cluster # 7995

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Oryza sativa
cluster # 7995 cluster # 7995 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7995#0 length = 1027 sequences # 1

consensus_7995#1 length = 563 sequences # 3
consensus_7995#2 length = 520 sequences # 1

consensusID : consensus_7995#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1027
fasta sequence

                              [CTCGCCTCGCTTCCGCGGCAATCCCGTTCGTGCAAGGGCGCTCGATCTCCTCCTCCTCCGCCGGATCTCCCACTAGGATTAGCTCCAATGGGTTTCCTGCAAAACACTTTCTCAGTGTGTGTCGGCATCGGGTGTGGTATCTACATTGCGCAGAACTATGACGTCCCAAACATGAAGAAACTTATGAGGGATTGGATGGGGAAAGCAAAGGAAGTTGAAGAGTCTTACAAGAAGCCTGGCGGTAGCAAAAACTGAAGGACTCCATCATGTTCAGTACAGCCGTCTAATCGTTTTTAGTTTGGGTTTACGCTAAGTAATGGAAAATCTTTCTACTCTATTATCCTTGCTCGTTCAAGATCACCAGTCGTGTACAGCAGGTTCGTTGAACATATACTTGGGTAAGGATTATTCAAGCAGTTGGACATGATCTACAAGTATGGATGTGCATGTTTAAAAATCTTACTACTAGTACAAGTGCCATGATTCAGGACTGTTTAAGGAGTCAAANNNNANAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAACCTGGGGGGGGGCCCGCGGCCCAAATCCCCCCTATAGGGAGGTTTTACCGCGCGCTCCTGGCCCGTTGTTTAACAACGGGTGACTGGAAAACCCTTGGGTTACACAATTATATGGCTGGGAGAAAACCCCTCTTCCCAAGTTGGGTAAAACCCAAAAAGCCCCNACCGATTGCCTTCCCAAAATTGGCAAACCTAAAGTGCAATGGCACCCCCTCTGANCGGCCCATTAACCGCGGGGTGTTTGTGTTCCCCCANTGTACATTAAATTGGCCAGCCCCTAACGCCCGCCTTTTGTTTTTTCCTTTCTTTTTTGCCAGTTGCCGGGTTTCCCGGAAGATTTAAAAGGGGGCCCCTTTTTGGTCCCCATTAAGGCTTTCGGCCCTNCCCCCAAAAAACTTTTTGGGGGGGGGCAACTTGGG]

[+] EMBL BE040133             [CTCGCCTCGCTTCCGCGGCAATCCCGTTCGTGCAAGGGCGCTCGATCTCCTCCTCCTCCGCCGGATCTCCCACTAGGATTAGCTCCAATGGGTTTCCTGCAAAACACTTTCTCAGTGTGTGTCGGCATCGGGTGTGGTATCTACATTGCGCAGAACTATGACGTCCCAAACATGAAGAAACTTATGAGGGATTGGATGGGGAAAGCAAAGGAAGTTGAAGAGTCTTACAAGAAGCCTGGCGGTAGCAAAAACTGAAGGACTCCATCATGTTCAGTACAGCCGTCTAATCGTTTTTAGTTTGGGTTTACGCTAAGTAATGGAAAATCTTTCTACTCTATTATCCTTGCTCGTTCAAGATCACCAGTCGTGTACAGCAGGTTCGTTGAACATATACTTGGGTAAGGATTATTCAAGCAGTTGGACATGATCTACAAGTATGGATGTGCATGTTTAAAAATCTTACTACTAGTACAAGTGCCATGATTCAGGACTGTTTAAGGAGTCAAANNNNANAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAACCTGGGGGGGGGCCCGCGGCCCAAATCCCCCCTATAGGGAGGTTTTACCGCGCGCTCCTGGCCCGTTGTTTAACAACGGGTGACTGGAAAACCCTTGGGTTACACAATTATATGGCTGGGAGAAAACCCCTCTTCCCAAGTTGGGTAAAACCCAAAAAGCCCCNACCGATTGCCTTCCCAAAATTGGCAAACCTAAAGTGCAATGGCACCCCCTCTGANCGGCCCATTAACCGCGGGGTGTTTGTGTTCCCCCANTGTACATTAAATTGGCCAGCCCCTAACGCCCGCCTTTTGTTTTTTCCTTTCTTTTTTGCCAGTTGCCGGGTTTCCCGGAAGATTTAAAAGGGGGCCCCTTTTTGGTCCCCATTAAGGCTTTCGGCCCTNCCCCCAAAAAACTTTTTGGGGGGGGGCAACTTGGG]




