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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7915#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 968 fasta sequence
[TTTTTTTTTTTTTTTTTGAAATGGGAGCAATTGCGATTCCACCATCTGGGAATCGAGCTACCAAGTTAAATCAGTTGATATCTCCATTTAAAAATCA-GTTCAAGTTGGACAGGCAACACCAATATCACAACGAGCAGTCACC-AGACTATATGTTTGGCCTTCTTTTACGACTGCTACTTAATTCCATCCACCCATGCATTTCAATTCCTCCAATTTAAATGAATGAACCATGTACTATATCAGAAGACCAAGAGCAAATTTAACGAGTCACAACTAAGGAAGAGCTAAGTTTGCTGATTCTCTTTTTTCTTTTTCTATACTGGATAACTTT-GTACAGGC-TTTCATC-GGATGA-TCCCTGCA-TGCC-ATCATATTCCCCGCTATTTGATCAGATTGATACTGAAGGAGAACTTGTGCCATT-AATTTGATCTACACTTCTGCTTTCAGGGAATATAATAATTCCAGATCCCCATGGCCAGAGGCAAGTGAAGGGTACAGCTCTGAAAGAGATTTCTCTTCCTCCAATCTTTCTAAGGCGTCATGATTCAGTTTTATCTCATCTGCACTAGTATCTATGGATGCAAAGCATCCATTGTTGGGGTTCTTCCTGATGAATATCTCCACTTCTTTCGCATGGCGAGACAATTGGAGAGCAACAAACTGGCAAAGATGGCGAACAGAGAATGTCGGTTGGCAACTGAGATAGGGCTTCTCCAATTTAGGCATGCTTTGTCCATTAAGTGGAAGTAGAACAAGATATAAGTTGAACTTATTATCGAATTCATCGGTATTACGTAGGTATTCAACCAACTTGGTAACACGACCACCCTTTGCCATCCTTCCACTGGAACCACCAGAATTGCCATGCCGGGTTTGACTGCGGGTGCCATTTTTTCCCCAGGCAAGCATCTCTCCGCGTAGTGGAGAAGTACTCATGATATCTCTGCCACTTCCTAAGTCATCAATATCCT]
[-] EMBL C99502 [TTTTTTTTTTTTTTTTTGAAATGGGAGCAATTGCGATTCCACCATCTGGGAATCGAGCTACCAAGTTAAATCAGTTGATATCTCCATTTAAAAATCA GTTCAAGTTGGACAGGCAACACCAATATCACAACGAGCAGTCACC AGACTATATGTTTGGCCTTCTTTTACGACTGCTACTTAATTCCATCCACCCATGCATTTCAATTCCTCCAATTTAAATGAATGAACCATGTACTATATCAGAAGACCAAGAGCAAATTTAACGAGTCACAACTAAGGAAGAGCTAAGTTTGCTGATTCTCTTTTTTCTTTTTCTATACTGGATAACTTT GTACAGGC TTTCATC GGATGA TCCCTGCA TGCC ATCATATTCCCCGCTATTTGATCNGATTGATACTGAAGGAGAACTTGTGCCATTAAATTTGATCTACACTTCTGCTTTCAGGGg ]
[-] EMBL AU163074 [ tttTTAAATCAGTTGATATCTCCATTTAAAAATCA GTTCAAGTTGGACAGGCAACACCAATATCACAACGAGCAGTCACC AGACTATATGTTTGGCCTTCTTTTACGACTGCTACTTAATTCCATCCACCCATGCATTTCAATTCCTCCAATTTAAATGAATGAACCATGTACTATATCAGAAGACCAAGAGCAAATTTAACGAGTCACAACTAAGGAAGAGCTAAGTTTGCTGATTCTCTNTTTTCNTTTTCTATACTGGATAACTTTGGTACAGGCTTTTCATCGGGATGANTCCCTGCATTGCCAATCATATTCCCCGCTATTTGga ]
[-] EMBL C73723 [ ATCAGGTTCAAGTTGGACAGGCAACNCCAATATCACAACGAGCAGTCACCAAGACTATATGTTTGGCCTTCTTTTACGACTGCTACTTAATTCCATCCACCCATGCATTTCAATTCCTCCAATTTAAATGAATGAACCATGTACTATATCAGAAGACCAAGAGCAAATTTAACGAGTCACAACTAAGGAAGAGCTAAGTTTGCTGATTCTCTTTTTTCTTTTTCTATACTGGATAACTTT GTACAGGC TTTCATC GGATGA TCCCTGCA TGCC ATCATATTCCCCGCTATTTGATCAGATTGATACTGAAGGAGAACTTGTGCCATT AATTTGATCTACACTTCTGCTTTCAGGGAATATAATAA ]
