cluster # 7866

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Oryza sativa
cluster # 7866 cluster # 7866 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7866#0 length = 871 sequences # 4

consensus_7866#1 length = 670 sequences # 1

consensusID : consensus_7866#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 871
fasta sequence

                              [CGAGACAAGGGGAGAGAGAGAGAGAGATAGGGGGGGAGATCGAAGAGATGCGCCTTGCGCACTATGTGACAATTGGTTCAGAATGCACTGCATCACTTGCTAAATATCTTGACAAGCTGAAGAGATCTGAAATCGGTTGGGATGTAAGGGTCGCACTTGGCGTGTATGGTTCCTTCAGCAGTAGAGCCTACCTGAATTCGCAACGGCTCCGGAATCGTCAGATGTACTTCCACAA-GGAGATATTC-AAGACGGCAGACGTGATCGTCTCACCAATGACCGGTGTGACTGCCTACAAGCTGCAAGACGACGCGCTAAAAAGCGGAGAACTGGACTACATAAATGGAGCCGCGTTGGTCCGGTACTCAATTGCAGGAAACTTCCTTGGTTTGCCGGCCATCACCGTCATGGTTGGGTATGACAAAGCCGGGCTGCCCATCGGCCTCCAGTTCATCGGCAGGCCGTGGTCCGAGGCGACTCTGCTCCACATAGCATTTGCAATGCAGGAGGCGTGCAAGAAGCA-CTACAAGAAGCCTGAAGTGTTCTACGATCTCCTCAAGAAAGATTAAATCCGTAGGCTGTATGTATGTCAGAATTCAGAAAATTCAGATCATTGCTTCGATCAAGTCTCCAACATTGAAGAGAATCCATTTTAAGTTAGCAC-GGAAGCTGTTCT-TCCATTTGTGTCA-GGGAGAACAATGTAGCTACATGACCAGAAGGACGAGAGCAAAATTAGATCAATTGCAGAAACTGTTTGATTAGCGGACCAAAAATTAAGTGAAAATGTATGCATTATATGACAAATAGTTTCTGTATGATGGTGCCAAAAAAAAGGGCAAAAATATATATGTGTGAAATTTTAGTAGCAAAAAAA]