>consensus_7995#0
CTCGCCTCGCTTCCGCGGCAATCCCGTTCGTGCAAGGGCGCTCGATCTCCTCCTCCTCCG
CCGGATCTCCCACTAGGATTAGCTCCAATGGGTTTCCTGCAAAACACTTTCTCAGTGTGT
GTCGGCATCGGGTGTGGTATCTACATTGCGCAGAACTATGACGTCCCAAACATGAAGAAA
CTTATGAGGGATTGGATGGGGAAAGCAAAGGAAGTTGAAGAGTCTTACAAGAAGCCTGGC
GGTAGCAAAAACTGAAGGACTCCATCATGTTCAGTACAGCCGTCTAATCGTTTTTAGTTT
GGGTTTACGCTAAGTAATGGAAAATCTTTCTACTCTATTATCCTTGCTCGTTCAAGATCA
CCAGTCGTGTACAGCAGGTTCGTTGAACATATACTTGGGTAAGGATTATTCAAGCAGTTG
GACATGATCTACAAGTATGGATGTGCATGTTTAAAAATCTTACTACTAGTACAAGTGCCA
TGATTCAGGACTGTTTAAGGAGTCAAANNNNANAANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNAAAAAACCTGGGGGGGGGCCCGCGGCCCAAATCCCCCCTATAGGGAGGTTTTACCGCG
CGCTCCTGGCCCGTTGTTTAACAACGGGTGACTGGAAAACCCTTGGGTTACACAATTATA
TGGCTGGGAGAAAACCCCTCTTCCCAAGTTGGGTAAAACCCAAAAAGCCCCNACCGATTG
CCTTCCCAAAATTGGCAAACCTAAAGTGCAATGGCACCCCCTCTGANCGGCCCATTAACC
GCGGGGTGTTTGTGTTCCCCCANTGTACATTAAATTGGCCAGCCCCTAACGCCCGCCTTT
TGTTTTTTCCTTTCTTTTTTGCCAGTTGCCGGGTTTCCCGGAAGATTTAAAAGGGGGCCC
CTTTTTGGTCCCCATTAAGGCTTTCGGCCCTNCCCCCAAAAAACTTTTTGGGGGGGGGCA
ACTTGGG

consensusID : consensus_7995#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 563
fasta sequence

                              [AGGAAATCCGGGAATCCCCTTCGCTCGCCTCGCTTCCGCGGCAATCCCGTTCGTGCAAGGGCGCTCGATCTCCTCCTCCTCCGCCGGATCTCCCACTAGGATTAGCTCCAATGGGTTTCCTGCAAAACACTTTCTCAGTGTGTGTCGGCATCGGGTGTGGTATCTACATTGCGCAGAACTATGACGTCCCAAACATGAAGAAACTTATGAGGGATTGGATGGGGAAAGCAAAGGAAGTTGAAGAGTCTTACAAGAAGCCTGGCGGTAGCAAAAACTGAAGGACTCCATCATGTTCAGTACAGCCGTCTAATCGTTTTTAGTTTGGGTTTACGCTAAGTAATGGAAAATC-TTTCTACTCTATTATCCTTGCTCGTTCAAGATCACCAGTCGTGTACAGCAGGTTCGTT-GAA-CATATACTT-GGGTAA-GGATTATTCAAGCAGTTGG-ACATGATCTACAAGTATGGATGTGCATGTTTAAAAATCTTACTACTAGTACAAGTGCCATGATTCAGGACTGTTTAAGGAGTCATTTTCTTTTCCTCGGCTTCATTAATCATTATCATT]

