cluster # 7682

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Oryza sativa
cluster # 7682 cluster # 7682 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7682#0 length = 745 sequences # 3

consensus_7682#1 length = 564 sequences # 1
consensus_7682#2 length = 505 sequences # 1

consensusID : consensus_7682#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 745
fasta sequence

                              [TGCCCTATTCAGCCCTTTTTTTTTTACACTTGGCCTCTCAGCCGCATAATATGAGGTATCAGCGGTAGGGTGATTGTTTCTCAAAAAAAGGAAAAAGAAAAAGGAAAAAATTTCTTTGGGGGTGATTGCGAGAAACCGCATAATATGTTTTAGGACTTTGGACAGTACATGTTGGCAACTTGGTGGTATACATGAACATTTTGCCCACGAATAATGCTAAGTCAGGCACACCTCATGCTAGCAGAGGTTAAAATACCTCACAAAAACTCAAGATGCATTACACCCTACTGAACATGACAGCGTAGGCCTCCACTGTCTCCAATTAGCCTGAAGGAATGTCATCTTGGATGCTAAGAATAAATCCCTGAAGCAGGCTCTGAGCTTTGTCAGCCTGCTCAGGAGTACCAGATATTCGAACAACTTTTTCTATGGCGTCAGGCCTTTCGTCAGCAAGTGTGACAGTGGCACCAGACATCTCGCTTATTTGAGCAAGCTTGCTTCCAGCTCTCATAGTAAGGCTTGCAACAGCACTCTTTGGTATGACAACTTCTAATGTGCTTCTTGTCACTAGAGGAACAGCAAATCGTTTTGCAGCACTTTGCCTCATATCATCATTAATGTTGCTCCCTTGCTCAAACGACATATTTGCACCACCTCCACTATCCTTCCATGAAGCTGGAACATGCTGTGCTTGTTGGTAGGATGGCATTGGAATATCACTTCCCTGGTATGGTCCTCTAGGTGA]

[+] EMBL CB653650             [TGCCCTATTCAGCCCTTTTTTTTTTACACTTGGCCTCTCAGCCGCATAATATGAGGTATCAGCGGTAGGGTGATTGTTTCTCAAAAAAAGGAAAAAGAAAAAGGAAAAAAAAGCGGTGGGGGTGATTGCGAGAAACCGCATAATATGTTTTAGGACTTTGGACAGTACATGTTGGCAACTTGGTGGTATACATGAACATTTTGCCCACGAATAATGCTAAGTCAGGCACACCTCATGCTAGCAGAGGTTAAAATACCTCACAAAAACTCAAGATGCATTACACCCTACTGAACATGACAGCGTAGGCCTCCACTGTCTCCAATTAGCCTGAAGGAATGTCATCTTGGATGCTAAGAATAAATCCCTGAAGCAGGCTCTGAGCTTTGTCAGCCTGCTCAGGAGTACCAGATATTCGAACAACTTTTTCTATGGCGTCAGGCCTTTCGTCAGCAAGTGTGACAGTGGCACCAGACATCTCGCTTATTTGAGCAAGCTTGCTTCCAGCTCTCATAGTAAGGCTTGCAACAGCACTCTTTGGTATGACAACTTCTAATGTGCTTCTTGTCACTAGAGGAACAGCAAATCGTTTTGCAGCACTTTGCCTCATATCATCATTAATGTTGCTCCCTTGCTCAAACGACATATTTGCACCACCTCCACTATCCTTCCATGAAGCTGGAACATGCTGTGCTTGTTGGTAGGATGGCATTGGAATATCACTTCCCTGGTATGGTCCTCTAGGTGA]
[+] EMBL CF327072             [                                                                                                             tTTTCTTTGGGGGTGATTGCGAGAAACCGCATAATATGTTTTAGGACTTTGGACAGTACATGTTGGCAACTTGGTGGTATACATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CF327073             [                                                                                                              TTTCTTTGGGGGTGATTGCGAGAAACCGCATAATATGTTTTAGGACTTTGGACAGTACATG TGGCAACTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]




