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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7665#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 979 fasta sequence
[CAGAAGATGATGCTGCAGTGATCCCGTCCACTAGCTGGTGAATTGGAGAGACGGATGGAGCTCGAGCTCGGCCTCAGGCTCGCGCTGCCGTCGCCGTCGCCGTCGCCGGCGACGGCGACGGCGGCTGGGAGTGAGCTTGACCTTCTCAACAGCGCGCCGGGGTCCTGCCGCAAGAGGGGCTTCGAGGAGGCGCTCGGTGGGTTCAAAACCGACGACGACAACGACGACGGCAATGGCCGCGGCGGTGACGGCGATTCCGACGGCGAAATGGGCAACAAGAGGAGGAAGCTGGTGGGGTGGCCACCGGTGAAGTGCTTGCACCGGCGGCGCGACGGTGGCTGCGGTGGCGGATATGTGAAGGTGAAGATGGAGGGGTTGGCCATCGGGAGGAAGCTGGACTTGTCCATCCTCGGCTCATACGCTGAGCTGCTCGACACGCTCCACCTTATGTTCCCCTCCACTAACCAAGAGGATGGGCACGATCGTCGTCGACGTCACCCATACGCTGTCACCTACGAGGATGGGGAAGGAGACTGGATGCAGGTCGGAGACGTGCCATGGGAGGCCTTTGCCAAGTCGGTGAAACGGCTCAAGATACTGGTGTAACTGACTGCAAATTAAGCTACTAGTACTAGTCTTTACTACTTCGAATAAAATTGTACGTGAACGGGATTATTTTGTTCACGTTTCTCTCATCATAAATGTGTAGTGTTTCAGCAATTTCATAAGCATGACGAATGAAATCTCGTAGCTGTTGTCATCAATCACCTTGCATTTCGTGTCAAACTACATCTGTGGCCAGCGCACAGTAGTGTTAGTATAGTGTACACCGTAGAGTCACCTCGCTGTGATCAGCACGTGCATGCATCTGTATAATACACCGCCACATATGCACAGGATGGTACTGAATACTGAGCATATCCTGTACGGGGAGTTCAGATATGGGTGTTATGGCCTACCAAAGTGAATCTTATCACAT]
[+] EMBL AK102541 [CAGAAGATGATGCTGCAGTGATCCCGTCCACTAGCTGGTGAATTGGAGAGACGGATGGAGCTCGAGCTCGGCCTCAGGCTCGCGCTGCCGTCGCCGTCGCCGTCGCCGGCGACGGCGACGGCGGCTGGGAGTGAGCTTGACCTTCTCAACAGCGCGCCGGGGTCCTGCCGCAAGAGGGGCTTCGAGGAGGCGCTCGGTGGGTTCAAAACCGACGACGACAACGACGACGGCAATGGCCGCGGCGGTGACGGCGATTCCGACGGCGAAATGGGCAACAAGAGGAGGAAGCTGGTGGGGTGGCCACCGGTGAAGTGCTTGCACCGGCGGCGCGACGGTGGCTGCGGTGGCGGATATGTGAAGGTGAAGATGGAGGGGTTGGCCATCGGGAGGAAGCTGGACTTGTCCATCCTCGGCTCATACGCTGAGCTGCTCGACACGCTCCACCTTATGTTCCCCTCCACTAACCAAGAGGATGGGCACGATCGTCGTCGACGTCACCCATACGCTGTCACCTACGAGGATGGGGAAGGAGACTGGATGCAGGTCGGAGACGTGCCATGGGAGGCCTTTGCCAAGTCGGTGAAACGGCTCAAGATACTGGTGTAACTGACTGCAAATTAAGCTACTAGTACTAGTCTTTACTACTTCGAATAAAATTGTACGTGAACGGGATTATTTTGTTCACGTTTCTCTCATCATAAATGTGTAGTGTTTCAGCAATTTCATAAGCATGACGAATGAAATCTCGTAGCTGTTGTCATCAATCACCTTGCATTTCGTGTCAAACTACATCTGTGGCCAGCGCACAGTAGTGTTAGTATAGTGTACACCGTAGAGTCACCTCGCTGTGATCAGCACGTGCATGCATCTGTATAATACACCGCCACATATGCACAGGATGGTACTGAATACTGAGCATATCCTGTACGGGGAGTTCAGATATGGGTGTTATGGCCTACCAAAGTGAATCTTATCACAT]
consensusID : consensus_7665#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 332 fasta sequence
[AGCTGGTGAATTGGAGAGACGGATGGAGCTCGAGCTCGGCCTCAGGCTCGCGCTGCCGTCNCCGTCNNCGTCGCCGGCGAGCGGTCNTTGGNGNGNANGNTGNANGCTNTGACCTTTCTCAACAGCGCGCCGGGGTCCTGCCGCAAGAGGGGCTTCGAGGAGGCGCTCGGTGGGTTCAAAACCGACGACGACAACGACGACGGCAATGGCCGCGGCGGTGACGNCGATTCCGACGGCGAAATGGGCAACAAGAGGAGGAAGCTGGTGGGGTGGNCACCGGTGAAGTGCTTTCACCGGCGNCGCGACGGTGGCTTNCGGTGGCGGATATGTGA]