[+] EMBL CB663746 [ AACCATGTACTATATCAGAAGACCAAGAGCAAATTTAACGAGTCACAACTAAGGAAGAGCTAAGTTTGCTGATTCTCTTTTTTCTTTTTCTATACTGGATAACTTT GTACAGGC TTTCATC GGATGA TCCCTGCA TGCC ATCATATTCCCCGCTATTTGATCAGATTGATACTGAAGGAGAACTTGTGCCATT AATTTGATCTACACTTCTGCTTTCAGGGAATATAATAATTCCAGATCCCCATGGCCAGAGGCAAGTGAAGGGTACAGCTCTGAAAGAGATTTCTCTTCCTCCAATCTTTCTAAGGCGTCATGATTCAGTTTTATCTCATCTGCACTAGTATCTATGGATGCAAAGCATCCATTGTTGGGGTTCTTCCTGATGAATATCTCCACTTCTTTCGCATGGCGAGACAATTGGAGAGCAACAAACTGGCAAAGATGGCGAACAGAGAATGTCGGTTGGCAACTGAGATAGGGCTTCTCCAATTTAGGCATGCTTTGTCCATTAAGTGGAAGTAGAACAAGATATAAGTTGAACTTATTATCGAATTCATCGGTATTACGTAGGTATTCAACCAACTTGGTAACACGACCACCCTTTGCCATCCTTCCACTGGAACCACCAGAATTGCCATGCCGGGTTTGACTGCGGGTGCCATTTTTTCCCCAGGCAAGCATCTCTCCGCGTAGTGGAGAAGTACTCATGATATCTCTGCCACTTCCTAAGTCATCAATATCCT]
consensusID : consensus_7915#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence
[TTTTTTTTTTTTTTTTTTTTGCTACTTAATTCCATCCACCCATGCATTTCAATTCCTCCAATTTAAATGAATGAACCATGTACTATATCAAAAGACCAAGAGCAAATTTAACGAGTCACAACTAAGGAAGAGCTAAGTTTGCTGATTCTCTTTTTTCTTTTTCTATACGGGATAACTTTGTACAGGCTTTCATCGGATGATCCCTGCATGCCATCATATTCCCCGCTATTTGATCAGATTGATACTGAAGGAGAACTTGTGCCATTAATTTGATCTACACTTCTGCTTTCAGGGAATATAATAATTCCAGATCCCCATGGCCAGAGGCAAGTGAAGGGTACAGCTCTAAAAGAGATTTCTCTTCCTCCAATCTTTCTAAGGCGTCATGATTCAGTTTTATCTCATCTGCACTAGTATCTATGGATGCAAAGCATCCATTGGTTGGGGTTCTTCCTGATGAATATCTCCACTTCTTTCGCATGGCGAGACAATTGGAGAGCAACAAACTGGCAAAGATGGCGAACAGAGAATGTCGGTTGGCAACTGAGATAGGGCTTCTCCAATTTAGGCATGCTTTGTCCATTAAGTGGAAGTAGAACAAGATATAAGTTGAACTTATTATCGAATTCATCGGTATTACGTAGGTATTCAACCAACTTGGTAACA]
[+] EMBL CA762056 [TTTTTTTTTTTTTTTTTTTTGCTACTTAATTCCATCCACCCATGCATTTCAATTCCTCCAATTTAAATGAATGAACCATGTACTATATCAAAAGACCAAGAGCAAATTTAACGAGTCACAACTAAGGAAGAGCTAAGTTTGCTGATTCTCTTTTTTCTTTTTCTATACGGGATAACTTTGTACAGGCTTTCATCGGATGATCCCTGCATGCCATCATATTCCCCGCTATTTGATCAGATTGATACTGAAGGAGAACTTGTGCCATTAATTTGATCTACACTTCTGCTTTCAGGGAATATAATAATTCCAGATCCCCATGGCCAGAGGCAAGTGAAGGGTACAGCTCTAAAAGAGATTTCTCTTCCTCCAATCTTTCTAAGGCGTCATGATTCAGTTTTATCTCATCTGCACTAGTATCTATGGATGCAAAGCATCCATTGGTTGGGGTTCTTCCTGATGAATATCTCCACTTCTTTCGCATGGCGAGACAATTGGAGAGCAACAAACTGGCAAAGATGGCGAACAGAGAATGTCGGTTGGCAACTGAGATAGGGCTTCTCCAATTTAGGCATGCTTTGTCCATTAAGTGGAAGTAGAACAAGATATAAGTTGAACTTATTATCGAATTCATCGGTATTACGTAGGTATTCAACCAACTTGGTAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7915#0 TTTTTTTTTTTTTTTTTGAAATGGGAGCAATTGCGATTCCACCATCTGGGAATCGAGCTA 60
consensus_7915#1 ------------------------------------------------------------
consensus_7915#0 CCAAGTTAAATCAGTTGATATCTCCATTTAAAAATCAGTTCAAGTTGGACAGGCAACACC 120
consensus_7915#1 ------------------------------------------------------------
consensus_7915#0 AATATCACAACGAGCAGTCACCAGACTATATGTTTGGCCTTCTTTTACGACTGCTACTTA 180
consensus_7915#1 --------------------------------TTTTTTTTTTTTTTTTTTTTGCTACTTA 28
*** ** **** *********
consensus_7915#0 ATTCCATCCACCCATGCATTTCAATTCCTCCAATTTAAATGAATGAACCATGTACTATAT 240
consensus_7915#1 ATTCCATCCACCCATGCATTTCAATTCCTCCAATTTAAATGAATGAACCATGTACTATAT 88
