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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7777#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 590 fasta sequence
[ACNCTCCACAAAAAAATTCACAAATCGATACTCCTCTTCCTCGCTGCGCCACCACGCCGCCGTCGCCGGAGACCGGCCATAGCCGGCAACGTCCTCACCACCACCTGCTGCAAGCCCTCCCCCACAGCCTTCGGTTGCTGCTGCTTCAGTTTCCTCCAAGTGCGAGACGACCCGATCTGCATCCTCTACTGGTTCTTCG-TCTTCAACACTGCTGCTGCTCGTTCTGCTNCGATCTGTGGCTGCTGNTTCTGCCTCTACACCGGGGACGCCAAGCTACNGCTGGTGCTTCAAGCTCTACTTCCAGGACGCCGATCTGCANCCTTCTTCTTCACTGCTGCCTAAAAATCTTCATCCTACTTCCAGTGCTTCAACAACAGTTTCATCACTTGGGTTTATTCTTTCCTATCCTCACTTCTTANATAAAAACTTGNGCNTTATTTNAGAGATTTGATCACTGACGATTGTGAATTTACTTTCCTGCACTTCTAATACNGGNACATAGTGGTNTTTTGNCCAGATTANNTGCTATGATGATAAATTGCTGCANTCTGAGTTACCTAGNTGGCTACGGGNACTATAATTTNGTAGAT]
[+] EMBL CA765636 [ACNCTCCACAAAAAAATT ACAAATCGATACTCCTCTTCCTCGCTGCGCCACCACGCCGCCGNCGNCGGAGACCGNCCATAGCCGGCAACGNCCTCACCACCACCTGCTGCAAGCCCTCCCCCACAGCCTTCGGTTGCTGCTGCTTCAGNTTCCTCCAAGTGCGANACGACCCGATCTGCATCCTCTACTGGTTCTTCGCTCNTCAACACTGCTGCTGCTCGTTCTGCTNCGATCTGTGGCTGCTGNTTCTGCCTCTACACCGGGGACGCCAAGCTACNGCTGGTGCTTCAAGCTCTACTTCCAGGACGCCGATCTGCANCCTTCTTCTTCACTGCTGCCTAAAAATCTTCATCCTACTTCCAGTGCTTCAACAACAGTTTCATCACTTGGGTTTATTCTTTCCTATCCTCACTTCTTANATAAAAACTTGNGCNTTATTTNAGAGATTTGATCACTGACGATTGTGAATTTACTTTCCTGCACTTCTAATACNGGNACATAGTGGTNTTTTGNCCAGATTANNTGCTATGATGATAAATTGCTGCANTCTGAGTTACCTAGNTGGCTACGGGNACTATAATTTNGTAGAT]
[+] EMBL AK058208 [ aCTCCACAAAAAAATTCACAAATCGATACTCCTCTTCCTCGCTGCGCCACCACGCCGCCGTCGCCGGAGACCGGCCATAGCCGGCGACGTCCTCACCACCACCAGCTGCAAGCCCTCCCCCACAGCCTTCGGTTGCTGCTGCTTCAGTTTCCTCCAAGTGCGAGACGACCCGATCTGCATCCTCTACTGGTTCTTCG TCTTCAACACTGCTGCTGCTCGTTCTGCTTCGATCTGTGGCTGCTGCTTCTGCCTCTACACCAGGGACGCCAAGCTACTGCTGGTGCTTCAAGCTCTACTTCCAGGACGCCGATCTGCAACCTTCTTCTTCACTGCTGCCTAAAAATCTTCATCCTACTTCCAGTGCTTCGACAACAGTTTCATCACTTGGGTTTATTCTTTCCTATCCTCA GTTAGATAAAAACTTGTGCTTTATTTCAGAGATTTGATCACTG TGATTGTAAATTTACTTTCCTGCACTTCTAATACTGGAACATAGTGtt ]
[+] EMBL CA753221 [ AAATTCACAAATCGATACTCCTCTTCCTCGCTGCGCCACCACGCCGCCGTCGCCGGAGACCGGCCATAGCCGGCAACGTCCTCACCACCACCTGCTGCAAGCCCTCCCCCACAGCCTTCGGTTGCTGCTGCTTCAGTTTCCTCCAAGTGCGAGACGACCCGATCTGCATCCTCTACTGGTTCTTCG TCTTCAA ]
consensusID : consensus_7777#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 460 fasta sequence
[ATCCTCTACTG-GTTCTTCGTCTTCAACACTGCTGCTGCTCGTTCTGCTTCGATCTGTGGCTGCTGCTTCTGCCTCTACACCAGGGACGCCAAGCTACTGCTGGTGCTTCAAGCTCTACTTCCAGGACGCCGATCTGCAACCTTCTTCTTCACTGCTGCCTAAAAATCTTCATCCTACTTCCAGTGCTTCGACAACAGTTTCATCACTTGGGTTTATTCTTTCCTATCCTCAGTTAGATAAAAACTTGTGCTTTATTTCAGAGATTTGATCACTGTGATTGTAAATTTACTTTCCTGCACTTCTAATACTGGAACATAGTGTTTTTTTTGTCCAGATTAGCTTCTCTGTTGTTAAATTGCTGAAATCTGAGTTACCTAGGTCTGAGTCTGTGTTTTATTTTGCAGTAGAAGCTTTATTTTGTTCTAAATTTAAATGCCCTATTGTTGCCTTTTAAAAAAAA]
