cluster # 7969

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Oryza sativa
cluster # 7969 cluster # 7969 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7969#0 length = 850 sequences # 3

consensus_7969#1 length = 337 sequences # 2

consensusID : consensus_7969#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 850
fasta sequence

                              [AAATCCACCCACCCAAACTCACGAATTCGATGGACACCGACCTCGGCGGCGGCGGCGGCGCGTCGGGGATGGACGAAGCGGAGGCGGCCTTCTTCGCGCGGCGCGGGCGGCGGTGCTGCTGCTTCCCCTGGCCCTCGTCGGCGTCGTCCCACCAGCGGGTCGGCGGGGCGGAGGAGGAGAGCTGGTGGCAGCGCGCCGTGGACGCGGTGCTCAAGGTGCGGGAGTGGTCGGAGCTGGTGGCCGGGCCGCGGTGGAAGACCTTCATCCGGCGGTTCGGCCGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGCCGCGGCCGCACAACTACGGCCGGAAGCTCAACTACGACGCGCTCAGCTACGCGCTCAACTTCGACGAGGGCCACGGCGCCAGCCCCGAGGGCGACTACACCGGCTACCGCGACTTCTCCGCCCGCTTCGCCGCCCCGCCGGCCTCCGCCAAGTCGTCCATGGACCTCGGCGGCCGCGACGCCCCGCCGCTCTTCAACCCGCCGCCGCCCCACGACGGCGCCGGCCGGGCTTGACCTCTCGTTCCTCTCCCCCACAATCACTTCACCGGATCAAACGAGAACACGGCGTCCTGTCCTCGATTTGCTTCGGGTTGCAATGTCGTGATTTGGTGAGAAGCGAGATCGATCGTTGTTTCGGTTCGGTTCCCCTCTCATCTTCTGTTTCCTTCAATTGAGTTCGTTCGTTACTGTACAAAAAAGAACATAGATTTGTTTAATTCGTTCTCTGTCATCGAATTGTCGCCGTGAATTCGTCGATCGTGTCGTGCCACAGTTTTGTCCCGATTGAAGCAAACACGTTTGAAGTTTTTTGATCAAAA]

[+] EMBL AK108304             [AAATCCACCCACCCAAACTCACGAATTCGATGGACACCGACCTCGGCGGCGGCGGCGGCGCGTCGGGGATGGACGAAGCGGAGGCGGCCTTCTTCGCGCGGCGCGGGCGGCGGTGCTGCTGCTTCCCCTGGCCCTCGTCGGCGTCGTCCCACCAGCGGGTCGGCGGGGCGGAGGAGGAGAGCTGGTGGCAGCGCGCCGTGGACGCGGTGCTCAAGGTGCGGGAGTGGTCGGAGCTGGTGGCCGGGCCGCGGTGGAAGACCTTCATCCGGCGGTTCGGCCGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGCCGCGGCCGCACAACTACGGCCGGAAGCTCAACTACGACGCGCTCAGCTACGCGCTCAACTTCGACGAGGGCCACGGCGCCAGCCCCGAGGGCGACTACACCGGCTACCGCGACTTCTCCGCCCGCTTCGCCGCCCCGCCGGCCTCCGCCAAGTCGTCCATGGACCTCGGCGGCCGCGACGCCCCGCCGCTCTTCAACCCGCCGCCGCCCCACGACGGCGCCGGCCGGGCTTGACCTCTCGTTCCTCTCCCCCACAATCACTTCACCGGATCAAACGAGAACACGGCGTCCTGTCCTCGATTTGCTTCGGGTTGCAATGTCGTGATTTGGTGAGAAGCGAGATCGATCGTTGTTTCGGTTCGGTTCCCCTCTCATCTTCTGTTTCCTTCAATTGAGTTCGTTCGTTACTGTACAAAAAAGAACATAGATTTGTTTAATTCGTTCTCTGTCATCGAATTGTCGCCGTGAATTCGTCGATCGTGTCGTGCCACAGTTTTGTCCCGATTGAAGCAAACACGTTTGAAGTTTT          ]
[+] EMBL AU174409             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CCGCTCTTCAACCCGCCGCCGCCCCACGACGGCGCCGGCCGGGCTTGACCTCTCGTTCCTCTCCCCCACAATCACTTCACCGGATCAAACGAGAACACGGCGTCCTGTCCTCGATTTGCTTCGGGTTGCAATGTCGTGATTTGGTGAGAAGCGAGATCGATCGTTGTTTCGGTTCGGTTCCCCTCTCATCTTCTGTTTCCTTCAATTGAGTTCGTTCGTTACTGTACAAAAAAGAACATAGATTTGTTTAATTCGTTCTCTGTCATCGAATTGTCGCCGTGAATTCGTCGATCGTGTCGTGCCACAGTTTTGTCCCGATTGAAGCAAACACGTTTGAAGTTTTTTGATCAAAA]
[-] EMBL OS1321896            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TTCNGTTCNGTTCCCCTCTCATCTTCTGTTTCCTTCAATTGAGTTCGTTCGTTACTGTACAAAAAAGAACATAGATTTGTTTAATTCGTTCTCTGTCATCGNATTGTCGCCGTGAATTCGTCGNTCGTGTCGTGCCACAGTTTTGTCCCGATTGAAGCAAANACGTTTGA                ]