[+] EMBL OSS4339A [AGCTGGTGAATTGGAGAGACGGATGGAGCTCGAGCTCGGCCTCAGGCTCGCGCTGCCGTCNCCGTCNNCGTCGCCGGCGAGCGGTCNTTGGNGNGNANGNTGNANGCTNTGACCTTTCTCAACAGCGCGCCGGGGTCCTGCCGCAAGAGGGGCTTCGAGGAGGCGCTCGGTGGGTTCAAAACCGACGACGACAACGACGACGGCAATGGCCGCGGCGGTGACGNCGATTCCGACGGCGAAATGGGCAACAAGAGGAGGAAGCTGGTGGGGTGGNCACCGGTGAAGTGCTTTCACCGGCGNCGCGACGGTGGCTTNCGGTGGCGGATATGTGA]
consensusID : consensus_7665#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 270 fasta sequence
[GATGCAGGTCGGAGACGTGCCATGGGAGGCCTTTGCCAAGTCGGTGNAACGGCTCAAGATACTGGTGTAACTGACTGCAAATTAAGCTACTAGTACTAGTCTTTACTACTTCGAATAAAATTGTACGTGAACGGGATTATTTTGTTCACGTTTCTCTCATCATAAATGTGTAGTGTTTCAGCAATTTCATAAGCATGACGAATGAAATCTCGTAGCTGTTGTCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU033170 [GATGCAGGTCGGAGACGTGCCATGGGAGGCCTTTGCCAAGTCGGTGNAACGGCTCAAGATACTGGTGTAACTGACTGCAAATTAAGCTACTAGTACTAGTCTTTACTACTTCGAATAAAATTGTACGTGAACGGGATTATTTTGTTCACGTTTCTCTCATCATAAATGTGTAGTGTTTCAGCAATTTCATAAGCATGACGAATGAAATCTCGTAGCTGTTGTCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF328094 [ TTTCAGCAATTTCATAAGCATGACGAATGAAATCTCGTAGCTGTTGTCATCAAAAAAAAAAAAAAAAAAAA ]
[-] EMBL CF328093 [ TTCAGCAATTTCATAAGCATGACGAATGAAATTTCGTAGCTGTTGTCATCAAAAAAAAAAAAAAAAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7665#0 CAGAAGATGATGCTGCAGTGATCCCGTCCACTAGCTGGTGAATTGGAGAGACGGATGGAG 60
consensus_7665#1 --------------------------------AGCTGGTGAATTGGAGAGACGGATGGAG 28
consensus_7665#2 ------------------------------------GATGCAGGTCGGAGACG--TGCCA 22
* ** * ****** **
consensus_7665#0 CTCGAGCTCGGCCTCAGGCTCGCGCTGCCGTCGCCGTCGCCGTCGCCGGCGA-CGGCGAC 119
consensus_7665#1 CTCGAGCTCGGCCTCAGGCTCGCGCTGCCGTCNCCGTCNNCGTCGCCGGCGAGCGGTCNT 88
consensus_7665#2 TGGGAGGCCTTTGCCAAGTCGGTGNAACGGCTCAAGATACTGGTGTAACTGACTGCAAAT 82
*** * ** * * * * * * * * ** *
consensus_7665#0 GGCGGCTGGGAGTGAGC---TTG--ACCTT-CTCAACAGCGCGC-----CGGGGTCCTGC 168
consensus_7665#1 TGGNGNGNANGNTGNANGCTNTG--ACCTTTCTCAACAGCGCGC-----CGGGGTCCTGC 141
consensus_7665#2 TAAGCTACTAGTACTAGTCTTTACTACTTCGAATAAAATTGTACGTGAACGGGATTATTT 142
* ** * ** * * * **** * *
consensus_7665#0 CGCAAGAGGGGCTTCGAGGAGGCGCTCGGTGGGTTCAAAACCGACGACGACAACGACGAC 228
consensus_7665#1 CGCAAGAGGGGCTTCGAGGAGGCGCTCGGTGGGTTCAAAACCGACGACGACAACGACGAC 201
consensus_7665#2 TGTTCACGTTTCTCTCATCATAAATGTGTAGTGTTTCAGCAATTTCATAAGCATGACGAA 202
* * ** * * * * *** * * * * *****
consensus_7665#0 GGCAATGGCCGCGGCGGTGACGGCGATTCCGACGGCGAAATGGGCAACAAGAGGAGGAAG 288
consensus_7665#1 GGCAATGGCCGCGGCGGTGACGNCGATTCCGACGGCGAAATGGGCAACAAGAGGAGGAAG 261
consensus_7665#2 TGAAATCTCGTAGCTGTTGTCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 262
* *** * * * ** * * * * *** ** ** * * **
consensus_7665#0 CTGGTGGGGTGGCCACCGGTGAAGTGCTTGCACCGGCGGCGCGACGGTGGCT-GCGGTGG 347
consensus_7665#1 CTGGTGGGGTGGNCACCGGTGAAGTGCTTTCACCGGCGNCGCGACGGTGGCTTNCGGTGG 321
