cluster # 7761

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Oryza sativa
cluster # 7761 cluster # 7761 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7761#0 length = 687 sequences # 1

consensus_7761#1 length = 483 sequences # 4

consensusID : consensus_7761#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 687
fasta sequence

                              [CATATACGGTATATTACTCGAGCAACATATATTCAACACAAGATTTTTATAACGAACTTTAGCACGCAAAAGCACAAATCAACTCCGAGGTACATGTAAATGTAATGTCACTCACTCAAGCACAGGAATTAATTAACTCAACATCGGTCATCAAAGTATTAAGCATGCGCTACACGATCACACACGACACCGAAAGCAATTAACAACAAATCAAATAAGCGAACAATAACAATAGCTGCATGAGCTGCTCATCAAGCACTAATTTAATTCAGATATAATCAAATTAGCTAGCTTAATTAGCTAGTTGCTGGAGCCCTGGAAACCATTGGGGGGAGTTCCCCGGTGATAGGGNTTNAAAANAANCCTNAATTTGANTNTTNNGGGNTCCNACCCATATNNANGTCCNACCTTTTTNNGGNNCTNTCTCCCTTTTATAAGNTCTTNNNTCNGTTTCCTTNNTTCGCNTTNTCCTTTCTNTNTTCTTTTTTNTTTTCCCTTTNTTCTCNCTTCCCTTCTCTNTTCTTNTNNTTCTTCCTCTCTCTCTTCCCTTTCCNTCTTCNTTNNTCCTTTTTCTTTCTCTCTCNNTTTTCNCTCTNTTTCCTCTCTTTTNTNTTNTTCNTCTTCNCTCTTCCNCCNTCCCNNTCTTTCTTCCTCCCCNTTTCTNTTNCCTTCTTCTCTTCTCTCTTN]

[+] EMBL BE229241             [CATATACGGTATATTACTCGAGCAACATATATTCAACACAAGATTTTTATAACGAACTTTAGCACGCAAAAGCACAAATCAACTCCGAGGTACATGTAAATGTAATGTCACTCACTCAAGCACAGGAATTAATTAACTCAACATCGGTCATCAAAGTATTAAGCATGCGCTACACGATCACACACGACACCGAAAGCAATTAACAACAAATCAAATAAGCGAACAATAACAATAGCTGCATGAGCTGCTCATCAAGCACTAATTTAATTCAGATATAATCAAATTAGCTAGCTTAATTAGCTAGTTGCTGGAGCCCTGGAAACCATTGGGGGGAGTTCCCCGGTGATAGGGNTTNAAAANAANCCTNAATTTGANTNTTNNGGGNTCCNACCCATATNNANGTCCNACCTTTTTNNGGNNCTNTCTCCCTTTTATAAGNTCTTNNNTCNGTTTCCTTNNTTCGCNTTNTCCTTTCTNTNTTCTTTTTTNTTTTCCCTTTNTTCTCNCTTCCCTTCTCTNTTCTTNTNNTTCTTCCTCTCTCTCTTCCCTTTCCNTCTTCNTTNNTCCTTTTTCTTTCTCTCTCNNTTTTCNCTCTNTTTCCTCTCTTTTNTNTTNTTCNTCTTCNCTCTTCCNCCNTCCCNNTCTTTCTTCCTCCCCNTTTCTNTTNCCTTCTTCTCTTCTCTCTTN]




>consensus_7761#0
CATATACGGTATATTACTCGAGCAACATATATTCAACACAAGATTTTTATAACGAACTTT
AGCACGCAAAAGCACAAATCAACTCCGAGGTACATGTAAATGTAATGTCACTCACTCAAG
CACAGGAATTAATTAACTCAACATCGGTCATCAAAGTATTAAGCATGCGCTACACGATCA
CACACGACACCGAAAGCAATTAACAACAAATCAAATAAGCGAACAATAACAATAGCTGCA
TGAGCTGCTCATCAAGCACTAATTTAATTCAGATATAATCAAATTAGCTAGCTTAATTAG
CTAGTTGCTGGAGCCCTGGAAACCATTGGGGGGAGTTCCCCGGTGATAGGGNTTNAAAAN
AANCCTNAATTTGANTNTTNNGGGNTCCNACCCATATNNANGTCCNACCTTTTTNNGGNN
CTNTCTCCCTTTTATAAGNTCTTNNNTCNGTTTCCTTNNTTCGCNTTNTCCTTTCTNTNT
TCTTTTTTNTTTTCCCTTTNTTCTCNCTTCCCTTCTCTNTTCTTNTNNTTCTTCCTCTCT
CTCTTCCCTTTCCNTCTTCNTTNNTCCTTTTTCTTTCTCTCTCNNTTTTCNCTCTNTTTC
CTCTCTTTTNTNTTNTTCNTCTTCNCTCTTCCNCCNTCCCNNTCTTTCTTCCTCCCCNTT
TCTNTTNCCTTCTTCTCTTCTCTCTTN

consensusID : consensus_7761#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 483
fasta sequence