[+] EMBL AK120705             [AGGAAATCCGGGAATCCCCTTCGCTCGCCTCGCTTCCGCGGCAATCCCGTTCGTGCAAGGGCGCTCGATCTCCTCCTCCTCCGCCGGATCTCCCACTAGGATTAGCTCCAATGGGTTTCCTGCAAAACACTTTCTCAGTGTGTGTCGGCATCGGGTGTGGTATCTACATTGCGCAGAACTATGACGTCCCAAACATGAAGAAACTTATGAGGGATTGGATGGGGAAAGCAAAGGAAGTTGAAGAGTCTTACAAGAAGCCTGGCGGTAGCAAAAACTGAAGGACTCCATCATGTTCAGTACAGCCGTCTAATCGTTTTTAGTTTGGGTTTACGCTAAGTAATGGAAAATC TTTCTACTCTATTATCCTTGCTCGTTCAAGATCACCAGTCGTGTACAGCAGGTTCGTT GAA CATATACTT GGGTAA GGATTATTCAAGCAGTTGG ACATGATCTACAAGTATGGATGTGCATGTTTAAAAATCTTACTACTAGTACAAGTGCCATGATTCAGGACTGTTTAAGGAGTCATTTTCTTTTCCTCGGCTTCATTAATCATTATCATT]
[+] EMBL C97027               [                          GCCTCGCTTCCGCGGCAATCCCGTTCGTGCAAGGGCGCTCGATCTCCTCCTCNTCCGCCGGATCTCCCACTAGGATTAGCTCCAATGGGTTTCCTGCAAAANACTTTCTCAGTGTGTGTCGGCATCGGGTGTGGTATCTACATTGCGCAGAACTATGACGTCCCAAACATGAAGAAACTTATGAGGGATTGGATGGGGAAAGCAAAGGAAGTTGAAGAGTCTTACAAGAAGCCTGGCGGTAGCAAAAACTGAAGGACTCCATCATGTTCAGTACAGCCGTCTAATCGTTTTTAGTTTGGGTTTACGCTAAGTAATGGAAAATCNTTTCTACTCTATTATCCTTNCTCGTTCAAGATCACCAGTCGTGTACAGCAGGTTCGTTGGAACCATATACTTGGGGTAANGGTTTATTCAAGCAGTTGGNCCATGg                                                                                                                 ]
[+] EMBL CB000924             [                           CCTCGCTTCCGCGGCAATCCCGTTCGTGCAAGGGCGCTCGATCTCCTCCTCCTCCGCCGGATCTCCCACTAGGATTAGCTCCAATGGGTTTCCTGCAAAACACTTTCTCAGTGTGTGTCGGCATCGGGTGTGGTATCTACATTGCGCAGAACTATGACGTCCCAAACATGAAGAAACTTATGAGGGATTGGATGGGGAAAGCAAAGGAAGTTGAAGAGTCTTACAAGAAGCCTGGCGGTTTTTAAAACTGAAGGACTCCATCATGTTCAGTACAGCCGTCTAATCGTTTTTAGTTTGGGTTTACGCTAAGTAATGGAAAATC TTTCTACTCTATTATCCTTGCTCGTTCAAGATCACCAGTCGTGTACAGCAGGTTCGTT GAA CATATACTT GGGTAA GGATTATTCAAGCAGTTGG ACATGATCTACAAGTATGGATGTGCATGTTTAAAAATCTTACTACTAGTACAAGTGCCA                                                            ]