>consensus_7682#0
TGCCCTATTCAGCCCTTTTTTTTTTACACTTGGCCTCTCAGCCGCATAATATGAGGTATC
AGCGGTAGGGTGATTGTTTCTCAAAAAAAGGAAAAAGAAAAAGGAAAAAATTTCTTTGGG
GGTGATTGCGAGAAACCGCATAATATGTTTTAGGACTTTGGACAGTACATGTTGGCAACT
TGGTGGTATACATGAACATTTTGCCCACGAATAATGCTAAGTCAGGCACACCTCATGCTA
GCAGAGGTTAAAATACCTCACAAAAACTCAAGATGCATTACACCCTACTGAACATGACAG
CGTAGGCCTCCACTGTCTCCAATTAGCCTGAAGGAATGTCATCTTGGATGCTAAGAATAA
ATCCCTGAAGCAGGCTCTGAGCTTTGTCAGCCTGCTCAGGAGTACCAGATATTCGAACAA
CTTTTTCTATGGCGTCAGGCCTTTCGTCAGCAAGTGTGACAGTGGCACCAGACATCTCGC
TTATTTGAGCAAGCTTGCTTCCAGCTCTCATAGTAAGGCTTGCAACAGCACTCTTTGGTA
TGACAACTTCTAATGTGCTTCTTGTCACTAGAGGAACAGCAAATCGTTTTGCAGCACTTT
GCCTCATATCATCATTAATGTTGCTCCCTTGCTCAAACGACATATTTGCACCACCTCCAC
TATCCTTCCATGAAGCTGGAACATGCTGTGCTTGTTGGTAGGATGGCATTGGAATATCAC
TTCCCTGGTATGGTCCTCTAGGTGA

consensusID : consensus_7682#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 564
fasta sequence

                              [GCCCAAGTGACAAGGTTAACAGTTTAGTCGGAACACGTGATGGATTGTTAGAGATGTTACAGGAAGATGTTGGTGTTGATATTAGGCTTACTGATTCTCTTGATGGCTCTGACGAAAGGATCATAATCATCACATCAAGAGAGGGCCCAGACCATGAGCTTTTTCCAGCTCAGGAAGCATTGCTGCACCTCCAAACTCATATTGTAGACCTTGGTCCTGATAAAGACAACATTATTACAACAAGGTTACTTGTCCCTTCAAGTGAAATTGCTTGCTTCGAGGGAAGGGATGGATCATTATCTGATATACAGAGACAGACCAGTGCAAATGTACAGATATTACCAAGGCAAGCTCTTCCATCTTGTGCTCTAGAGTCTGATGAGCTTATACAGATTGTAGGAGAGATTAGAGCTGCACGGGATGCTCTTGTGCAAATAACTGCAAAATTACGGAGTTACTTCTACCGCGAGATTCCTGGTCCTAACCAACTTGGCAATATTACTGTTCATGGCTCCATTTCTCCAGCAAAAGGTTCACCTAGAGGACCATACCAGGGAAGTGATA]

[+] EMBL BP184938             [GCCCAAGTGACAAGGTTAACAGTTTAGTCGGAACACGTGATGGATTGTTAGAGATGTTACAGGAAGATGTTGGTGTTGATATTAGGCTTACTGATTCTCTTGATGGCTCTGACGAAAGGATCATAATCATCACATCAAGAGAGGGCCCAGACCATGAGCTTTTTCCAGCTCAGGAAGCATTGCTGCACCTCCAAACTCATATTGTAGACCTTGGTCCTGATAAAGACAACATTATTACAACAAGGTTACTTGTCCCTTCAAGTGAAATTGCTTGCTTCGAGGGAAGGGATGGATCATTATCTGATATACAGAGACAGACCAGTGCAAATGTACAGATATTACCAAGGCAAGCTCTTCCATCTTGTGCTCTAGAGTCTGATGAGCTTATACAGATTGTAGGAGAGATTAGAGCTGCACGGGATGCTCTTGTGCAAATAACTGCAAAATTACGGAGTTACTTCTACCGCGAGATTCCTGGTCCTAACCAACTTGGCAATATTACTGTTCATGGCTCCATTTCTCCAGCAAAAGGTTCACCTAGAGGACCATACCAGGGAAGTGATA]




>consensus_7682#1
GCCCAAGTGACAAGGTTAACAGTTTAGTCGGAACACGTGATGGATTGTTAGAGATGTTAC
AGGAAGATGTTGGTGTTGATATTAGGCTTACTGATTCTCTTGATGGCTCTGACGAAAGGA
TCATAATCATCACATCAAGAGAGGGCCCAGACCATGAGCTTTTTCCAGCTCAGGAAGCAT
TGCTGCACCTCCAAACTCATATTGTAGACCTTGGTCCTGATAAAGACAACATTATTACAA
CAAGGTTACTTGTCCCTTCAAGTGAAATTGCTTGCTTCGAGGGAAGGGATGGATCATTAT
CTGATATACAGAGACAGACCAGTGCAAATGTACAGATATTACCAAGGCAAGCTCTTCCAT
CTTGTGCTCTAGAGTCTGATGAGCTTATACAGATTGTAGGAGAGATTAGAGCTGCACGGG
ATGCTCTTGTGCAAATAACTGCAAAATTACGGAGTTACTTCTACCGCGAGATTCCTGGTC
CTAACCAACTTGGCAATATTACTGTTCATGGCTCCATTTCTCCAGCAAAAGGTTCACCTA
GAGGACCATACCAGGGAAGTGATA

consensusID : consensus_7682#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 505
fasta sequence