                              [AAGATTTTTATCACGAACTTTAGCACGCAAAAGCACAAATCAACTCCGAGGTACATGTA-GATGTAATGTCACTCACTCAAGCACAGGAATTAATTAACTCAACATCGGTCATCAAAGTAGTAAGCATGCGCTACACGATCACACACGACACCGAAAGCAATTAACAACAAATCAAATAAGCGAACAATAACAATAGCTGCATGAGCTGCTCATCAAGCACTAATTAATTCAGATATAATCAAATTAGCTAGCTTAATTAGCTAGTTGCTGGAGCACTGGAAGCCATTGGGGAGCTTCCTGCTGCAGCGGTTGACGAGGACGCTGAGCTGGACGTGCGGCTCGACGCCGACGAGGCCGAGCACGTTGGCGCGCAGCGCCGTGCAGAGGCACACGGCGGCGTCCACGTCGGCGAGGCCGGCGAGGAGCCCGCAGCACTGCTCGCCGGAGGACGACGGCGACGAGTTCCCCAGCAGATGGCCCAGG]

[+] EMBL CB684862             [AAGATTTTTATCACGAACTTTAGCACGCAAAAGCACAAATCAACTCCGAGGTACATGTA GATGTAATGTCACTCACTCAAGCACAGGAATTAATTAACTCAACATCGGTCATCAAAGTAGTAAGCATGCGCTACACGATCACACACGACACCGAAAGCAATTAACAACAAATCAAATAAGCGAACAATAACAATAGCTGCATGAGCTGCTCATCAAGCACTAATTAATTCAGATATAATCAAATTAGCTAGCTTAATTAGCTAGTTGCTGGAGCACTGGAAGCCATTGGGGAGCTTCCTGCTGCAGCGGTTGACGAGGACGCTGAGCTGGACGTGCGGCTCGACGCCGACGAGGCCGAGCACGTTGGCGCGCAGCGCCGTGCAAAGGCACACGGCGGCGTCCACGTCGGCGAGGCCGGCGAGGAGCCCGCAGCACTGCTCGCCGGAGGACGACGGCGACGAGTTCCCCAGCAGATGGCCCAG ]
[+] EMBL BI306181             [AAGATTTTTATAACGAACTTTAGCACGCAAAAGCACAAATCAACTCCGAGGTACATGTA GATGTAATGTCACTCACTCAAGCACAGGAATTAATTAACTCAACATCGGTCATCAAAGTAGTAAGCATGCGCTACACGATCACACACGACACCGAAAGCAATTAACAACAAATCAAATAAGCGAACAATAACAATAGCTGCATGAGCTGCTCATCAAGCACTAATTAATTCAGATATAATCAAATTAGCTAGCTTAATTAGCTAGTTGCTGGAGCACTGGAAGCCATTGGGGAGCTTCCTGCTGCAGCGGTTGACGAGGACGCTGAGCTGGACGTGCGGCTCGACGCCGACGAGGCCGAGCACGTTGGCGCGCAGCGCCGTGCAGAGGCACACGGCGGCGTCCACGTCGGCGAGGCCGGCGAGGAGCCCGCAGCACTGCTCGCCGGAGGACGACGGCGACGAGTTCCCCAGCAGATGGCCCAG ]
[-] EMBL CB684861             [                                                AGGTACATGTAGGATGTAATGTCACTCACTCAAGCACAGGAATTAATTAACTCAACATCGGTCATCAAAGTAGTAAGCATGCGCTACACGATCACACACGACACCGAAAGCAATTAACAACAAATCAAATAAGCGAACAATAACAATAGCTGCATGAGCTGCTCATCAAGCACTAATTAATTCAGATATAATCAAATTAGCTAGCTTAATTAGCTAGTTGCTGGAGCACTGGAAGCCATTGGGGAGCTTCCTGCTGCAGCGGTTGACGAGGACGCTGAGCTGGACGTGCGGCTCGACGCCGACGAGGCCGAGCACGTTGGCGCGCAGCGCCGTGCAGAGGCACACGGCGGCGTCCACGTCGGCGAGGCCGGCGAGGAGCCCGCAGCACTGCTCGCCGGAGGACGACGGCGACGAGTTCCCCAGCAGATGGCCCAGG]
[-] EMBL AK107851             [                                                                           ACTCAAGCACAGGAATTAATTAACTCAACATCGGTCATCAAAGTAGTAAGCATGCGCTACACGATCACACACGACACCGAAAGCAATTAACAACAAATCAAATAAGCGAACAATAACAATAGCTGCATGAGCTGCTCATCAAGCACTAATTAATTCAGATATAATCAAATTAGCTAGCTTAATTAGCTAGTTGCTGGAGCACTGGAAGCCATTGGGGAGCTTCCTGCTGCAGCGGTTGACGAGGACGCTGAGCTGGACGTGCGGCTCGACGCCGACGAGGCCGAGCACGTTGGCGCGCAGCGCCGTGCAGAGGCACACGGCGGCGTCCACGTCGGCGAGGCCGGCGAGGAGCCCGCAGCACTGCTCGCCGGAGGACGACGGCGACGAGTTCCCCAGCAGATGGCCCAGG]