>consensus_7995#1
AGGAAATCCGGGAATCCCCTTCGCTCGCCTCGCTTCCGCGGCAATCCCGTTCGTGCAAGG
GCGCTCGATCTCCTCCTCCTCCGCCGGATCTCCCACTAGGATTAGCTCCAATGGGTTTCC
TGCAAAACACTTTCTCAGTGTGTGTCGGCATCGGGTGTGGTATCTACATTGCGCAGAACT
ATGACGTCCCAAACATGAAGAAACTTATGAGGGATTGGATGGGGAAAGCAAAGGAAGTTG
AAGAGTCTTACAAGAAGCCTGGCGGTAGCAAAAACTGAAGGACTCCATCATGTTCAGTAC
AGCCGTCTAATCGTTTTTAGTTTGGGTTTACGCTAAGTAATGGAAAATCTTTCTACTCTA
TTATCCTTGCTCGTTCAAGATCACCAGTCGTGTACAGCAGGTTCGTTGAACATATACTTG
GGTAAGGATTATTCAAGCAGTTGGACATGATCTACAAGTATGGATGTGCATGTTTAAAAA
TCTTACTACTAGTACAAGTGCCATGATTCAGGACTGTTTAAGGAGTCATTTTCTTTTCCT
CGGCTTCATTAATCATTATCATT

consensusID : consensus_7995#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 520
fasta sequence

                              [CGCCTCGCTTCCGCGGCAATCCCGTTCGTGCAACCGTGCTCGATCTCCTCCTCCTCCGCCGGATCTCCCACTAGGATTAGCTCCAATGGGTTTCCTGCAAAACACTTTCTCAGTGTGTGTCGGCATCGGGTGTGGTATCTACATTGCGCAGAACTATGACGTCCCAAACATGAAGAAACTTATGAGGGATTGGATGGGGAAAGCAAAGGAAGTTGAAGAGTCTTACAAGAAGCCTGGCGGTAGCAAAAACTGAAGGACTCCATCATGTTCAGTACAGCCGTCTAATCGTTTTTAGTTTGGGTTTACGCTAAGTAATGGAAAATCTTTCTACTCTATTATCCTTGCTCGTTCAAGATCACCAGTCGTGTACAGCAGGTTCGTTGAACATATACTTGGGTAAGGATTATTCAAGCAGTTGGACATGATCTACAAGTATGGATGTGCATGTTTAAAAATCTTACTACTAGTACAAGTGCCATGATTCAGGACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CA999944             [CGCCTCGCTTCCGCGGCAATCCCGTTCGTGCAACCGTGCTCGATCTCCTCCTCCTCCGCCGGATCTCCCACTAGGATTAGCTCCAATGGGTTTCCTGCAAAACACTTTCTCAGTGTGTGTCGGCATCGGGTGTGGTATCTACATTGCGCAGAACTATGACGTCCCAAACATGAAGAAACTTATGAGGGATTGGATGGGGAAAGCAAAGGAAGTTGAAGAGTCTTACAAGAAGCCTGGCGGTAGCAAAAACTGAAGGACTCCATCATGTTCAGTACAGCCGTCTAATCGTTTTTAGTTTGGGTTTACGCTAAGTAATGGAAAATCTTTCTACTCTATTATCCTTGCTCGTTCAAGATCACCAGTCGTGTACAGCAGGTTCGTTGAACATATACTTGGGTAAGGATTATTCAAGCAGTTGGACATGATCTACAAGTATGGATGTGCATGTTTAAAAATCTTACTACTAGTACAAGTGCCATGATTCAGGACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_7995#2
CGCCTCGCTTCCGCGGCAATCCCGTTCGTGCAACCGTGCTCGATCTCCTCCTCCTCCGCC
GGATCTCCCACTAGGATTAGCTCCAATGGGTTTCCTGCAAAACACTTTCTCAGTGTGTGT
CGGCATCGGGTGTGGTATCTACATTGCGCAGAACTATGACGTCCCAAACATGAAGAAACT
TATGAGGGATTGGATGGGGAAAGCAAAGGAAGTTGAAGAGTCTTACAAGAAGCCTGGCGG
TAGCAAAAACTGAAGGACTCCATCATGTTCAGTACAGCCGTCTAATCGTTTTTAGTTTGG
GTTTACGCTAAGTAATGGAAAATCTTTCTACTCTATTATCCTTGCTCGTTCAAGATCACC
AGTCGTGTACAGCAGGTTCGTTGAACATATACTTGGGTAAGGATTATTCAAGCAGTTGGA
CATGATCTACAAGTATGGATGTGCATGTTTAAAAATCTTACTACTAGTACAAGTGCCATG
ATTCAGGACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7995#0      -----------------------CTCGCCTCGCTTCCGCGGCAATCCCGTTCGTGCAAGG 37
consensus_7995#2      -------------------------CGCCTCGCTTCCGCGGCAATCCCGTTCGTGCAACC 35
consensus_7995#1      AGGAAATCCGGGAATCCCCTTCGCTCGCCTCGCTTCCGCGGCAATCCCGTTCGTGCAAGG 60
                                               *********************************  