[+] EMBL CA767384             [CGAGACAAGGGGAGAGAGAGAGAGAGATAGGGGGGGAGATCGAAGAGATGCGCCTTGCGCACTATGTGACAATTGGTTCAGAATGCACTGCATCACTTGCTAAATATCTTGACAAGCTGAAGAGATCTGAAATCGGTTGGGATGTAAGGGTCGCACTTGGCGTGTATGGTTCCTTCAGCAGTAGAGCCTACCTGAATTCGCAACGGCTCCGGAATCGTCAGATGTACTTCCACAA GGAGATATTC AAGACGGCAGACGTGATCGTCTCACCAATGACCGGTGTGACTGCCTACAAGCTGCAAGACGACGCGCTAAAAAGCGGAGAACTGGACTACATAAATGGAGCCGCGTTGGTCCGGTACTCAATTGCAGGAAACTTCCTTGGTTTGCCGGCCATCACCGTCATGGTTGGGTATGACAAAGCCGGGCTGCCCATCGGCCTCCAGTTCATCGGCAGGCCGTGGTCCGAGGCGACCCTGCTCCACATAGCATTTGCAATGCAGGAGGCGTGCAAGAAGCA CTACAAGAAGCCTGAAGTGTTCTACGATCTCCTCAAGAAAGATTAAATCCGTAGGCTGTATGTATGTCAGAATTCAGAAAATTCAGATCATTGCTTCGATCAAGTCTCCAACATTGAAGAGAATCCATTTTAAGTTAGCACGGGAAGCTGNTCT TCCATTTGTGTCANGGGAGAACAATGTAGCTACATGACCAGAAGGACGAGAGCAAAATTAGATCAATTGCAGAAACTGNTTGATTAGCGGACCAAAAATTAAGTGAAAATGTATGC                                                                                   ]
[+] EMBL CB238487             [                                                 GCGCCCTGCGCACTATGTGACAATTGGTTCAGAATGCACTGCATCACTTGCTAAATATCTTGACAAGCTGAAGAGATCTGAAATCGGTTGCGATGTAAGGGTCGCACTTGGCGTGTATGGTTCCTTCAGCAGTAGAGCCTACCTGAATTCGCAACGGCTCCGGAATCGTCAGATGTACTTCCACAAGGGAGATATTCAAAGACGGCAGACGTGATCGTCTCACCAATGACCGGTGTGACTGCCTACAAGCTGCAAGACGACGCGCTAAAAAGCGGAGAA TATCCTACATAAATGGAGCCGCGTTGGTCCGGTACTCAATTGCAGGAAACTTCCTTGGTTTGCCGGCCATCACCGTCATGGTTGGGTATGACAAAGCCGGGCTGCCCATCGGCCTCCAGTTCATCGGCAGGCCGTGGTCCGAGGCGACTCTGCTCCACATAGCATTTGCAATGCAGGAGGCGTGCAAGAAGCA CTACAAGAAGCCTGAAGTGTTCTACGATCTCCTCAAGAAAGATTAAATCCGTAGGCTGTATGTATGTCAGAATTCAGAAAATTCAG                                                                                                                                                                                                                                                                            ]
[-] EMBL CB684670             [                                                                              CAGAATGCACTGCATCACTTGTTAAATATCTTGACAAGCTGAAGAGATCTGAAATCGGTTGGGATGTAAGGGTCGCACTTGGCGTGTATGGTTCCTTCAGCAGTAGAGCCTACCTGAATTCGCAACGGCTCCGGAATCGTCAGATGTACTTCCACAA GGAGATATTC AAGACGGCAGACGTGATCGTCTCACCAATGACCGGTGTGACTGCCTACAAGCTGCAAGACGACGCGCTAAAAAGCGGAGAACTGGACTACATAAATGGAGCCGCGTTGGTCCGGTACTCAATTGCAGGAAACTTCCTTGGTTTGCCGGCCATCACCGTCATGGTTGGGTATGACAAAGCCGGGCTGCCCATCGGCCTCCAGTTCATCGGCAGGCCGTGGTCCGAGGCGACTCTGCTCCACATAGCATTTGCAATGCAGGAGGCGTGCAAGAAGCA CTACAAGAAGCCTGAAGTGTTTTACGATCTCCTCAAGAAAGATTAAATCCGTAGGCTGTATGTATGTCAGAATTCAGAAAATTCAGATCATTGCTTCGATCAAGTCTCCAACATTGAAGAGAATCCATTTTAAGTTAGCAC GGAAGCTGTTCT TCCATTTGTGTCA GGGAGAACAATGTAGCTACATGACCAGAAGGACGAGAGCAAAATTAGATCAATTGCAGAAACTGTTTGATTAGCGGAACAAAAATTAAGTGAAAATGTATGCATTATATGACAAATAGTTTCTGTATGATGGTGCCAAAAAAAAGGGCAAAAATATATATGTGTGAAATTTTAGTAG        ]
[+] EMBL BM420357             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TCGGCA GCCGTGGTCCGAGGCGACTCTGCTCCACATAGCATTTGC ATGCAGGAGGCGTGCAAGAAGCACCTACAAGAAGCCTGAAGTGTTCTACGATCTCCTCAAGAAAGATTAAATCCGTAGGCTGTATGTATGTCAGAATTCAGAAAATTCAGATCATTGCTTCGATCAAGTCTCC ACATTGAAGAGAATCCATTTTAAGTTAGCAC GGAAGCTGTTCTCTCCATTTGTGTCA GGGAGAACCATGTAGCTACATGACCAGAAGGACGAGAGCAAAATTAGATCAATTGCAGAAACTGTTTGATTAGCGGACC AAAATTAAGTGAAAATGTATGCATTATATGAC AATAGTTTCTGTATGATGGTGCCAAAAAAA  GGC AAAATATATATGTGTGAAATTTTAGTAGCAAAAAAA]




