCAACACTCACCGGTTCTAGAGAAACTTACTCTTCAACTTCGGAAGAGCCAACGTACTATGGTCAAAAGAGGTAGCACGAACAAAAATCAGAATGAAAAATTCTTGGTGTCAAAGCATCTCAAGTTAGTTGAAATTAAATACTGTGAGGATGAGATGGTTCAACAAGTTTTACATGTCCTAAGTGCTTGTGGCATACCATCCGAGAAAATTATCATCCAACGGATAAGCTCATGGGCTTCTGGAGGTTTTAGTTTCGAGCAGAGGAAATAGGCTCGTTGATTGTTGAGAATTGTGCCCCTGAATCTGGCGCCACGAAGCTGCTGGCTTCCACGTCTGTCTATCAAGATCATGGGTAGAGTGACATTCTTAGGAACTAGTAGTAGTAGAATGAGCAGCCTGACTTGCTTGTTGGGACTAGTATGTTTCGTGTGAATATCTGATGGCACATGGCATGTTTCTTGTGCTTCCTTCTGATTAAACTCATTCATGTTTGGTAATGCCTGGAGAAATTGTGTTAATATGTGCTGTTCTTGAGTAGAAGCTGAAACTGCAGCCTGAACTGAAACACTGCTGAAACTTGTGTGTCCAACAGAGCTCT]
[+] EMBL AK101552 [CGAGAAGCTACCCTCGAGTCCGACGGAGAAGGGGAGGGCTACCGCCTTCTGCGCCGCCGCCGCCGCCGCCGCGGCAGGTTGGCCGCCTCCGATCGAGTCCCGCTGGGGTGAGCTTGCCCCGGCGCCCGCCGCTTGTTCGACAAAATGGCTGACCGGAAGAAGTGCAAGGCGGCGGCGGTCGCCACCACGGATGGCGGTGGCGAGGACCGCATCAGCGCCCTTCCGGACGAGGTCCTCCAGCGGGCGCTCTCCTTCCTGCCCTCCCGCGACGTGGTGCGGACGTGCGTGCTCTCCCGCCGCTGGCGCCACCAGTGGAAGTCCGTGCCCGCCCTGCGCATCTACGCGTTCGATGATTGCCGGGACGTCCAGCACCTGAGTGATTTCGTCACCAACTTTCTGCTCCGGCGCAACCGGTTGGCTCTACATGAATGCGACATCACATGCTTTGACGAGGGAGACGGTTGTGAGGTGTTCGGGGAGAACGCCAGACAGTGGATCCGGTATGCTGTATCGTGCCAAGTTCGGGTGCTTCGTGTTTCTGTTGAAGCGCACACCCGTCTATTTGGTGCGCCTCTCAAAGCCCAGCGTTTGAAGAGATTAGAACTTTTCAGCGTGGAGTTGGGGGCCTTCTCCCTTGATTTCTCTAGCTGCAGGGAGTTGGAGGAGTTGGAGCTGGGAGGTTGCATCATCAAAGACAAAGTAAAGCAGATCTTATCAGAATCATTAAGACGTCTGAGAATCGAAGGATGTGATTTTTTCCGAAATCGCACTCGCATTTCTTGCCCAAATCTCATTTCCTTGGAGATTACCGATTTTACCTTGTACACTCCAGTGCTCATGAGCATGCCTTCCTTGGCATCGGCATTTATCAGGTTTGGTGAACACTGTGCTGATTCTTGTGACTGCTACTATTACGGCGAATTTGGTCCCGATTATACTGGATGCCATCACAGTACAGTTAAGGGCAATGGCACTGTGCTTCTCAATGGTTTATCAGATGCCATCCAATTAGAGTTGATAAGTGGTGCCGGAGTGTTCATTTTCAGAAGGGATTTTAGATGTTGCCCTACATTTAACAAGCTGAAAACACTGTTGCTCAATGAATGGTGTATGGCTGCTGACTCCAGCGCACTAATTTACTTCCTCCAACACTCACCGGTTCTAGAGAAACTTACTCTTCAACTTCGGAAGAGCCAACGTACTATGGTCAAAAGAGGTAGCACGAACAAAAATCAGAATGAAAAATTCTTGGTGTCAAAGCATCTCAAGTTAGTTGAAATTAAATACTGTGAGGATGAGATGGTTCAACAAGTTTTACATGTCCTAAGTGCTTGTGGCATACCATCCGAGAAAATTATCATCCAACGGATAAGCTCATGGGCTTCTGGAGGTTTTAGTTTCGAGCAGAGGAAATAGGCTCGTTGATTGTTGAGAATTGTGCCCCTGAATCTGGCGCCACGAAGCTGCTGGCTTCCACGTCTGTCTATCAAGATCATGGGTAGAGTGACATTCTTAGGAACTAGTAGTAGTAGAATGAGCAGCCTGACTTGCTTGTTGGGACTAGTATGTTTCGTGTGAATATCTGATGGCACATGGCATGTTTCTTGTGCTTCCTTCTGATTAAACTCATTCATGTTCGGTAATGCCTGGAGAAATTGTGTTAATATGTGCTGTTCTTGAGTAGAAGCTGAAACTGCAGCCTGAACTGAAACACTGCTGAAAC ]
