cluster # 7786

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Oryza sativa
cluster # 7786 cluster # 7786 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7786#0 length = 909 sequences # 2

consensus_7786#1 length = 547 sequences # 2
consensus_7786#2 length = 244 sequences # 1

consensusID : consensus_7786#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 909
fasta sequence

                              [TTTTTTTTTTCACAGCTAATTTGGTTTCTGATAGTTCCTTTAGTAGATCAATGGTCTGAATGTTGCAATGTTGAACATTCAAAGACATAAGGTTAATCTTGAGCATCANATCAAAACAATTAGACAGGTACNTAGCTAGAGTTCATTACAAGGTTAGCAGCCTACAATGATCATTACATCAGAGCCTACAACGATCATTACATCAGACAGCACCGGGTTCTCTACTCCTNTGCTATTCCTGAGCCTGTATGTCAGAAACTACAGCCCTACATCAGAGGACGACCTAGGTCACCTATCCATAATTACAACACATGTAAATACAGATAGATACAGGAGATACATAGATTAGAACGGCCGGTTAATCTATGTAAAGTCTCCTCAAAACAGACACCCAAGGCTCAATCAGAGTCACTGTCATGCTCAAGGAAACGATACTCCCTTGGGCCACCAAGCCTTAGTACTATGGTCCCGGCATTTTCCTCATGCCACTCAACGCCTTCCTTCTCCACAAGCTCGGCAACCTACCACAGCCATTTTTACAGAATTCAAAAGCATGGTACATTAGGTAATGAGATTGACCAATTAAGAGTACTAGTCTACAGATTGAAAGAGTAAAGATCAGCAACACAGACACTGTCAAGAGCTGCATGCTAAAAGCATTCTATTATAGTGGGGCCATATAGCCACCACGAGATAGAAAGTAATATAACACAGGAAGGTATCAAGGTATTCAACCAAACATTTCATGAGGGCAGCTCAGTTTCAAGAACATGCTGATAATACTATAAATTTAATGAAGAAACGAAGCATGACAACAAGCAGGCACACATGTGAGGTCCCAGCTTGTCTAAGCAAATACTTACCGCGCGCTTTATTTTTCCCTTCCCTGTGCCTTCTACACCACAACCA]

[-] EMBL BQ908131             [TTTTTTTTTTCACAGCTAATTTGGTTTCTGATAGTTCCTTTAGTAGATCAATGGTCTGAATGTTGCAATGTTGAACATTCAAAGACATAAGGTTAATCTTGAGCATCANATCAAAACAATTAGACAGGTACNTAGCTAGAGTTCATTACAAGGTTAGCAGCCTACAATGATCATTACATCAGAGCCTACAACGATCATTACATCAGACAGCACCGGGTTCTCTACTCCTNTGCTATTCCTGAGCCTGTATGTCAGAAACTACAGCCCTACATCAGAGGACGACCTAGGTCACCTATCCATAATTACAACACATGTAAATACAGATAGATACAGGAGATACATAGATTAGAACGGCCGGTTAATCTATGTAAAGTCTCCTCAAAACAGACACCCAAGGCTCAATCAGAGTCACTGTCATGCTCAAGGAAACGATACTCCCTTGGGCCACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB651716             [                                                                                                                                                        GTTAGCAGCCTACAATGATCATTACATCAGAGCCTACAACGATCATTACATCAGACAGCACC TGTTCTCTACTCCT TGCTATTCCAGAGCCTGTATGTCAGAAACTACAGCCCTACATCAGAGGACGACCTAGGTCACCTATCCATAATTACAACACATGTAAATACAGATAGATACAGGAGATACATAGATTAGAACGGCC GTTAATCTATGTAAAGTCTCCTCAAAACAGACACCCAAGGCTCAATCAGAGTCACTGTCATGCTCAAGGAAACGATACTCCCTTGGGCCACCAAGCCTTAGTACTATGGTCCCGGCATTTTCCTCATGCCACTCAACGCCTTCCTTCTCCACAAGCTCGGCAACCTACCACAGCCATTTTTACAGAATTCAAAAGCATGGTACATTAGGTAATGAGATTGACCAATTAAGAGTACTAGTCTACAGATTGAAAGAGTAAAGATCAGCAACACAGACACTGTCAAGAGCTGCATGCTAAAAGCATTCTATTATAGTGGGGCCATATAGCCACCACGAGATAGAAAGTAATATAACACAGGAAGGTATCAAGGTATTCAACCAAACATTTCATGAGGGCAGCTCAGTTTCAAGAACATGCTGATAATACTATAAATTTAATGAAGAAACGAAGCATGACAACAAGCAGGCACACATGTGAGGTCCCAGCTTGTCTAAGCAAATACTTACCGCGCGCTTTATTTTTCCCTTCCCTGTGCCTTCTACACCACAACCA]