>consensus_7866#0
CGAGACAAGGGGAGAGAGAGAGAGAGATAGGGGGGGAGATCGAAGAGATGCGCCTTGCGC
ACTATGTGACAATTGGTTCAGAATGCACTGCATCACTTGCTAAATATCTTGACAAGCTGA
AGAGATCTGAAATCGGTTGGGATGTAAGGGTCGCACTTGGCGTGTATGGTTCCTTCAGCA
GTAGAGCCTACCTGAATTCGCAACGGCTCCGGAATCGTCAGATGTACTTCCACAAGGAGA
TATTCAAGACGGCAGACGTGATCGTCTCACCAATGACCGGTGTGACTGCCTACAAGCTGC
AAGACGACGCGCTAAAAAGCGGAGAACTGGACTACATAAATGGAGCCGCGTTGGTCCGGT
ACTCAATTGCAGGAAACTTCCTTGGTTTGCCGGCCATCACCGTCATGGTTGGGTATGACA
AAGCCGGGCTGCCCATCGGCCTCCAGTTCATCGGCAGGCCGTGGTCCGAGGCGACTCTGC
TCCACATAGCATTTGCAATGCAGGAGGCGTGCAAGAAGCACTACAAGAAGCCTGAAGTGT
TCTACGATCTCCTCAAGAAAGATTAAATCCGTAGGCTGTATGTATGTCAGAATTCAGAAA
ATTCAGATCATTGCTTCGATCAAGTCTCCAACATTGAAGAGAATCCATTTTAAGTTAGCA
CGGAAGCTGTTCTTCCATTTGTGTCAGGGAGAACAATGTAGCTACATGACCAGAAGGACG
AGAGCAAAATTAGATCAATTGCAGAAACTGTTTGATTAGCGGACCAAAAATTAAGTGAAA
ATGTATGCATTATATGACAAATAGTTTCTGTATGATGGTGCCAAAAAAAAGGGCAAAAAT
ATATATGTGTGAAATTTTAGTAGCAAAAAAA

consensusID : consensus_7866#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 670
fasta sequence

                              [TGTTTAGGTAGCCCGAGGACGAGGCAAGGAGTTTTCAAACGGGCAGACGTGATCGTCTCACCAATGCCCGGTGTGGCTGCCTACAAGTTGCAAGGCGACGCGTTAAAAAGCGGAGAACTGGACTACATAAATGGAGCCGCGTTGGTCCGGTACTCAATTGCAGGAAACTTCCTTGGTTTGCCGGCCATTACCGTCATGGTTGGGTATGACAAAGCCGGGCTGCCCATCGGCCTCCAGTCCATCGGCAGGCCGTGGTCCGAGGCGACTTTGCTCCACATAGCATTTGCAATGCAGGAGGCGTGCAAGAAGCACTACAAGAAGCCTGAAGTGTTTTACGATCTCCTCAAGAAAGATTAAATCCGTAGGCTGTATGTATGTCAGAATTCAGAAAATTCAGATCATTGCTTCGATCAAGTTTCCAACATTGAAGAGAATCCATTTTAAGTTAGCACGGAAGCTGTTTTTCCATTTGTGTCAGGGAGAACAATGTAGCTACATGACCAGAAGGACGAGAGCAAAATTAGATCAATTGCAGAAACTGTTTGATTAGCGGACCAAAAATTAAGTGAAAATGTATGCATTATATGACAAATAGTTTCTGTATGATGGTGCCAAAAAAAGGGCAAAAATATATATGTGTGAAATTTTAGTAGCAAAAAAAAAAAAAAAA]