[+] EMBL AK063985 [ AAGCTACCCTCGAGTCCGACGGAGAAGGGGAGGGCTACCGCCTTCTGCGCCGCCGCCGCCGCCGCCGCGGCAGGTTGGCCGCCTCCGATCGAGTCCCGCTGGGGTGAGCTTGCCCCGGCGCCCGCCGCTTGTTCGACAAAATGGCTGACCGGAAGAAGTGCAAGGCGGCGGCGGTCGCCACCACGGATGGCGGTGGCGAGGACCGCATCAGCGCCCTTCCGGACGAGGTCCTCCAGCGGGCGCTCTCCTTCCTGCCCTCCCGCGACGTGGTGCGGACGTGCGTGCTCTCCCGCCGCTGGCGCCACCAGTGGAAGTCCGTGCCCGCCCTGCGCATCTACGCGTTCGATGATTGCCGGGACGTCCAGCACCTGAGTGATTTCGTCACCAACTTTCTGCTCCGGCGCAACCGGTTGGCTCTACATGAATGCGACATCACATGCTTTGACGAGGGAGACGGTTGTGAGGTGTTCGGGGAGAACGCCAGACAGTGGATCCGGTATGCTGTATCGTGCCAAGTTCGGGTGCTTCGTGTTTCTGTTGAAGCGCACACCCGTCTATTTGGTGCGCCTCTCAAAGCCCAGCGTTTGAAGAGATTAGAACTTTTCAGCGTGGAGTTGGGGGCCTTCTCCCTTGATTTCTCTAGCTGCAGGGAGTTGGAGGAGTTGGAGCTGGGAGGTTGCATCATCAAAGACAAAGTAAAGCAGATCTTATCAGAATCATTAAGACGTCTGAGAATCGAAGGATGTGATTTTTTCCGAAATCGCACTCGCATTTCTTGCCCAAATCTCATTTCCTTGGAGATTACCGATTTTACCTTGTACACTCCAGTGCTCATGAGCATGCCTTCCTTGGCATCGGCATTTATCAGGTTTGGTGAACACTGTGCTGATTCTTGTGACTGCTACTATTACGGCGAATTTGGTCCCGATTATACTGGATGCCATCACAGTACAGTTAAGGGCAATGGCACTGTGCTTCTCAATGGTTTATCAGATGCCATCCAATTAGAGTTGATAAGTGGTGCCGGAGTGTTCATTTTCAGAAGGGATTTTAGATGTTGCCCTACATTTAACAAGCTGAAAACACTGTTGCTCAATGAATGGTGTATGGCTGCTGACTCCAGCGCACTAATTTACTTCCTCCAACACTCACCGGTTCTAGAGAAACTTACTCTTCAACTTCGGAAGAGCCAACGTACTATGGTCAAAAGAGGTAGCACGAACAAAAATCAGAATGAAAAATTCTTGGTGTCAAAGCATCTCAAGTTAGTTGAAATTAAATACTGTGAGGATGAGATGGTTCAACAAGTTTTACATGTCCTAAGTGCTTGTGGCATACCATCCGAGAAAATTATCATCCAACGGATAAGCTCATGGGCTTCTGGAGGTTTTAGTTTCGAGCAGAGGAAATAGGCTCGTTGATTGTTGAGAATTGTGCCCCTGAATCTGGCGCCACGAAGCTGCTGGCTTCCACGTCTGTCTATCAAGATCATGGGTAGAGTGACATTCTTAGGAACTAGTAGTAGTAGAATGAGCAGCCTGACTTGCTTGTTGGGACTAGTATGTTTCGTGTGAATATCTGATGGCACATGGCATGTTTCTTGTGCTTCCTTCTGATTAAACTCATTCATGTTTGGTAATGCCTGGAGAAATTGTGTTAATATGTGCTGTTCTTGAGTAGAAGCTGAAACTGCAGCCTGAACTGAAACACTGCTGAAACTTGTGTGTCCAACAGAGCTCT]
[-] EMBL CF281219 [ CTATGGTCAAAAGAGGTAGCACGAACAAAAATCAGAATGAAAAATTCTTGGTGTCAAAGCATCTCAAGTTAGTTGAAATTAAATACTGTGAGGATGAGATGGTTCAACAAGTTTTACATGTCCTAAGTGCTTGTGGCATACCATCCGAGAAAATTATCATCCAACGGATAAGCTCATGGGCTTCTGGAGGTTTTATTTTCGAGCAGAGGAAATAGGCTCGTTGATTGTTGAGAATTGTGCCCCTGAATCTGGCGCCACGAAGCTGCTGGCTTCCACGTCTGTCTATCAAGATCATGGGTAGAGTGACATTAAAAAAAACTAGTAGTAGTAGAATGAGCAGCCTGACTTGCTTGTAGNGACTAATATGTTTCGTGTGAATATCTGATGGCACATGGCATGTTTCTTGTGCTTCCTTCTGATTAAACTCATTCATGTTTGGTAATGCCTGGAGAAATTGTGTTAATATGTGCTGTTCT ]