>consensus_7786#0
TTTTTTTTTTCACAGCTAATTTGGTTTCTGATAGTTCCTTTAGTAGATCAATGGTCTGAA
TGTTGCAATGTTGAACATTCAAAGACATAAGGTTAATCTTGAGCATCANATCAAAACAAT
TAGACAGGTACNTAGCTAGAGTTCATTACAAGGTTAGCAGCCTACAATGATCATTACATC
AGAGCCTACAACGATCATTACATCAGACAGCACCGGGTTCTCTACTCCTNTGCTATTCCT
GAGCCTGTATGTCAGAAACTACAGCCCTACATCAGAGGACGACCTAGGTCACCTATCCAT
AATTACAACACATGTAAATACAGATAGATACAGGAGATACATAGATTAGAACGGCCGGTT
AATCTATGTAAAGTCTCCTCAAAACAGACACCCAAGGCTCAATCAGAGTCACTGTCATGC
TCAAGGAAACGATACTCCCTTGGGCCACCAAGCCTTAGTACTATGGTCCCGGCATTTTCC
TCATGCCACTCAACGCCTTCCTTCTCCACAAGCTCGGCAACCTACCACAGCCATTTTTAC
AGAATTCAAAAGCATGGTACATTAGGTAATGAGATTGACCAATTAAGAGTACTAGTCTAC
AGATTGAAAGAGTAAAGATCAGCAACACAGACACTGTCAAGAGCTGCATGCTAAAAGCAT
TCTATTATAGTGGGGCCATATAGCCACCACGAGATAGAAAGTAATATAACACAGGAAGGT
ATCAAGGTATTCAACCAAACATTTCATGAGGGCAGCTCAGTTTCAAGAACATGCTGATAA
TACTATAAATTTAATGAAGAAACGAAGCATGACAACAAGCAGGCACACATGTGAGGTCCC
AGCTTGTCTAAGCAAATACTTACCGCGCGCTTTATTTTTCCCTTCCCTGTGCCTTCTACA
CCACAACCA

consensusID : consensus_7786#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 547
fasta sequence

                              [TGTTTCTGATAGTTCCTCTATTAGATCAATTGTCTGAATGTTGCAATGTTGACATTCAAGACATAAGTTATCTTGAGCATCACATCAAAACAATTAGACAGGTACATAGCTAGAGTTCATTACAAGGTTAGCAGCCTACAATGATCATTACATCAGAGCCTACAACGATCATTACATCAGACAGCACCTGTTCTCTACTCCTTGCTATTCCAGAGCCTGTATGTCAGAAACTACAGCCCTACATCAGAGGACGACCTAGGTCACCTATCCATAATTACAACACATGTAAATACAGATAGATACAGGAGATACATAGATTAGAACGGCCGTTAATCTATGTAAAGTCTCCTCAAAACAGACACCCAAGGCTCAATCAGAGTCACTGTCATGCTCAAGGAAACGATACTCCCTTGGGCCACCAAGCCTTAGTACTATGGTCCCGGCATTTTCCTCATGCCACTCAACGCCTTCCTTCTCCACAAGCTCGGCAACCGCGCGCTTTATTTTTCCCTTCCCTGTGCCTTCTACACCACAACCAGTAATTACT]

[+] EMBL CB677322             [TGTTTCTGATAGTTCCTCTATTAGATCAATTGTCTGAATGTTGCAATGTTGACATTCAAGACATAAGTTATCTTGAGCATCACATCAAAACAATTAGACAGGTACATAGCTAGAGTTCATTACAAGGTTAGCAGCCTACAATGATCATTACATCAGAGCCTACAACGATCATTACATCAGACAGCACCTGTTCTCTACTCCTTGCTATTCCAGAGCCTGTATGTCAGAAACTACAGCCCTACATCAGAGGACGACCTAGGTCACCTATCCATAATTACAACACATGTAAATACAGATAGATACAGGAGATACATAGATTAGAACGGCCGTTAATCTATGTAAAGTCTCCTCAAAACAGACACCCAAGGCTCAATCAGAGTCACTGTCATGCTCAAGGAAACGATACTCCCTTGGGCCACCAAGCCTTAGTACTATGGTCCCGGCATTTTCCTCATGCCACTCAACGCCTTCCTTCTCCACAAGCTCGGCAACCGCGCGCTTTATTTTTCCCTTCCCTGTGCCTTCTACACCACAACCAGTAATTACT]
[+] EMBL CB625998             [                                TCTGAATGTTGCAATGTTCACATTCAAGACATAAGTTATCTTGAGCATCACATCAAAACAATTAGACAGGTACATAGCTAGAGTTCATTACAAGGTTAGCAGCCTACAATGATCATTACATCAGAGCCTACAACGATCATTACATCAGACAGCACCTGTTCTCTACTCCTTGCTATTCCTGAGCCTGTATGTCAGAAACTACAGCCCTACATCAGAGGACGACCTAGGTCACCTATCCATAATTACAACACATGTAAATACAGATAGATACAGGAGATACATAGATTAGAACGGCCGTTAATCTATGTAAAGTCTCCTCAAAACAGACACCCAAGGCTCAATCAGAGTCACCGTCATGCTCAAGGAAACGATACTCCCTTGGGCCACCAAGCCTTAGTACTATGGTCCCGGCATTTTCCTCATGCCACTCAACGCCTTCCTTCTCCACAAGCTCGGCAACCGCGCGCTTTATTTTTCCCTTCCCTGTGCCTTCTACACCACAACCAGTAATTACT]