[-] EMBL CA759666             [TGTTTAGGTAGCCCGAGGACGAGGCAAGGAGTTTTCAAACGGGCAGACGTGATCGTCTCACCAATGCCCGGTGTGGCTGCCTACAAGTTGCAAGGCGACGCGTTAAAAAGCGGAGAACTGGACTACATAAATGGAGCCGCGTTGGTCCGGTACTCAATTGCAGGAAACTTCCTTGGTTTGCCGGCCATTACCGTCATGGTTGGGTATGACAAAGCCGGGCTGCCCATCGGCCTCCAGTCCATCGGCAGGCCGTGGTCCGAGGCGACTTTGCTCCACATAGCATTTGCAATGCAGGAGGCGTGCAAGAAGCACTACAAGAAGCCTGAAGTGTTTTACGATCTCCTCAAGAAAGATTAAATCCGTAGGCTGTATGTATGTCAGAATTCAGAAAATTCAGATCATTGCTTCGATCAAGTTTCCAACATTGAAGAGAATCCATTTTAAGTTAGCACGGAAGCTGTTTTTCCATTTGTGTCAGGGAGAACAATGTAGCTACATGACCAGAAGGACGAGAGCAAAATTAGATCAATTGCAGAAACTGTTTGATTAGCGGACCAAAAATTAAGTGAAAATGTATGCATTATATGACAAATAGTTTCTGTATGATGGTGCCAAAAAAAGGGCAAAAATATATATGTGTGAAATTTTAGTAGCAAAAAAAAAAAAAAAA]




>consensus_7866#1
TGTTTAGGTAGCCCGAGGACGAGGCAAGGAGTTTTCAAACGGGCAGACGTGATCGTCTCA
CCAATGCCCGGTGTGGCTGCCTACAAGTTGCAAGGCGACGCGTTAAAAAGCGGAGAACTG
GACTACATAAATGGAGCCGCGTTGGTCCGGTACTCAATTGCAGGAAACTTCCTTGGTTTG
CCGGCCATTACCGTCATGGTTGGGTATGACAAAGCCGGGCTGCCCATCGGCCTCCAGTCC
ATCGGCAGGCCGTGGTCCGAGGCGACTTTGCTCCACATAGCATTTGCAATGCAGGAGGCG
TGCAAGAAGCACTACAAGAAGCCTGAAGTGTTTTACGATCTCCTCAAGAAAGATTAAATC
CGTAGGCTGTATGTATGTCAGAATTCAGAAAATTCAGATCATTGCTTCGATCAAGTTTCC
AACATTGAAGAGAATCCATTTTAAGTTAGCACGGAAGCTGTTTTTCCATTTGTGTCAGGG
AGAACAATGTAGCTACATGACCAGAAGGACGAGAGCAAAATTAGATCAATTGCAGAAACT
GTTTGATTAGCGGACCAAAAATTAAGTGAAAATGTATGCATTATATGACAAATAGTTTCT
GTATGATGGTGCCAAAAAAAGGGCAAAAATATATATGTGTGAAATTTTAGTAGCAAAAAA
AAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7866#0      CGAGACAAGGGGAGAGAGAGAGAGAGATAGGGGGGGAGATCGAAGAGATGCGCCTTGCGC 60
consensus_7866#1      ------------------------------------------------------------
                                                                                  

consensus_7866#0      ACTATGTGACAATTGGTTCAGAATGCACTGCATCACTTGCTAAATATCTTGACAAGCTGA 120
consensus_7866#1      ------------------------------------------------------------
                                                                                  

consensus_7866#0      AGAGATCTGAAATCGGTTGGGATGTAAGGGTCGCACTTGGCGTGTATGGTTCCTTCAGCA 180
consensus_7866#1      ------------------------------------------------------------
                                                                                  

consensus_7866#0      GTAGAGCCTACCTGAATTCGCAACGGCTCCGGAATCGTCAGATGTACTTCCACAAGGAGA 240
consensus_7866#1      -----------------------TGTTTAGGTAGCCCGAGGACGAG-----GCAAGGAG- 31
                                              *  *  * *  *    ** *        ******* 

