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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7731#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1418 fasta sequence
[AAATGCTTGTCTTGTTAAAACTTTTGAACATGCCTGTGGATAATTTGTAATTCTGTTAAAATGCATGAAGAATAAAGATGTGAGGCAGGGAGAAAATGTGTGCTGAAGGCATTTAAGATGTCTATTGAGTTTTGATGGAACACTCTGATCTGTGAATCTCTTTCCCTAGGAAGGTTTTGGAACATCAGATACATATTGCGCATATCTTATTATCTTATCTGCAGATGTATAATGTATTTCAGCTGAAGCATTTCATTTACCATACTTTAACTTATCTAGGATTCTAGGATACTATGATATAAAATTTTGGTTAGTGCGAACTTGTCTTCTGCTTATGTCAGCATTATAGGCCTATAGGATTCTATACTTGGCACTTCGGCAATATCCATATACTCTGCATCCTTATATGCTGTCAGTAGACATTGCCATAACAACCCCTCTTTAGCCCGGCAGATAACAAATTCTCTTTACTGTGTGCTCCTTTAGGTTGGGATATATCTGCCCTCATACGATCTATTGCGCAATTGGATTGAAGAATATTCAGATCATAGTTTTCCTAAACTGAGACCATATGCTCCTCTTATTGCTGGCTCTGTTGCCCGATCATTGGCATGCATAACTTGTTCCCCTATTGAGTTGGCAAGAACACGGATGCAGTTCGGTCATACCACCTTCTATGGACTGGTCTTGGAGCACAACTTGCACGTGACGTCCCCTTCTCAGCTATATGCTGGACAGTTCTTGAACCAACTAGAAGGCATCTGATAAGAATAGTTGGCGAGCAAAGCAATGCAGCTGTTATATTGGGGGCAAACTTCTCCGCAGGCTTCATTGCTGGAGTTATCTCTGCTGGTGCTACCTGTCCTCTCGATGTTGCCAAGACACGCAGACAAATAGAGAAGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAAGTATGGAGTAAGGAAGGCATCAGCGGGATATTCAGAGGTGCAGGTCCTCGAATGGCACGGGCAGGGCCTTCAGTGGGCATCGTCGTCTCGTCATATGAAGTTGTGAAGCACATCATGCACCGGAAACACGCAGAGTTATGACCTGATTTTAACTCTTCAAACGTAGAATTCAACTGCAGCTGAGGCTTTTAACCATTATTTTTTCTAGTTTACCCTACACGGACTAGATCGCTTTAGTGAAAGCCGGTTTTTATTCTCTATCTATATGCCTTGCCTACCTTATCAGGAAGGTGAGGCCGAGTGTGTCCCTTCTAATAAAAGGGCAGAATGCCCTAGATGTGAACATTCCTTGTTACAAGAATTCATTGATCCATTCTCCCTGTCTGCTAAAAGTGAGTTTGGGTTGAAAGATAAAAAAAATAATGAACACGAACTCTCCAAGCAGACTAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK064461 [AAATGCTTGTCTTGTTAAAACTTTTGAACATGCCTGTGGATAATTTGTAATTCTGTTAAAATGCATGAAGAATAAAGATGTGAGGCAGGGAGAAAATGTGTGCTGAAGGCATTTAAGATGTCTATTGAGTTTTGATGGAACACTCTGATCTGTGAATCTCTTTCCCTAGGAAGGTTTTGGAACATCAGATACATATTGCGCATATCTTATTATCTTATCTGCAGATGTATAATGTATTTCAGCTGAAGCATTTCATTTACCATACTTTAACTTATCTAGGATTCTAGGATACTATGATATAAAATTTTGGTTAGTGCGAACTTGTCTTCTGCTTATGTCAGCATTATAGGCCTATAGGATTCTATACTTGGCACTTCGGCAATATCCATATACTCTGCATCCTTATATGCTGTCAGTAGACATTGCCATAACAACCCCTCTTTAGCCCGGCAGATAACAAATTCTCTTTACTGTGTGCTCCTTTAGGTTGGGATATATCTGCCCTCATACGATCTATTGCGCAATTGGATTGAAGAATATTCAGATCATAGTTTTCCTAAACTGAGACCATATGCTCCTCTTATTGCTGGCTCTGTTGCCCGATCATTGGCATGCATAACTTGTTCCCCTATTGAGTTGGCAAGAACACGGATGCAGTTCGGTCATACCACCTTCTATGGACTGGTCTTGGAGCACAACTTGCACGTGACGTCCCCTTCTCAGCTATATGCTGGACAGTTCTTGAACCAACTAGAAGGCATCTGATAAGAATAGTTGGCGAGCAAAGCAATGCAGCTGTTATATTGGGGGCAAACTTCTCCGCAGGCTTCATTGCTGGAGTTATCTCTGCTGGTGCTACCTGTCCTCTCGATGTTGCCAAGACACGCAGACAAATAGAGAAGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAAGTATGGAGTAAGGAAGGCATCAGCGGGATATTCAGAGGTGCAGGTCCTCGAATGGCACGGGCAGGGCCTTCAGTGGGCATCGTCGTCTCGTCATATGAAGTTGTGAAGCACATCATGCACCGGAAACACGCAGAGTTATGACCTGATTTTAACTCTTCAAACGTAGAATTCAACTGCAGCTGAGGCTTTTAACCATTATTTTTTCTAGTTTACCCTACACGGACTAGATCGCTTTAGTGAAAGCCGGTTTTTATTCTCTATCTATATGCCTTGCCTACCTTATCAGGAAGGTGAGGCCGAGTGTGTCCCTTCTAATAAAAGGGCAGAATGCCCTAGATGTGAACATTCCTTGTTACAAGAATTCATTGATCCATTCTCCCTGTCTGCTAAAAGTGAGTTTGGGTTGAAAGATAAAAAAAAT ]
[-] EMBL CF325430 [ GACACGCAGACAAATAGAGAAGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAAGTATGGAGTAAGGAAGGCATCAGCGGGATATTCAGAGGTGCAGGTCCTCGAATGGCACGGGCAGGGCCTTCAGTGGGCATCGTCGTCTCGTCATATGAAGTTGTGAAGCACATCATGCACCGGAAACACGCAGAGTTATGACCTGATTTTAACTCTTCAAACGTAGAATTCAACTGCAGCTGAGGCTTTTAACCATTATTTTTTCTAGTTTACCCTACACGGACTAGATCGCTTTAGTGAAAGCCGGTTTTTATTCTCTATCTATATGCCTTGCCTACCTTATCAGGAAGGTGAGGCCGAGTGTGTCCCTTCTAATAAAAGGGCAGAATGCCCTAGATGTGAACATTCCTTGTTACAAGAATTCATTGATCCATTCTCCCTGTCTGCTAAAAGTGAGTTTGGGTTGAAAGATAAAAAAAATAATGAACACGAACTCTCCAAGCAGACTAAAAAAAAAAAAAAAAAAAA]
[-] EMBL C74480 [ CACAAGGCGCAT TTGCATGAAGTATGGAGTAAGGAAGGCATCAGCGGNATATTCAGAGGTGCAGGTCCTCGANTGGCACGGGCAGGGCCTTCAGTGGGCATCGTCGTCTCGTCATATGAAGTTGTNAAGCACATCATGCACCGGAAACACGCAGAGTTATGACCTGATTTTAACTCTTCAAACGTAGAATTCAACTGCAGCTGAGGCTTTTAACCATTATTTTTTCTAGTTTACCCTACACGGACTAGATCGCTTTAGTGAAAGCCGGTTTTTATTCTCTATCTATATGCCTTGCCTACCTTATCAGGAAGGTGAGGCCGAGTGTGTCCCTTCTAATAAAAGGGCAGAATGCCCTAGATGTGAACATTCCTTGTTACAAGAATTCATTGATC ]
consensusID : consensus_7731#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1189 fasta sequence
[CTCGTCAACCCGCTCGACGTCGCCAAGACAAGGTTACAAGCACANGCGGCCGGAGTTGTCTATAATCCGATATGGTCAGATTTTAGGTGCTATCCGTGGTGCAACCCTGGAATGAATGGTTTAGGGCCATCATGCAGTTCTGAATGCTTCCAATACAGAGGGACAATGGATGTGTTTTATAAGGTCACTAAACAGGAAGGAGTTTTTAGACTATGGAGAGGTACTGCTGCAACCTAGCATTGGCAGTGCCAACGGTTGGGATATATCTGCCCTCATACGATCTATTGCGCAATTGGATTGAAGAATATTCAGATCATAGTTTTCCTAAACTGAGACCATATGCTCCTCTTATTGCTGGCTCTGTTGCCCGATCATTGGCATGCATAACTTGTTCCCCTATTGAGTTGGCAAGAACACGGATGCAGGCCTTTAAAGTATCAAATGTTGGAGGAAAACCCCCTGGAATGTGGAAGAC-TTTGCTTGGTGTGCTTGCATTGAGACAGAGCATCAATCATCCTGAAAATATTCGGTCATACCACCTTCTATGGACTGGTCTTGGAGCACAACTTGCACGTGACGTCCCCTTCTCAGCTATATGCTGGACAGTTCTTGAACCAACTAGAAGGCATCTGATAAGAATAGTTGGCGAGCAAAGCAATGCAGCTGTTATATTGGGGGCAAACTTCTCCGCAGGCTTCATTGCTGGAGTTATCTCTGCTGGTGCTACCTGTCCTCTCGATGTTGCCAAGACACGCAGACAAATAGAGAAGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAAGTATGGAGTAAGGAAGGCATCAGCGGGATATTCAGAGGTGCAGGTCCTCGAATGGCACGGGCAGGGCCTTCAGTGGGCATCGTCGTCTCGTCATATGAAGTTGTGAAGCACATCATGCACCGGAAACACGCAGAGTTATGACCTGATTTTAACTCTTCAAACGTAGAATTCAACTGCAGCTGAGGCTTTTAACCATTATTTTTTCTAGTTTACCCTACACGGACTAGATCGCTTTAGTGAAAGCCGGTTTTTATTCTCTATCTATAGGCCTTGCCTACCTTATCAGGAAGGTGAGGCCGAGTGTGTCCCTTCTAATAAAAGGGCAGAATGCCCTAGAAGGGAACATTCCTTGTTACAAGAATTCATTGATC]
[-] EMBL AU083484 [CTCGTCAACCCGCTCGACGTCGCCAAGACAAGGTTACAAGCACANGCGGCCGGAGTTGTCTATAATCCGATATGGTCAGATTTTAGGTGCTATCCGTGGTGCAACCCTGGAATGAATGGTTTAGGGCCATCATGCAGTTCTGAATGCTTCCAATACAGAGGGACAATGGATGTGTTTTATAAGGTCACTAAACAGGAAGGAGTTTTTAGACTATGGAGAGGTACTGCTGCAACCTAGCATTGGCAGTGCCAACGGTTGGGATATATCTGCCCTCATACGATCTATTGCGCAATTGGATTGAAGAATATTCAGATCATAGTTTTCCTAAACTGAGACCATATGCTCCTCTTATTGCTGGCTCTGTTGCCCGATCATTGGCATGCATAACTTGTTCCCCTATTGAGTTGGCAAGAACACGGATGCAGGCCTTTAAAGTATCAAATGTTGGAGGAAAACCCCCTGGAATGTGGAAGAC TTTGCTTGGTGTGCTTGCATTGAGACAGAGCATCAATCATCCTGAAAATATTCGGTCATACCA ]
[-] EMBL CB651728 [ AATGTGGAAGACTTTTGCTTGGTGTGCTTGCATTGAGACAGAGCATCAATCATCCTGAAAATATTCGGTCATACCACCTTCTATGGACTGGTCTTGGAGCACAACTTGCACGTGACGTCCCCTTCTCAGCTATATGCTGGACAGTTCTTGAACCAACTAGAAGGCATCTGATAAGAATAGTTGGCGAGCAAAGCAATGCAGCTGTTATATTGGGGGCAAACTTCTCCGCAGGCTTCATTGCTGGAGTTATCTCTGCTGGTGCTACCTGTCCTCTCGATGTTGCCAAGACACGCAGACAAATAGAGAAGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAAGTATGGAGTAAGGAAGGCATCAGCGGGATATTCAGAGGTGCAGGTCCTCGAATGGCACGGGCAGGGCCTTCAGTGGGCATCGTCGTCTCGTCATATGAAGTTGTGAAGCACATCATGCACCGGAAACACGCAGAGTTATGACCTGATTTTAACTCTTCAAACGTAGAATTCAACTGCAGCTGAGGCTTTTAACCATTATTTTTTCTAGTTTACCCTACACGGACTAGATCGCTTTAGTGAAAGCCGGTTTTTATTCTCTATCTATAGGCCTTGCCTACCTTATCAGGAAGGTGAGGCCGAGTGTGTCCCTTCTAATAAAAGGGCAGAATGCCCTAGAAGGGAACATTCCTTGTTACAAGAATTCATTGATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7731#0 AAATGCTTGTCTTGTTAAAACTTTTGAACATGCCTGTGGATAATTTGTAATTCTGTTAAA 60
consensus_7731#1 ---------------------------------------------------CTCGTCAAC 9
** **
consensus_7731#0 ATGCATGAAGAATAAAGATGTGAGGCAGGGAGAAAATGTGTGCTGAAGGCATTTAAGATG 120
consensus_7731#1 CCGCTCGACGT-CGCCAAGACAAGGTTACAAGCACANGCG-GCCGGAGTTGTCTATAAT- 66