                              [ATANTGNTAAGTCNAGGCACGCNTCAGGNTAGCAGGAGGGTTAAAATGCCTCACAAAAGCTCAGATGCATTNCNCCCNACTGAACATGACAGNGTAGGCCTCCACTGTCTCCAATTAGCCTGAAGGAATGTCATCTTGGATGNTAAGAATAAATCCCTGAAGCAGGCTCTGAGCTTTGTCAGCCTGCTCAGGAGTACCAGATATTCGAACAACTTTTTCTATGGCGTCAGGCCTTTCGTCAGCAAGTGTGACAGTGGCACCAGACATCTCGCTTATTTGAGCAAGCTTGCTTCCAGCTCTCATAGTAAGGCTTGCAACAGCACTCTTTGGTATGACAACTTCTAATGTGCTTCTTGTCACTAGAGGAACAGCAAATCGTTTTGCAGCACTTTGCCTCATATCATCATTAATGTTGCTCCCTTGCTCAAACGACATATTTGCACCACCTCCACTATCCTTCCATGAAGCTGGAACATNCTGTGCTTGTTGCCCCTTGTCTCGTCTC]

[-] EMBL CA766442             [ATANTGNTAAGTCNAGGCACGCNTCAGGNTAGCAGGAGGGTTAAAATGCCTCACAAAAGCTCAGATGCATTNCNCCCNACTGAACATGACAGNGTAGGCCTCCACTGTCTCCAATTAGCCTGAAGGAATGTCATCTTGGATGNTAAGAATAAATCCCTGAAGCAGGCTCTGAGCTTTGTCAGCCTGCTCAGGAGTACCAGATATTCGAACAACTTTTTCTATGGCGTCAGGCCTTTCGTCAGCAAGTGTGACAGTGGCACCAGACATCTCGCTTATTTGAGCAAGCTTGCTTCCAGCTCTCATAGTAAGGCTTGCAACAGCACTCTTTGGTATGACAACTTCTAATGTGCTTCTTGTCACTAGAGGAACAGCAAATCGTTTTGCAGCACTTTGCCTCATATCATCATTAATGTTGCTCCCTTGCTCAAACGACATATTTGCACCACCTCCACTATCCTTCCATGAAGCTGGAACATNCTGTGCTTGTTGCCCCTTGTCTCGTCTC]




>consensus_7682#2
ATANTGNTAAGTCNAGGCACGCNTCAGGNTAGCAGGAGGGTTAAAATGCCTCACAAAAGC
TCAGATGCATTNCNCCCNACTGAACATGACAGNGTAGGCCTCCACTGTCTCCAATTAGCC
TGAAGGAATGTCATCTTGGATGNTAAGAATAAATCCCTGAAGCAGGCTCTGAGCTTTGTC
AGCCTGCTCAGGAGTACCAGATATTCGAACAACTTTTTCTATGGCGTCAGGCCTTTCGTC
AGCAAGTGTGACAGTGGCACCAGACATCTCGCTTATTTGAGCAAGCTTGCTTCCAGCTCT
CATAGTAAGGCTTGCAACAGCACTCTTTGGTATGACAACTTCTAATGTGCTTCTTGTCAC
TAGAGGAACAGCAAATCGTTTTGCAGCACTTTGCCTCATATCATCATTAATGTTGCTCCC
TTGCTCAAACGACATATTTGCACCACCTCCACTATCCTTCCATGAAGCTGGAACATNCTG
TGCTTGTTGCCCCTTGTCTCGTCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7682#0      TGCCCTATTCAGCCCTTTTTTTTTTACACTTGGCCTCTCAGCCGCATAATATGAGGTATC 60
consensus_7682#2      ------------------------------------------------------------
consensus_7682#1      ------------------------------------------------------------
                                                                                  

consensus_7682#0      AGCGGTAGGGTGATTGTTTCTCAAAAAAAGGAAAAAGAAAAAGGAAAAAATTTCTTTGGG 120
consensus_7682#2      ------------------------------------------------------------
consensus_7682#1      ------------------------------------------------------------
                                                                                  

consensus_7682#0      GGTGATTGCGAGAAACCGCATAATATGTTTTAGGACTTTGGACAGTACATGTTGGCAACT 180
consensus_7682#2      ------------------------------------------------------------
consensus_7682#1      ---------------------------------------------------------GCC 3
                                                                                  

consensus_7682#0      TGGTGGTATACATGAACATTTTGCCCACGAATAATGCTAAGTCA---GGCACACCTCATG 237
consensus_7682#2      ------------------------------ATANTGNTAAGTCNA--GGCACGCNTCAGG 28
consensus_7682#1      CAAGTGACAAGGTTAACAGTTTAGTCGGAACACGTGATGGATTGTTAGAGATGTTACAGG 63
                                                        ** *   *     *  *     ** *