consensus_7866#0      TATTCAAGACGGCAGACGTGATCGTCTCACCAATGACCGGTGTGACTGCCTACAAGCTGC 300
consensus_7866#1      TTTTCAAACGGGCAGACGTGATCGTCTCACCAATGCCCGGTGTGGCTGCCTACAAGTTGC 91
                      * *****   ************************* ******** *********** ***

consensus_7866#0      AAGACGACGCGCTAAAAAGCGGAGAACTGGACTACATAAATGGAGCCGCGTTGGTCCGGT 360
consensus_7866#1      AAGGCGACGCGTTAAAAAGCGGAGAACTGGACTACATAAATGGAGCCGCGTTGGTCCGGT 151
                      *** ******* ************************************************

consensus_7866#0      ACTCAATTGCAGGAAACTTCCTTGGTTTGCCGGCCATCACCGTCATGGTTGGGTATGACA 420
consensus_7866#1      ACTCAATTGCAGGAAACTTCCTTGGTTTGCCGGCCATTACCGTCATGGTTGGGTATGACA 211
                      ************************************* **********************

consensus_7866#0      AAGCCGGGCTGCCCATCGGCCTCCAGTTCATCGGCAGGCCGTGGTCCGAGGCGACTCTGC 480
consensus_7866#1      AAGCCGGGCTGCCCATCGGCCTCCAGTCCATCGGCAGGCCGTGGTCCGAGGCGACTTTGC 271
                      *************************** **************************** ***

consensus_7866#0      TCCACATAGCATTTGCAATGCAGGAGGCGTGCAAGAAGCACTACAAGAAGCCTGAAGTGT 540
consensus_7866#1      TCCACATAGCATTTGCAATGCAGGAGGCGTGCAAGAAGCACTACAAGAAGCCTGAAGTGT 331
                      ************************************************************

consensus_7866#0      TCTACGATCTCCTCAAGAAAGATTAAATCCGTAGGCTGTATGTATGTCAGAATTCAGAAA 600
consensus_7866#1      TTTACGATCTCCTCAAGAAAGATTAAATCCGTAGGCTGTATGTATGTCAGAATTCAGAAA 391
                      * **********************************************************

consensus_7866#0      ATTCAGATCATTGCTTCGATCAAGTCTCCAACATTGAAGAGAATCCATTTTAAGTTAGCA 660
consensus_7866#1      ATTCAGATCATTGCTTCGATCAAGTTTCCAACATTGAAGAGAATCCATTTTAAGTTAGCA 451
                      ************************* **********************************

consensus_7866#0      CGGAAGCTGTTCTTCCATTTGTGTCAGGGAGAACAATGTAGCTACATGACCAGAAGGACG 720
consensus_7866#1      CGGAAGCTGTTTTTCCATTTGTGTCAGGGAGAACAATGTAGCTACATGACCAGAAGGACG 511
                      *********** ************************************************

consensus_7866#0      AGAGCAAAATTAGATCAATTGCAGAAACTGTTTGATTAGCGGACCAAAAATTAAGTGAAA 780
consensus_7866#1      AGAGCAAAATTAGATCAATTGCAGAAACTGTTTGATTAGCGGACCAAAAATTAAGTGAAA 571
                      ************************************************************

consensus_7866#0      ATGTATGCATTATATGACAAATAGTTTCTGTATGATGGTGCCAAAAAAAAGGGCAAAAAT 840
consensus_7866#1      ATGTATGCATTATATGACAAATAGTTTCTGTATGATGGTGCCAAAAAAA-GGGCAAAAAT 630
                      ************************************************* **********

consensus_7866#0      ATATATGTGTGAAATTTTAGTAGCAAAAAAA--------- 871
consensus_7866#1      ATATATGTGTGAAATTTTAGTAGCAAAAAAAAAAAAAAAA 670
                      *******************************