** ** * * *** ** * * * * ** * ** * ** **
consensus_7731#0 TCTATTGAGTTTTGATGGAACACTCTGATCTGTGAATCTCTTTCCCTAGGAAGGTTTTGG 180
consensus_7731#1 -CCGATATGGTCAGATTTTAGGTGCT-ATCCGTGGTGCAACCCTGGAATGAATGGTTTAG 124
* * * * *** * ** *** *** * * *** * *** *
consensus_7731#0 AACATCAGATACATATTGCGCATATCTTATTATCTTATCTGCAGATGTATAATGTATTTC 240
consensus_7731#1 GGC----------CATCATGCAGTTCTGAATGCTTCCAATACAGAGGGACAATGGAT--- 171
* ** *** *** * * * * **** * * **** **
consensus_7731#0 AGCTGAAGCATTTCATTTACCATACTTTAACTTATCTAGGATTCTAGGATACTATGATAT 300
consensus_7731#1 -------GTGTTTTAT--AAGGTCACTAAACAGGAAGGAGTTTTTAGACTATGGAGAGGT 222
* *** ** * * * *** * ** *** ** ** *
consensus_7731#0 AAAATTTTGGTTAGTGCGAACTTGTCTTCTGCTTATGTCAGCATTATAGGCCTATAGGAT 360
consensus_7731#1 A---------CTGCTGCAACCTAGCAT--TGGCAGTGCCAACGGT---------TGGGAT 262
* * *** * ** * * ** ** ** * * * ****
consensus_7731#0 TCTATACTTGGCACTTCGGCAATATCCATATACTCTGCATCCTTATATGCTGTCAGTAGA 420
consensus_7731#1 ---ATATCTGCC------------CTCATACGATCTATTGCGCAATTGG--ATTGAAGAA 305
*** ** * **** *** * ** * * *
consensus_7731#0 CATTGCCATAACAACCCCTCTTTAGCCCGGCAGATAACAAATTCTCTTTACTGTGTGCTC 480
consensus_7731#1 TATT--CAGATCATAGTTTTCCTAAACTG--AGACCATATGCTCCTCTTATTGCTGGCTC 361
*** ** * ** * ** * * *** * * ** *** ** ****
consensus_7731#0 CTTTAGGTTGGGATATATCTGCCCTCATACGATCTATTGCGCAATTGGATTGAAGAATAT 540
consensus_7731#1 TGTTGCCC---GAT-CATTGGCATGCATA--ACTTGTTCCCCTATTGAGTTGGCAAGAAC 415
** *** ** ** **** * * ** * * **** *** * *
consensus_7731#0 TCAGATCATAGTTTTCCTAAACTGAGACCATATGCTCCTCTTATTGCTGGCTCTGTTGCC 600
consensus_7731#1 ACGGATGCAGGCCTT--TAAAGT---ATCAAATG-TTGGAGGAAAACCCCCTGGAATGTG 469
* *** * ** **** * * ** *** * * * ** **
consensus_7731#0 CGATCATTGGCATGCATAACTTGTTCCCCTATTGAGTTGGCAAGAACACGGATGCAGTTC 660
consensus_7731#1 GAAGACTTTGCTTGGTGTGCTTGCATTGAGACAGAGC-ATCAATCATCCTGAAAATATTC 528
* ** ** ** **** * *** *** * * ** ***
consensus_7731#0 GGTCATACCACCTTCTATGGACTGGTCTTGGAGCACAACTTGCACGTGACGTCCCCTTCT 720
consensus_7731#1 GGTCATACCACCTTCTATGGACTGGTCTTGGAGCACAACTTGCACGTGACGTCCCCTTCT 588
************************************************************
consensus_7731#0 CAGCTATATGCTGGACAGTTCTTGAACCAACTAGAAGGCATCTGATAAGAATAGTTGGCG 780
consensus_7731#1 CAGCTATATGCTGGACAGTTCTTGAACCAACTAGAAGGCATCTGATAAGAATAGTTGGCG 648
************************************************************
consensus_7731#0 AGCAAAGCAATGCAGCTGTTATATTGGGGGCAAACTTCTCCGCAGGCTTCATTGCTGGAG 840