consensus_7995#0      GCGCTCGATCTCCTCCTCCTCCGCCGGATCTCCCACTAGGATTAGCTCCAATGGGTTTCC 97
consensus_7995#2      GTGCTCGATCTCCTCCTCCTCCGCCGGATCTCCCACTAGGATTAGCTCCAATGGGTTTCC 95
consensus_7995#1      GCGCTCGATCTCCTCCTCCTCCGCCGGATCTCCCACTAGGATTAGCTCCAATGGGTTTCC 120
                      * **********************************************************

consensus_7995#0      TGCAAAACACTTTCTCAGTGTGTGTCGGCATCGGGTGTGGTATCTACATTGCGCAGAACT 157
consensus_7995#2      TGCAAAACACTTTCTCAGTGTGTGTCGGCATCGGGTGTGGTATCTACATTGCGCAGAACT 155
consensus_7995#1      TGCAAAACACTTTCTCAGTGTGTGTCGGCATCGGGTGTGGTATCTACATTGCGCAGAACT 180
                      ************************************************************

consensus_7995#0      ATGACGTCCCAAACATGAAGAAACTTATGAGGGATTGGATGGGGAAAGCAAAGGAAGTTG 217
consensus_7995#2      ATGACGTCCCAAACATGAAGAAACTTATGAGGGATTGGATGGGGAAAGCAAAGGAAGTTG 215
consensus_7995#1      ATGACGTCCCAAACATGAAGAAACTTATGAGGGATTGGATGGGGAAAGCAAAGGAAGTTG 240
                      ************************************************************

consensus_7995#0      AAGAGTCTTACAAGAAGCCTGGCGGTAGCAAAAACTGAAGGACTCCATCATGTTCAGTAC 277
consensus_7995#2      AAGAGTCTTACAAGAAGCCTGGCGGTAGCAAAAACTGAAGGACTCCATCATGTTCAGTAC 275
consensus_7995#1      AAGAGTCTTACAAGAAGCCTGGCGGTAGCAAAAACTGAAGGACTCCATCATGTTCAGTAC 300
                      ************************************************************

consensus_7995#0      AGCCGTCTAATCGTTTTTAGTTTGGGTTTACGCTAAGTAATGGAAAATCTTTCTACTCTA 337
consensus_7995#2      AGCCGTCTAATCGTTTTTAGTTTGGGTTTACGCTAAGTAATGGAAAATCTTTCTACTCTA 335
consensus_7995#1      AGCCGTCTAATCGTTTTTAGTTTGGGTTTACGCTAAGTAATGGAAAATCTTTCTACTCTA 360
                      ************************************************************