consensusID : consensus_7573#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence
[GAGAAGCTACCCTCGAGTCCGACGGAGAAGGGGAGGGCTACCGCCTTCTGCGCCGCCGCCGCCGCCGCCGCGGCAGGTTGGCCGCCTCCGATCGAGTCCCGCTGGGGTGAGTTCATTTTCAGAAGGGATTTTAGATGTTGCCCTACATTTAACAAGCTGAAAACACTGTTGCTCAATGAATGGTGTATGGCTGCTGACTCCAGCGCACTAATTTACTTCCTCCAACACTCACCGGTTCTAGAGAAACTTACTCTTCAACTTCGGAAGAGCCAACGTACTATGGTCAAAAGAGGTAGCACGAACAAAAATCAGAATGAAAAATTCTTGGTGTCAAAGCATCTCAAGTTAGTTGAAATTAAATACTGTGAGGATGAGATGGTTCAACAAGTTTTACATGTCCTAAGTGCTTGTGGCATACCATCCGAGAAAATTATCATCCAACGGATAAGCTCATGGGCTTCTGGGAGTTTTAGTTTCGAGCAGAGGAAATAGGCTCGTTGATTGTTGAGAATTGTGCCCCTGAATCTGGCGCCACGAAGCTGCTGGCTTCCACGTCTGTCTATCAAGATCATGGGTAGAG]
[+] EMBL CF281218 [GAGAAGCTACCCTCGAGTCCGACGGAGAAGGGGAGGGCTACCGCCTTCTGCGCCGCCGCCGCCGCCGCCGCGGCAGGTTGGCCGCCTCCGATCGAGTCCCGCTGGGGTGAGTTCATTTTCAGAAGGGATTTTAGATGTTGCCCTACATTTAACAAGCTGAAAACACTGTTGCTCAATGAATGGTGTATGGCTGCTGACTCCAGCGCACTAATTTACTTCCTCCAACACTCACCGGTTCTAGAGAAACTTACTCTTCAACTTCGGAAGAGCCAACGTACTATGGTCAAAAGAGGTAGCACGAACAAAAATCAGAATGAAAAATTCTTGGTGTCAAAGCATCTCAAGTTAGTTGAAATTAAATACTGTGAGGATGAGATGGTTCAACAAGTTTTACATGTCCTAAGTGCTTGTGGCATACCATCCGAGAAAATTATCATCCAACGGATAAGCTCATGGGCTTCTGGGAGTTTTAGTTTCGAGCAGAGGAAATAGGCTCGTTGATTGTTGAGAATTGTGCCCCTGAATCTGGCGCCACGAAGCTGCTGGCTTCCACGTCTGTCTATCAAGATCATGGGTAGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7573#0 CGAGAAGCTACCCTCGAGTCCGACGGAGAAGGGGAGGGCTACCGCCTTCTGCGCCGCCGC 60
consensus_7573#1 ------------------------------------------------------------
consensus_7573#0 CGCCGCCGCCGCGGCAGGTTGGCCGCCTCCGATCGAGTCCCGCTGGGGTGAGCTTGCCCC 120
consensus_7573#1 ------------------------------------------------------------
consensus_7573#0 GGCGCCCGCCGCTTGTTCGACAAAATGGCTGACCGGAAGAAGTGCAAGGCGGCGGCGGTC 180
consensus_7573#1 ------------------------------------------------------------
consensus_7573#0 GCCACCACGGATGGCGGTGGCGAGGACCGCATCAGCGCCCTTCCGGACGAGGTCCTCCAG 240
consensus_7573#1 ------------------------------------------------------------
consensus_7573#0 CGGGCGCTCTCCTTCCTGCCCTCCCGCGACGTGGTGCGGACGTGCGTGCTCTCCCGCCGC 300
consensus_7573#1 ------------------------------------------------------------
consensus_7573#0 TGGCGCCACCAGTGGAAGTCCGTGCCCGCCCTGCGCATCTACGCGTTCGATGATTGCCGG 360