>consensus_7786#1
TGTTTCTGATAGTTCCTCTATTAGATCAATTGTCTGAATGTTGCAATGTTGACATTCAAG
ACATAAGTTATCTTGAGCATCACATCAAAACAATTAGACAGGTACATAGCTAGAGTTCAT
TACAAGGTTAGCAGCCTACAATGATCATTACATCAGAGCCTACAACGATCATTACATCAG
ACAGCACCTGTTCTCTACTCCTTGCTATTCCAGAGCCTGTATGTCAGAAACTACAGCCCT
ACATCAGAGGACGACCTAGGTCACCTATCCATAATTACAACACATGTAAATACAGATAGA
TACAGGAGATACATAGATTAGAACGGCCGTTAATCTATGTAAAGTCTCCTCAAAACAGAC
ACCCAAGGCTCAATCAGAGTCACTGTCATGCTCAAGGAAACGATACTCCCTTGGGCCACC
AAGCCTTAGTACTATGGTCCCGGCATTTTCCTCATGCCACTCAACGCCTTCCTTCTCCAC
AAGCTCGGCAACCGCGCGCTTTATTTTTCCCTTCCCTGTGCCTTCTACACCACAACCAGT
AATTACT

consensusID : consensus_7786#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 244
fasta sequence

                              [CNNACATGATCATAACATCAGNGCNTACANCGATCATTANNTCAGACNGCACCTGTTTTNTANTCCTTGNTATTCCTGAGCCTGTATGTCAGAAANTACAGCCTTACATCAGAGGACGACNTAGGTCACCTATCCATAATTACAACACATGTNCNTACAGATAGATACAGGAGATACATTGATTAGAACGGCCGTCCNTNTATGTAAAGTCTCCTCAAAACAGACACCCAGGCTCAATCAGAGT]

[-] EMBL BE228721             [CNNACATGATCATAACATCAGNGCNTACANCGATCATTANNTCAGACNGCACCTGTTTTNTANTCCTTGNTATTCCTGAGCCTGTATGTCAGAAANTACAGCCTTACATCAGAGGACGACNTAGGTCACCTATCCATAATTACAACACATGTNCNTACAGATAGATACAGGAGATACATTGATTAGAACGGCCGTCCNTNTATGTAAAGTCTCCTCAAAACAGACACCCAGGCTCAATCAGAGT]




>consensus_7786#2
CNNACATGATCATAACATCAGNGCNTACANCGATCATTANNTCAGACNGCACCTGTTTTN
TANTCCTTGNTATTCCTGAGCCTGTATGTCAGAAANTACAGCCTTACATCAGAGGACGAC
NTAGGTCACCTATCCATAATTACAACACATGTNCNTACAGATAGATACAGGAGATACATT
GATTAGAACGGCCGTCCNTNTATGTAAAGTCTCCTCAAAACAGACACCCAGGCTCAATCA
GAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7786#1      ----------------------TGTTTCTGATAGTTCCTCTATTAGATCAATTGTCTGAA 38
consensus_7786#2      ------------------------------------------------------------
consensus_7786#0      TTTTTTTTTTCACAGCTAATTTGGTTTCTGATAGTTCCTTTAGTAGATCAATGGTCTGAA 60
                                                                                  

consensus_7786#1      TGTTGCAATGTTGA-CATTCAA-GACATAAGTT--ATCTTGAGCATCACATCAAAACAAT 94
consensus_7786#2      ------------------------------------------------------------
consensus_7786#0      TGTTGCAATGTTGAACATTCAAAGACATAAGGTTAATCTTGAGCATCANATCAAAACAAT 120
                                                                                  

consensus_7786#1      TAGACAGGTACATAGCTAGAGTTCATTACAAGGTTAGCAGCCTACAATGATCATTACATC 154
consensus_7786#2      ----------------------------------------CNNACA-TGATCATAACATC 19
consensus_7786#0      TAGACAGGTACNTAGCTAGAGTTCATTACAAGGTTAGCAGCCTACAATGATCATTACATC 180
                                                              *  *** ******* *****