>consensus_7969#0
AAATCCACCCACCCAAACTCACGAATTCGATGGACACCGACCTCGGCGGCGGCGGCGGCG
CGTCGGGGATGGACGAAGCGGAGGCGGCCTTCTTCGCGCGGCGCGGGCGGCGGTGCTGCT
GCTTCCCCTGGCCCTCGTCGGCGTCGTCCCACCAGCGGGTCGGCGGGGCGGAGGAGGAGA
GCTGGTGGCAGCGCGCCGTGGACGCGGTGCTCAAGGTGCGGGAGTGGTCGGAGCTGGTGG
CCGGGCCGCGGTGGAAGACCTTCATCCGGCGGTTCGGCCGCGGCGGCGGCGGCGGCGGCG
GCGGCGGCGGGCCGCGGCCGCACAACTACGGCCGGAAGCTCAACTACGACGCGCTCAGCT
ACGCGCTCAACTTCGACGAGGGCCACGGCGCCAGCCCCGAGGGCGACTACACCGGCTACC
GCGACTTCTCCGCCCGCTTCGCCGCCCCGCCGGCCTCCGCCAAGTCGTCCATGGACCTCG
GCGGCCGCGACGCCCCGCCGCTCTTCAACCCGCCGCCGCCCCACGACGGCGCCGGCCGGG
CTTGACCTCTCGTTCCTCTCCCCCACAATCACTTCACCGGATCAAACGAGAACACGGCGT
CCTGTCCTCGATTTGCTTCGGGTTGCAATGTCGTGATTTGGTGAGAAGCGAGATCGATCG
TTGTTTCGGTTCGGTTCCCCTCTCATCTTCTGTTTCCTTCAATTGAGTTCGTTCGTTACT
GTACAAAAAAGAACATAGATTTGTTTAATTCGTTCTCTGTCATCGAATTGTCGCCGTGAA
TTCGTCGATCGTGTCGTGCCACAGTTTTGTCCCGATTGAAGCAAACACGTTTGAAGTTTT
TTGATCAAAA

consensusID : consensus_7969#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 337
fasta sequence

                              [CCGCGTCGGGGGAGGGGGAGGGGAGAGGCGGCGGTGGTGGCGGCGGGAGGAAGCTCAACTACGACCCGCTCAGCTACGCGCTCAATTTCGACGAGGGCCACGGCGGCGCGTGCAGCC-CGGAGGGC-GACTACGCCGGCGCACCGACCGAATCTTTTTGTTATTGCTGGGCGGCGGAGGCGATAAGGGTGGACGTCATTTTCTCTCATTTGCTGCTGGTCGATGGTGTCCATAGAAGATGCGCTTGTTTTTGTTTGTATTTTTTTTGTTGCCTTTTTAAAATTTTGTTCACTGTAAATAAAAAAATAGAACTCTATCTATATATATGTATGGATCAAAT]

[+] EMBL AK063118             [CCGCGTCGGGGGAGGGGGAGGGGAGAGGCGGCGGTGGTGGCGGCGGGAGGAAGCTCAACTACGACCCGCTCAGCTACGCGCTCAATTTCGACGAGGGCCACGGCGGCGCGTGCAGCC CGGAGGGC GACTACGCCGGCGCACCGACCGAATCTTTTTGTTATTGCTGGGCGGCGGAGGCGATAAGGGTGGACGTCATTTTCTCTCATTTGCTGCTGGTCGATGGTGTCCATAGAAGATGCGCTTGTTTTTGTTTGTATTTTTTTTGTTGCCTTTTTAAAATTTTGTTCACTGTAAATAAAAAAATAGAACTCTATCTATATATATGTATGGATCAAAT]
[+] EMBL CB680776             [                                                                                           accctcCCCCGCCGTCTCCCTCCGCCGCGCGGGGCTGACGTCGCCGGCGCACCGACCGAATCTTTTTGTTATTGCTGGGCGGCGGAGGCGATAAGGGTGGACGTCATTTTCTCTCATTTGCTGCTGGTCGATGGTGTCCATAGAAGATGCGCTTGTTTTTGTTTGTATTTTTTTTGTTGCCTTTTTAAAATTTTGTTCACTGTAAATAAAAAAATAGAACTCTAT                       ]