consensus_7665#2 AAAAAAAA---------------------------------------------------- 270
consensus_7665#0 CGGATATGTGAAGGTGAAGATGGAGGGGTTGGCCATCGGGAGGAAGCTGGACTTGTCCAT 407
consensus_7665#1 CGGATATGTGA------------------------------------------------- 332
consensus_7665#2 ------------------------------------------------------------
consensus_7665#0 CCTCGGCTCATACGCTGAGCTGCTCGACACGCTCCACCTTATGTTCCCCTCCACTAACCA 467
consensus_7665#1 ------------------------------------------------------------
consensus_7665#2 ------------------------------------------------------------
consensus_7665#0 AGAGGATGGGCACGATCGTCGTCGACGTCACCCATACGCTGTCACCTACGAGGATGGGGA 527
consensus_7665#1 ------------------------------------------------------------
consensus_7665#2 ------------------------------------------------------------
consensus_7665#0 AGGAGACTGGATGCAGGTCGGAGACGTGCCATGGGAGGCCTTTGCCAAGTCGGTGAAACG 587
consensus_7665#1 ------------------------------------------------------------
consensus_7665#2 ------------------------------------------------------------
consensus_7665#0 GCTCAAGATACTGGTGTAACTGACTGCAAATTAAGCTACTAGTACTAGTCTTTACTACTT 647
consensus_7665#1 ------------------------------------------------------------
consensus_7665#2 ------------------------------------------------------------
consensus_7665#0 CGAATAAAATTGTACGTGAACGGGATTATTTTGTTCACGTTTCTCTCATCATAAATGTGT 707
consensus_7665#1 ------------------------------------------------------------
consensus_7665#2 ------------------------------------------------------------
consensus_7665#0 AGTGTTTCAGCAATTTCATAAGCATGACGAATGAAATCTCGTAGCTGTTGTCATCAATCA 767
consensus_7665#1 ------------------------------------------------------------
consensus_7665#2 ------------------------------------------------------------
consensus_7665#0 CCTTGCATTTCGTGTCAAACTACATCTGTGGCCAGCGCACAGTAGTGTTAGTATAGTGTA 827
consensus_7665#1 ------------------------------------------------------------
consensus_7665#2 ------------------------------------------------------------
consensus_7665#0 CACCGTAGAGTCACCTCGCTGTGATCAGCACGTGCATGCATCTGTATAATACACCGCCAC 887
consensus_7665#1 ------------------------------------------------------------
consensus_7665#2 ------------------------------------------------------------
consensus_7665#0 ATATGCACAGGATGGTACTGAATACTGAGCATATCCTGTACGGGGAGTTCAGATATGGGT 947
consensus_7665#1 ------------------------------------------------------------
consensus_7665#2 ------------------------------------------------------------
consensus_7665#0 GTTATGGCCTACCAAAGTGAATCTTATCACAT 979
consensus_7665#1 --------------------------------
consensus_7665#2 --------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||