************************************************************
consensus_7915#0 CAGAAGACCAAGAGCAAATTTAACGAGTCACAACTAAGGAAGAGCTAAGTTTGCTGATTC 300
consensus_7915#1 CAAAAGACCAAGAGCAAATTTAACGAGTCACAACTAAGGAAGAGCTAAGTTTGCTGATTC 148
** *********************************************************
consensus_7915#0 TCTTTTTTCTTTTTCTATACTGGATAACTTTGTACAGGCTTTCATCGGATGATCCCTGCA 360
consensus_7915#1 TCTTTTTTCTTTTTCTATACGGGATAACTTTGTACAGGCTTTCATCGGATGATCCCTGCA 208
******************** ***************************************
consensus_7915#0 TGCCATCATATTCCCCGCTATTTGATCAGATTGATACTGAAGGAGAACTTGTGCCATTAA 420
consensus_7915#1 TGCCATCATATTCCCCGCTATTTGATCAGATTGATACTGAAGGAGAACTTGTGCCATTAA 268
************************************************************
consensus_7915#0 TTTGATCTACACTTCTGCTTTCAGGGAATATAATAATTCCAGATCCCCATGGCCAGAGGC 480
consensus_7915#1 TTTGATCTACACTTCTGCTTTCAGGGAATATAATAATTCCAGATCCCCATGGCCAGAGGC 328
************************************************************
consensus_7915#0 AAGTGAAGGGTACAGCTCTGAAAGAGATTTCTCTTCCTCCAATCTTTCTAAGGCGTCATG 540
consensus_7915#1 AAGTGAAGGGTACAGCTCTAAAAGAGATTTCTCTTCCTCCAATCTTTCTAAGGCGTCATG 388
******************* ****************************************
consensus_7915#0 ATTCAGTTTTATCTCATCTGCACTAGTATCTATGGATGCAAAGCATCCATTG-TTGGGGT 599
consensus_7915#1 ATTCAGTTTTATCTCATCTGCACTAGTATCTATGGATGCAAAGCATCCATTGGTTGGGGT 448
**************************************************** *******
consensus_7915#0 TCTTCCTGATGAATATCTCCACTTCTTTCGCATGGCGAGACAATTGGAGAGCAACAAACT 659
consensus_7915#1 TCTTCCTGATGAATATCTCCACTTCTTTCGCATGGCGAGACAATTGGAGAGCAACAAACT 508
************************************************************
consensus_7915#0 GGCAAAGATGGCGAACAGAGAATGTCGGTTGGCAACTGAGATAGGGCTTCTCCAATTTAG 719
consensus_7915#1 GGCAAAGATGGCGAACAGAGAATGTCGGTTGGCAACTGAGATAGGGCTTCTCCAATTTAG 568
************************************************************
consensus_7915#0 GCATGCTTTGTCCATTAAGTGGAAGTAGAACAAGATATAAGTTGAACTTATTATCGAATT 779
consensus_7915#1 GCATGCTTTGTCCATTAAGTGGAAGTAGAACAAGATATAAGTTGAACTTATTATCGAATT 628
************************************************************
consensus_7915#0 CATCGGTATTACGTAGGTATTCAACCAACTTGGTAACACGACCACCCTTTGCCATCCTTC 839
consensus_7915#1 CATCGGTATTACGTAGGTATTCAACCAACTTGGTAACA---------------------- 666
**************************************
consensus_7915#0 CACTGGAACCACCAGAATTGCCATGCCGGGTTTGACTGCGGGTGCCATTTTTTCCCCAGG 899
consensus_7915#1 ------------------------------------------------------------
consensus_7915#0 CAAGCATCTCTCCGCGTAGTGGAGAAGTACTCATGATATCTCTGCCACTTCCTAAGTCAT 959
consensus_7915#1 ------------------------------------------------------------
consensus_7915#0 CAATATCCT 968
consensus_7915#1 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||