consensus_7682#0      CTAGCAGA--GGTTAAAAT--ACCTCACAAAAACTCAAGATGCATTACACCCTACTGAAC 293
consensus_7682#2      NTAGCAGGAGGGTTAAAAT--GCCTCACAAAAGCTCA-GATGCATTNCNCCCNACTGAAC 85
consensus_7682#1      AAGATGTTGGTGTTGATATTAGGCTTACTGATTCTCTTGATG-GCTCTGACGAAAGGATC 122
                                 *** * **    ** **  *  ***  ****   *    *  *  ** *

consensus_7682#0      ATGACAGCGTAGGCCTCCACTGTCTCCAATTAGCCTGAAGGAATGTCATCTTGGATGCTA 353
consensus_7682#2      ATGACAGNGTAGGCCTCCACTGTCTCCAATTAGCCTGAAGGAATGTCATCTTGGATGNTA 145
consensus_7682#1      ATAATCAT-CACATCAAGAGAGGGCCCAG--ACCATGAGCTTTTTCCAGCTCAGGAAGCA 179
                      ** *      *   *   *  *   ***   * * ***     *  ** **  *     *

consensus_7682#0      AGAATAAATCCCTGAAG-CAGGCTCTGAGCTTTGTCAGCCTGCTCAGGAGTACCAGATAT 412
consensus_7682#2      AGAATAAATCCCTGAAG-CAGGCTCTGAGCTTTGTCAGCCTGCTCAGGAGTACCAGATAT 204
consensus_7682#1      TTGCTGCACCTCCAAACTCATATTGTAGACCTTGGT--CCTGATAAAGACAAC--ATTAT 235
                          *  * * *  **  **   * *   * ***    **** * * **  **    ***

consensus_7682#0      TCGAACAACTTTTTCTATGGCGTCAGGCCT--TTCGTCAGCAAGTGTGACAGTGGCACCA 470
consensus_7682#2      TCGAACAACTTTTTCTATGGCGTCAGGCCT--TTCGTCAGCAAGTGTGACAGTGGCACCA 262
consensus_7682#1      TACAACAAGGTTACTTGTCCCTTCAAGTGAAATTGCTTGCTTCGAGGGAAGGGATGGATC 295
                      *  *****  **   * *  * *** *     **  *      * * **  *        

consensus_7682#0      GACATCTCGCTTATTTGAGCAAGCTTGCTTCCA-GCTCTCATAGTAAGGCTTGCAACAGC 529
consensus_7682#2      GACATCTCGCTTATTTGAGCAAGCTTGCTTCCA-GCTCTCATAGTAAGGCTTGCAACAGC 321
consensus_7682#1      ATTATCTGATATACAGAGACAGACCAGTGCAAATGTACAGATATTACCAAGGCAAGCTCT 355
                         ****    **      **  *  *     * *  *  *** **        * *   

consensus_7682#0      ACTCTTTGGTATGACAACTTCTAATGTGCTTCTTGTCACTAGAGGA-ACAGCAAATCGTT 588
consensus_7682#2      ACTCTTTGGTATGACAACTTCTAATGTGCTTCTTGTCACTAGAGGA-ACAGCAAATCGTT 380
consensus_7682#1      TCCATCTTGTGCTCTAGAGTCTGATGAGCTTATACAGATTGTAGGAGAGATTAGAGCTGC 415
                       *  * * **     *   *** *** **** *    * *  **** * *  * * *   

consensus_7682#0      TTGCAGCACTTTGCCTCATATCATCATTAATGTTGCTCCCTTGCTCAAACGACATATTTG 648
consensus_7682#2      TTGCAGCACTTTGCCTCATATCATCATTAATGTTGCTCCCTTGCTCAAACGACATATTTG 440
consensus_7682#1      ACGGGATGCTCTTGTGCAAATAACTGCAAA-ATTACGGAGTTACTTCTACCGCGAGATTC 474
                        *     ** *    ** ** *     **  ** *    ** **   **  *    ** 

consensus_7682#0      CACCACCTCCACTATCCTTCCATGAAGCTGGAACATGCTGTGCTTGTTGGTAGGATGGCA 708
consensus_7682#2      CACCACCTCCACTATCCTTCCATGAAGCTGGAACATNCTGTGCTTGTTGCC-------CC 493
consensus_7682#1      CTGGTCCTAACCAACTTGGCAATATTACTGTTCATGGCTCCATTTCTCCAGCAAAAGGTT 534
                      *    ***   * *     * **    ***       **    ** *             

consensus_7682#0      TTGGAATATCACTTCCCTGGTATGGTCCTCTAGGTGA 745
consensus_7682#2      TTGTCTCGTCTC------------------------- 505
consensus_7682#1      CACCTAGAGGACCATACCAGGGAAGTGATA------- 564
                                 *