consensus_7786#1      AGAGCCTACAACGATCATTACATCAGACAGCACCTG-TTCTCTACTCCTT-GCTATTCCA 212
consensus_7786#2      AGNGCNTACANCGATCATTANNTCAGACNGCACCTG-TTTTNTANTCCTT-GNTATTCCT 77
consensus_7786#0      AGAGCCTACAACGATCATTACATCAGACAGCACCGGGTTCTCTACTCCTNTGCTATTCCT 240
                      ** ** **** *********  ****** ***** * ** * ** ****  * ****** 

consensus_7786#1      GAGCCTGTATGTCAGAAACTACAGCCCTACATCAGAGGACGACCTAGGTCACCTATCCAT 272
consensus_7786#2      GAGCCTGTATGTCAGAAANTACAGCCTTACATCAGAGGACGACNTAGGTCACCTATCCAT 137
consensus_7786#0      GAGCCTGTATGTCAGAAACTACAGCCCTACATCAGAGGACGACCTAGGTCACCTATCCAT 300
                      ****************** ******* **************** ****************

consensus_7786#1      AATTACAACACATGTAAATACAGATAGATACAGGAGATACATAGATTAGAACGGCCG-TT 331
consensus_7786#2      AATTACAACACATGTNCNTACAGATAGATACAGGAGATACATTGATTAGAACGGCCG-TC 196
consensus_7786#0      AATTACAACACATGTAAATACAGATAGATACAGGAGATACATAGATTAGAACGGCCGGTT 360
                      ***************   ************************ ************** * 

consensus_7786#1      AATCTATGTAAAGTCTCCTCAAAACAGACACCCAAGGCTCAATCAGAGTCACTGTCATGC 391
consensus_7786#2      CNTNTATGTAAAGTCTCCTCAAAACAGACACCCA-GGCTCAATCAGAGT----------- 244
consensus_7786#0      AATCTATGTAAAGTCTCCTCAAAACAGACACCCAAGGCTCAATCAGAGTCACTGTCATGC 420
                        * ****************************** **************           

consensus_7786#1      TCAAGGAAACGATACTCCCTTGGGCCACCAAGCCTTAGTACTATGGTCCCGGCATTTTCC 451
consensus_7786#2      ------------------------------------------------------------
consensus_7786#0      TCAAGGAAACGATACTCCCTTGGGCCACCAAGCCTTAGTACTATGGTCCCGGCATTTTCC 480
                                                                                  

consensus_7786#1      TCATGCCACTCAACGCCTTCCTTCTCCACAAGCTCGGCAACCGCGCGCTTTATTTTTCCC 511
consensus_7786#2      ------------------------------------------------------------
consensus_7786#0      TCATGCCACTCAACGCCTTCCTTCTCCACAAGCTCGGCAACCTACCACAGCCATTTTTAC 540
                                                                                  

consensus_7786#1      T---TCCCTGTGCCTTCTACACCACAACCAGTAATTACT--------------------- 547
consensus_7786#2      ------------------------------------------------------------
consensus_7786#0      AGAATTCAAAAGCATGGTACATTAGGTAATGAGATTGACCAATTAAGAGTACTAGTCTAC 600
                                                                                  

consensus_7786#1      ------------------------------------------------------------
consensus_7786#2      ------------------------------------------------------------
consensus_7786#0      AGATTGAAAGAGTAAAGATCAGCAACACAGACACTGTCAAGAGCTGCATGCTAAAAGCAT 660
                                                                                  

consensus_7786#1      ------------------------------------------------------------
consensus_7786#2      ------------------------------------------------------------
consensus_7786#0      TCTATTATAGTGGGGCCATATAGCCACCACGAGATAGAAAGTAATATAACACAGGAAGGT 720
                                                                                  

consensus_7786#1      ------------------------------------------------------------
consensus_7786#2      ------------------------------------------------------------
consensus_7786#0      ATCAAGGTATTCAACCAAACATTTCATGAGGGCAGCTCAGTTTCAAGAACATGCTGATAA 780
                                                                                  

consensus_7786#1      ------------------------------------------------------------
consensus_7786#2      ------------------------------------------------------------
consensus_7786#0      TACTATAAATTTAATGAAGAAACGAAGCATGACAACAAGCAGGCACACATGTGAGGTCCC 840
                                                                                  

consensus_7786#1      ------------------------------------------------------------
consensus_7786#2      ------------------------------------------------------------
consensus_7786#0      AGCTTGTCTAAGCAAATACTTACCGCGCGCTTTATTTTTCCCTTCCCTGTGCCTTCTACA 900
                                                                                  

consensus_7786#1      ---------
consensus_7786#2      ---------
consensus_7786#0      CCACAACCA 909