consensus_7573#1 ------------------------------------------------------------
consensus_7573#0 GACGTCCAGCACCTGAGTGATTTCGTCACCAACTTTCTGCTCCGGCGCAACCGGTTGGCT 420
consensus_7573#1 ------------------------------------------------------------
consensus_7573#0 CTACATGAATGCGACATCACATGCTTTGACGAGGGAGACGGTTGTGAGGTGTTCGGGGAG 480
consensus_7573#1 ------------------------------------------------------------
consensus_7573#0 AACGCCAGACAGTGGATCCGGTATGCTGTATCGTGCCAAGTTCGGGTGCTTCGTGTTTCT 540
consensus_7573#1 ------------------------------------------------------------
consensus_7573#0 GTTGAAGCGCACACCCGTCTATTTGGTGCGCCTCTCAAAGCCCAGCGTTTGAAGAGATTA 600
consensus_7573#1 ------------------------------------------------------------
consensus_7573#0 GAACTTTTCAGCGTGGAGTTGGGGGCCTTCTCCCTTGATTTCTCTAGCTGCAGGGAGTTG 660
consensus_7573#1 ------------------------------------------------------------
consensus_7573#0 GAGGAGTTGGAGCTGGGAGGTTGCATCATCAAAGACAAAGTAAAGCAGATCTTATCAGAA 720
consensus_7573#1 ------------------------------------------------------------
consensus_7573#0 TCATTAAGACGTCTGAGAATCGAAGGATGTGATTTTTTCCGAAATCGCACTCGCATTTCT 780
consensus_7573#1 ------------------------------------------------------------
consensus_7573#0 TGCCCAAATCTCATTTCCTTGGAGATTACCGATTTTACCTTGTACACTCCAGTGCTCATG 840
consensus_7573#1 ------------------------------------------------------------
consensus_7573#0 AGCATGCCTTCCTTGGCATCGGCATTTATCAGGTTTGGTGAACACTGTGCTGATTCTTGT 900
consensus_7573#1 ------------------------------------------------------------
consensus_7573#0 GACTGCTACTATTACGGCGAATTTGGTCCCGATTATACTGGATGCCATCACAG-TACAGT 959
consensus_7573#1 ----------------GAGAAGCTACCCTCGAGTCCGACGGAGAAGGGGAGGGCTACCGC 44
* *** * * *** * *** * * *** *
consensus_7573#0 TAAGGGCAATGGCACTGTGCTTCTCAATGGTTTATCAGATGCCATCCAATTAGAGTTGAT 1019
consensus_7573#1 CTTCTGCGCCGCCGCCGC-CGCCGCCGCGGCAGGTTGGCCGCC-TCCGATC-GAGTC--C 99
** * * * * * * * ** * * *** *** ** ****
consensus_7573#0 AAGTGGTGCCGGAGTGTTCATTTTCAGAAGGGATTTTAGATGTTGCCCTACATTTAACAA 1079
consensus_7573#1 CGCTGG----GGTGAGTTCATTTTCAGAAGGGATTTTAGATGTTGCCCTACATTTAACAA 155
*** ** * *********************************************
consensus_7573#0 GCTGAAAACACTGTTGCTCAATGAATGGTGTATGGCTGCTGACTCCAGCGCACTAATTTA 1139