consensus_7995#0      TTATCCTTGCTCGTTCAAGATCACCAGTCGTGTACAGCAGGTTCGTTGAACATATACTTG 397
consensus_7995#2      TTATCCTTGCTCGTTCAAGATCACCAGTCGTGTACAGCAGGTTCGTTGAACATATACTTG 395
consensus_7995#1      TTATCCTTGCTCGTTCAAGATCACCAGTCGTGTACAGCAGGTTCGTTGAACATATACTTG 420
                      ************************************************************

consensus_7995#0      GGTAAGGATTATTCAAGCAGTTGGACATGATCTACAAGTATGGATGTGCATGTTTAAAAA 457
consensus_7995#2      GGTAAGGATTATTCAAGCAGTTGGACATGATCTACAAGTATGGATGTGCATGTTTAAAAA 455
consensus_7995#1      GGTAAGGATTATTCAAGCAGTTGGACATGATCTACAAGTATGGATGTGCATGTTTAAAAA 480
                      ************************************************************

consensus_7995#0      TCTTACTACTAGTACAAGTGCCATGATTCAGGACTGTTTAAGGAGTCAAANNNNANAANN 517
consensus_7995#2      TCTTACTACTAGTACAAGTGCCATGATTCAGGACT------------AAAAAAAAAAAAA 503
consensus_7995#1      TCTTACTACTAGTACAAGTGCCATGATTCAGGACT--------------GTTTAAGGAGT 526
                      ***********************************                   *  *  

consensus_7995#0      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 577
consensus_7995#2      AAAAAAAAAAAAAAAAA------------------------------------------- 520
consensus_7995#1      CATTTTCTTTTCCTCGGCTTCATTAATCATTATCATT----------------------- 563
                                                                                  

consensus_7995#0      NNNNNNNNNNNNNNNNNNNNNNNNNAAAAAACCTGGGGGGGGGCCCGCGGCCCAAATCCC 637
consensus_7995#2      ------------------------------------------------------------
consensus_7995#1      ------------------------------------------------------------
                                                                                  

consensus_7995#0      CCCTATAGGGAGGTTTTACCGCGCGCTCCTGGCCCGTTGTTTAACAACGGGTGACTGGAA 697
consensus_7995#2      ------------------------------------------------------------
consensus_7995#1      ------------------------------------------------------------
                                                                                  

consensus_7995#0      AACCCTTGGGTTACACAATTATATGGCTGGGAGAAAACCCCTCTTCCCAAGTTGGGTAAA 757
consensus_7995#2      ------------------------------------------------------------
consensus_7995#1      ------------------------------------------------------------
                                                                                  

consensus_7995#0      ACCCAAAAAGCCCCNACCGATTGCCTTCCCAAAATTGGCAAACCTAAAGTGCAATGGCAC 817
consensus_7995#2      ------------------------------------------------------------
consensus_7995#1      ------------------------------------------------------------
                                                                                  

consensus_7995#0      CCCCTCTGANCGGCCCATTAACCGCGGGGTGTTTGTGTTCCCCCANTGTACATTAAATTG 877
consensus_7995#2      ------------------------------------------------------------
consensus_7995#1      ------------------------------------------------------------
                                                                                  

consensus_7995#0      GCCAGCCCCTAACGCCCGCCTTTTGTTTTTTCCTTTCTTTTTTGCCAGTTGCCGGGTTTC 937
consensus_7995#2      ------------------------------------------------------------
consensus_7995#1      ------------------------------------------------------------
                                                                                  

consensus_7995#0      CCGGAAGATTTAAAAGGGGGCCCCTTTTTGGTCCCCATTAAGGCTTTCGGCCCTNCCCCC 997
consensus_7995#2      ------------------------------------------------------------
consensus_7995#1      ------------------------------------------------------------
                                                                                  

consensus_7995#0      AAAAAACTTTTTGGGGGGGGGCAACTTGGG 1027
consensus_7995#2      ------------------------------
consensus_7995#1      ------------------------------