[+] EMBL CB000757 [ATCCTCTACTG GTTCTTCGTCTTCAACACTGCTGCTGCTCGTTCTGCTTCGATCTGTGGCTGCTGCTTCTGCCTCTACACCAGGGACGCCAAGCTACTGCTGGTGCTTCAAGCTCTACTTCCAGGACGCCGATCTGCAACCTTCTTCTTCACTGCTGCCTAAAAATCTTCATCCTACTTCCAGTGCTTCGACAACAGTTTCATCACTTGGGTTTATTCTTTCCTATCCTCAGTTAGATAAAAACTTGTGCTTTATTTCAGAGATTTGATCACTGTGATTGTAAATTTACTTTCCTGCACTTCTAATACTGGAACATAGTGTTTTTTTTGTCCAGATTAGCTTCTCTGTTGTTAAATTGCTGAAATCTGAGTTACCTAGGTCTGAGTCTGTGTTTTATTTTGCAGTAGAAGCTTTATTTTGTTCTAAATTTAAATGCCCTATTGTTGCCTTTTAAAAAAAA]
[+] EMBL CB001044 [ATCCTCTACTGAGGTCTTCGTCTTCAACACTGCTGCTGCTCGTTCTGCTTCGATCTGTGGCTGCTGCTTCTGCCTCTACACCAGGGACGCCAAGCTACTGCTGGTGCTTCAAGCTCTACTTCCAGGACGCCGATCTGCAACCTTCTTCTTCACTGCTGCCTAAAAATCTTCATCCTACTTCCAGTGCTTCGACAACAGTTTCATCACTTGGGTTTATTCTTTCCTATCCTCAGTTAGATAAAAACTTGTGCTTTATTTC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7777#0 ACNCTCCACAAAAAAATTCACAAATCGATACTCCTCTTCCTCGCTGCGCCACCACGCCGC 60
consensus_7777#1 ------------------------------------------------------------
consensus_7777#0 CGTCGCCGGAGACCGGCCATAGCCGGCAACGTCCTCACCACCACCTGCTGCAAGCCCTCC 120
consensus_7777#1 ------------------------------------------------------------
consensus_7777#0 CCCACAGCCTTCGGTTGCTGCTGCTTCAGTTTCCTCCAAGTGCGAGACGACCCGATCTGC 180
consensus_7777#1 ------------------------------------------------------------
consensus_7777#0 ATCCTCTACTGGTTCTTCGTCTTCAACACTGCTGCTGCTCGTTCTGCTNCGATCTGTGGC 240
consensus_7777#1 ATCCTCTACTGGTTCTTCGTCTTCAACACTGCTGCTGCTCGTTCTGCTTCGATCTGTGGC 60
************************************************ ***********
consensus_7777#0 TGCTGNTTCTGCCTCTACACCGGGGACGCCAAGCTACNGCTGGTGCTTCAAGCTCTACTT 300
consensus_7777#1 TGCTGCTTCTGCCTCTACACCAGGGACGCCAAGCTACTGCTGGTGCTTCAAGCTCTACTT 120
***** *************** *************** **********************
consensus_7777#0 CCAGGACGCCGATCTGCANCCTTCTTCTTCACTGCTGCCTAAAAATCTTCATCCTACTTC 360
consensus_7777#1 CCAGGACGCCGATCTGCAACCTTCTTCTTCACTGCTGCCTAAAAATCTTCATCCTACTTC 180
****************** *****************************************
consensus_7777#0 CAGTGCTTCAACAACAGTTTCATCACTTGGGTTTATTCTTTCCTATCCTCACTTCTTANA 420
consensus_7777#1 CAGTGCTTCGACAACAGTTTCATCACTTGGGTTTATTCTTTCCTATCCTCAGTT---AGA 237
********* ***************************************** ** * *
consensus_7777#0 TAAAAACTTGNGCNTTATTTNAGAGATTTGATCACTGACGATTGTGAATTTACTTTCCTG 480
consensus_7777#1 TAAAAACTTGTGCTTTATTTCAGAGATTTGATCACTG-TGATTGTAAATTTACTTTCCTG 296
********** ** ****** **************** ****** **************
consensus_7777#0 CACTTCTAATACNGGNACATAGTGGTNTTTT-GNCCAGATTANNTGCTATGATGATAAAT 539
consensus_7777#1 CACTTCTAATACTGGAACATAGTGTTTTTTTTGTCCAGATTAGCTTCTCTGTTGTTAAAT 356
************ ** ******** * **** * ******** * ** ** ** *****
consensus_7777#0 TGCTGCANTCTGAGTTACCTAGNT--GGCTACGGGNACTATAATTTNGTAGAT------- 590
consensus_7777#1 TGCTGAAATCTGAGTTACCTAGGTCTGAGTCTGTGTTTTATTTTGCAGTAGAAGCTTTAT 416
***** * ************** * * * * * *** * *****
consensus_7777#0 --------------------------------------------
consensus_7777#1 TTTGTTCTAAATTTAAATGCCCTATTGTTGCCTTTTAAAAAAAA 460
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||