consensus_7573#1 GCTGAAAACACTGTTGCTCAATGAATGGTGTATGGCTGCTGACTCCAGCGCACTAATTTA 215
************************************************************
consensus_7573#0 CTTCCTCCAACACTCACCGGTTCTAGAGAAACTTACTCTTCAACTTCGGAAGAGCCAACG 1199
consensus_7573#1 CTTCCTCCAACACTCACCGGTTCTAGAGAAACTTACTCTTCAACTTCGGAAGAGCCAACG 275
************************************************************
consensus_7573#0 TACTATGGTCAAAAGAGGTAGCACGAACAAAAATCAGAATGAAAAATTCTTGGTGTCAAA 1259
consensus_7573#1 TACTATGGTCAAAAGAGGTAGCACGAACAAAAATCAGAATGAAAAATTCTTGGTGTCAAA 335
************************************************************
consensus_7573#0 GCATCTCAAGTTAGTTGAAATTAAATACTGTGAGGATGAGATGGTTCAACAAGTTTTACA 1319
consensus_7573#1 GCATCTCAAGTTAGTTGAAATTAAATACTGTGAGGATGAGATGGTTCAACAAGTTTTACA 395
************************************************************
consensus_7573#0 TGTCCTAAGTGCTTGTGGCATACCATCCGAGAAAATTATCATCCAACGGATAAGCTCATG 1379
consensus_7573#1 TGTCCTAAGTGCTTGTGGCATACCATCCGAGAAAATTATCATCCAACGGATAAGCTCATG 455
************************************************************
consensus_7573#0 GGCTTCTGGAGGTTTTAGTTTCGAGCAGAGGAAATAGGCTCGTTGATTGTTGAGAATTGT 1439
consensus_7573#1 GGCTTCTGGGAGTTTTAGTTTCGAGCAGAGGAAATAGGCTCGTTGATTGTTGAGAATTGT 515
********* *************************************************
consensus_7573#0 GCCCCTGAATCTGGCGCCACGAAGCTGCTGGCTTCCACGTCTGTCTATCAAGATCATGGG 1499
consensus_7573#1 GCCCCTGAATCTGGCGCCACGAAGCTGCTGGCTTCCACGTCTGTCTATCAAGATCATGGG 575
************************************************************
consensus_7573#0 TAGAGTGACATTCTTAGGAACTAGTAGTAGTAGAATGAGCAGCCTGACTTGCTTGTTGGG 1559
consensus_7573#1 TAGAG------------------------------------------------------- 580
*****
consensus_7573#0 ACTAGTATGTTTCGTGTGAATATCTGATGGCACATGGCATGTTTCTTGTGCTTCCTTCTG 1619
consensus_7573#1 ------------------------------------------------------------
consensus_7573#0 ATTAAACTCATTCATGTTTGGTAATGCCTGGAGAAATTGTGTTAATATGTGCTGTTCTTG 1679
consensus_7573#1 ------------------------------------------------------------
consensus_7573#0 AGTAGAAGCTGAAACTGCAGCCTGAACTGAAACACTGCTGAAACTTGTGTGTCCAACAGA 1739
consensus_7573#1 ------------------------------------------------------------
consensus_7573#0 GCTCT 1744
consensus_7573#1 -----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||