>consensus_7761#1
AAGATTTTTATCACGAACTTTAGCACGCAAAAGCACAAATCAACTCCGAGGTACATGTAG
ATGTAATGTCACTCACTCAAGCACAGGAATTAATTAACTCAACATCGGTCATCAAAGTAG
TAAGCATGCGCTACACGATCACACACGACACCGAAAGCAATTAACAACAAATCAAATAAG
CGAACAATAACAATAGCTGCATGAGCTGCTCATCAAGCACTAATTAATTCAGATATAATC
AAATTAGCTAGCTTAATTAGCTAGTTGCTGGAGCACTGGAAGCCATTGGGGAGCTTCCTG
CTGCAGCGGTTGACGAGGACGCTGAGCTGGACGTGCGGCTCGACGCCGACGAGGCCGAGC
ACGTTGGCGCGCAGCGCCGTGCAGAGGCACACGGCGGCGTCCACGTCGGCGAGGCCGGCG
AGGAGCCCGCAGCACTGCTCGCCGGAGGACGACGGCGACGAGTTCCCCAGCAGATGGCCC
AGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7761#0      CATATACGGTATATTACTCGAGCAACATATATTCAACACAAGATTTTTATAACGAACTTT 60
consensus_7761#1      ---------------------------------------AAGATTTTTATCACGAACTTT 21
                                                             *********** *********

consensus_7761#0      AGCACGCAAAAGCACAAATCAACTCCGAGGTACATGTAAATGTAATGTCACTCACTCAAG 120
consensus_7761#1      AGCACGCAAAAGCACAAATCAACTCCGAGGTACATGTAGATGTAATGTCACTCACTCAAG 81
                      ************************************** *********************

consensus_7761#0      CACAGGAATTAATTAACTCAACATCGGTCATCAAAGTATTAAGCATGCGCTACACGATCA 180
consensus_7761#1      CACAGGAATTAATTAACTCAACATCGGTCATCAAAGTAGTAAGCATGCGCTACACGATCA 141
                      ************************************** *********************

consensus_7761#0      CACACGACACCGAAAGCAATTAACAACAAATCAAATAAGCGAACAATAACAATAGCTGCA 240
consensus_7761#1      CACACGACACCGAAAGCAATTAACAACAAATCAAATAAGCGAACAATAACAATAGCTGCA 201
                      ************************************************************

consensus_7761#0      TGAGCTGCTCATCAAGCACTAATTTAATTCAGATATAATCAAATTAGCTAGCTTAATTAG 300
consensus_7761#1      TGAGCTGCTCATCAAGCACTAATT-AATTCAGATATAATCAAATTAGCTAGCTTAATTAG 260
                      ************************ ***********************************

consensus_7761#0      CTAGTTGCTGGAGCCCTGGAAACCATTGGGGGGAGTTCCCCGGTGATAGGGNTTNAAAAN 360
consensus_7761#1      CTAGTTGCTGGAGCACTGGAAGCCATTGGG--GAGCTTCCTGCTG-CAGCGGTTGACGAG 317
                      ************** ****** ********  *** * ** * **  ** * ** *  * 

consensus_7761#0      AANCCTNAATTTGANTNTTNNGGGNTCCNACCCATATNNANGTCCNACCTTTTTNNGGNN 420
consensus_7761#1      GACGCTGAGCTGGAC----GTGCGGCTCGACGCCGACGAGG--CCGAGCACGTTGGCGCG 371
                       *  ** *  * **       * *   * ** *  *       ** * *   **   *  

consensus_7761#0      CTNTCTCCCTTTTATAAGNTCTTNNNTCNGTTTCCTTNNTTCGCNTTNTCCTTTCTNTNT 480
consensus_7761#1      CAG----CGCCGTGCAGAGGCACACGGCGGCGTCC--ACGTCGGCGAGGCCGGCGAGGAG 425
                      *      *    *  *    *      * *  ***     ***      **         

consensus_7761#0      TCTTTTTTNTTTTCCCTTTNTTCTCNCTTCCCTTCTCTNTTCTTNTNNTTCTTCCTCTCT 540
consensus_7761#1      CCCGCAGCACTGCTCGCCGGAGGACGACGGCGACGAGTTCCCCAGCAGATGGCCCAGG-- 483
                       *        *   *         *     *      *   *       *   **     

consensus_7761#0      CTCTTCCCTTTCCNTCTTCNTTNNTCCTTTTTCTTTCTCTCTCNNTTTTCNCTCTNTTTC 600
consensus_7761#1      ------------------------------------------------------------
                                                                                  

consensus_7761#0      CTCTCTTTTNTNTTNTTCNTCTTCNCTCTTCCNCCNTCCCNNTCTTTCTTCCTCCCCNTT 660
consensus_7761#1      ------------------------------------------------------------
                                                                                  

consensus_7761#0      TCTNTTNCCTTCTTCTCTTCTCTCTTN 687
consensus_7761#1      ---------------------------