consensus_7731#1 AGCAAAGCAATGCAGCTGTTATATTGGGGGCAAACTTCTCCGCAGGCTTCATTGCTGGAG 708
************************************************************
consensus_7731#0 TTATCTCTGCTGGTGCTACCTGTCCTCTCGATGTTGCCAAGACACGCAGACAAATAGAGA 900
consensus_7731#1 TTATCTCTGCTGGTGCTACCTGTCCTCTCGATGTTGCCAAGACACGCAGACAAATAGAGA 768
************************************************************
consensus_7731#0 AGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAAGTATGGAGTA 960
consensus_7731#1 AGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAAGTATGGAGTA 828
************************************************************
consensus_7731#0 AGGAAGGCATCAGCGGGATATTCAGAGGTGCAGGTCCTCGAATGGCACGGGCAGGGCCTT 1020
consensus_7731#1 AGGAAGGCATCAGCGGGATATTCAGAGGTGCAGGTCCTCGAATGGCACGGGCAGGGCCTT 888
************************************************************
consensus_7731#0 CAGTGGGCATCGTCGTCTCGTCATATGAAGTTGTGAAGCACATCATGCACCGGAAACACG 1080
consensus_7731#1 CAGTGGGCATCGTCGTCTCGTCATATGAAGTTGTGAAGCACATCATGCACCGGAAACACG 948
************************************************************
consensus_7731#0 CAGAGTTATGACCTGATTTTAACTCTTCAAACGTAGAATTCAACTGCAGCTGAGGCTTTT 1140
consensus_7731#1 CAGAGTTATGACCTGATTTTAACTCTTCAAACGTAGAATTCAACTGCAGCTGAGGCTTTT 1008
************************************************************
consensus_7731#0 AACCATTATTTTTTCTAGTTTACCCTACACGGACTAGATCGCTTTAGTGAAAGCCGGTTT 1200
consensus_7731#1 AACCATTATTTTTTCTAGTTTACCCTACACGGACTAGATCGCTTTAGTGAAAGCCGGTTT 1068
************************************************************
consensus_7731#0 TTATTCTCTATCTATATGCCTTGCCTACCTTATCAGGAAGGTGAGGCCGAGTGTGTCCCT 1260
consensus_7731#1 TTATTCTCTATCTATAGGCCTTGCCTACCTTATCAGGAAGGTGAGGCCGAGTGTGTCCCT 1128
**************** *******************************************
consensus_7731#0 TCTAATAAAAGGGCAGAATGCCCTAGATGTGAACATTCCTTGTTACAAGAATTCATTGAT 1320
consensus_7731#1 TCTAATAAAAGGGCAGAATGCCCTAGAAGGGAACATTCCTTGTTACAAGAATTCATTGAT 1188
*************************** * ******************************
consensus_7731#0 CCATTCTCCCTGTCTGCTAAAAGTGAGTTTGGGTTGAAAGATAAAAAAAATAATGAACAC 1380
consensus_7731#1 C----------------------------------------------------------- 1189
*
consensus_7731#0 GAACTCTCCAAGCAGACTAAAAAAAAAAAAAAAAAAAA 1418
consensus_7731#1 --------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||