>consensus_7969#1
CCGCGTCGGGGGAGGGGGAGGGGAGAGGCGGCGGTGGTGGCGGCGGGAGGAAGCTCAACT
ACGACCCGCTCAGCTACGCGCTCAATTTCGACGAGGGCCACGGCGGCGCGTGCAGCCCGG
AGGGCGACTACGCCGGCGCACCGACCGAATCTTTTTGTTATTGCTGGGCGGCGGAGGCGA
TAAGGGTGGACGTCATTTTCTCTCATTTGCTGCTGGTCGATGGTGTCCATAGAAGATGCG
CTTGTTTTTGTTTGTATTTTTTTTGTTGCCTTTTTAAAATTTTGTTCACTGTAAATAAAA
AAATAGAACTCTATCTATATATATGTATGGATCAAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7969#0      AAATCCACCCACCCAAACTCACGAATTCGATGGACACCGACCTCGGCGGCGGCGGCGGCG 60
consensus_7969#1      ------------------------------------------------------------
                                                                                  

consensus_7969#0      CGTCGGGGATGGACGAAGCGGAGGCGGCCTTCTTCGCGCGGCGCGGGCGGCGGTGCTGCT 120
consensus_7969#1      ------------------------------------------------------------
                                                                                  

consensus_7969#0      GCTTCCCCTGGCCCTCGTCGGCGTCGTCCCACCAGCGGGTCGGCGGGGCGGAGGAGGAGA 180
consensus_7969#1      ------------------------------------------------------------
                                                                                  

consensus_7969#0      GCTGGTGGCAGCGCGCCGTGGACGCGGTGCTCAAGGTGCGGGAGTGGTCGGAGCTGGTGG 240
consensus_7969#1      ------------------------------------------------------------
                                                                                  

consensus_7969#0      CCGGGCCGCGGTGGAAGACCTTCATCCGGCGGTTCGGCCGCGGCGGCGGCGGCGGCGGCG 300
consensus_7969#1      -------------------------------------------CCGCGTCGGGGGAGGGG 17
                                                                 * *** *** ** ** *

consensus_7969#0      GCGGCGGCGGGCCGCGGCCGCACAACTACGGCCGGAAGCTCAACTACGACGCGCTCAGCT 360
consensus_7969#1      GAGGGGAGAGGCGGCGGTGGTG--GCGGCGGGAGGAAGCTCAACTACGACCCGCTCAGCT 75
                      * ** *   *** ****  *     *  ***  ***************** *********

consensus_7969#0      ACGCGCTCAACTTCGACGAGGGCCACGGCGCC------AGCCCCGAGGGCGACTACACCG 414
consensus_7969#1      ACGCGCTCAATTTCGACGAGGGCCACGGCGGCGCGTGCAGCCCGGAGGGCGACTACGCCG 135
                      ********** ******************* *      ***** ************ ***

consensus_7969#0      GCTACCGCGACTTCTCCGCCCGCTTCGCCGCCCCGCCGGCCTCCGCCAAGTCGTCCATGG 474
consensus_7969#1      GC-GCACCGAC----CGAATCTTTTTGTTAT--TGCTGGGC--GGCGGAGGCGATAAGGG 186
                      **  *  ****    *    *  ** *       ** ** *   **  ** **   * **

consensus_7969#0      ACCTCGGCGGCCGCGACGCCCCGCCGCTCTTCAACCCGCCGCCGCCCCACGACGGCGCCG 534
consensus_7969#1      TGGACGTCATTTTCTCTCATTTGCTGCTGGTCGA--TGGTGTCCATAGAAGATG-CGCTT 243
                          ** *     *        ** ***  ** *   *  * *     * ** * ***  

consensus_7969#0      GCCGGGCTTGACCTCTCGTTCCTCTCCCCCACAATCACTTCACCGGATCAAACGAGAACA 594
consensus_7969#1      GTTTTTGTTTGTATTTTTTTTGTTGCCTTTTTAAAATTTTGTTCACTGTAAATAAAAAAA 303
                      *      **    * *  **  *  **     **    **   *     ***  * ** *

consensus_7969#0      CGGCGTCCTGTCCTCGATTTGCTTCGGGTTGCAATGTCGTGATTTGGTGAGAAGCGAGAT 654
consensus_7969#1      TAGAACTCTATC-TATATATATGTATGGATCAAAT------------------------- 337
                        *    ** ** *  ** *   *  ** *  ***                         

consensus_7969#0      CGATCGTTGTTTCGGTTCGGTTCCCCTCTCATCTTCTGTTTCCTTCAATTGAGTTCGTTC 714
consensus_7969#1      ------------------------------------------------------------
                                                                                  

consensus_7969#0      GTTACTGTACAAAAAAGAACATAGATTTGTTTAATTCGTTCTCTGTCATCGAATTGTCGC 774
consensus_7969#1      ------------------------------------------------------------
                                                                                  

consensus_7969#0      CGTGAATTCGTCGATCGTGTCGTGCCACAGTTTTGTCCCGATTGAAGCAAACACGTTTGA 834
consensus_7969#1      ------------------------------------------------------------
                                                                                  

consensus_7969#0      AGTTTTTTGATCAAAA 850
consensus_7969#1      ----------------