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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8011#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 981 fasta sequence
[CACAGTCCTCACTCCTCAGCGGCTCAGCGCAGAGGTCTCGTTCGTGCGGTGTCCCCTGCTGCCGCCCATGCCGCTGCGGCGCGGCGGAGCCCTCCCTCTCAGCGCCCCGCGGGCGGCAGCCGGTGGCCTCCGCGGAGGCGGCGGCCGTGGTGCCGCGCTTCTCCACCCGACCTGCTTGTCGCCGCCGGGAACAACTGGCCGAGCCTTGGGCCTCAGTTGCCAGATGAAAAGAACCAGATGGAAGCCAGTCTTTGCCTTGGAAACAGGTGGACCATCTAACGCTGACAACCAAGATTTCGAAGATGATGGTGGCTTTCTTGGCAGAACAAGGCTGGGAAGACTCATCCAGGCTGCTGCGAGGGAACTACTTGAAAAACTGAATTCTGCCAGGAACAAATCCCCCACAAAGATTTTCCTTGTGCTCCTTGGCTTCTATACCGCCAATGCATTGGCAACAGTCCTGGGGCAGACTGGTGACTGGGATGTTTTTGTTGCTGCTATTGTAGTGGCTACCATTGAGGGAATTGGCATGCTCATGTACAGAAAACCGGCCAGTAGGCCTCCTGGACGATTTTGGTCAATGATCACAATGGTGAACTACTGGAAAGCCGGCGTATGTCTGGGCTTTTTTGTGGACGCGTTCAAAGTGGGAAGCTGAGTTTCCAAATCACCTTCTTATATGTACTTACAAGATTTATTCAGCTGACAATGATACAACGAGTGAACTCCAAGGGTCGAAGCTGCTCCTGTGGTGTTGTATGCAGATAGATATGCTGTGAACTTTACTTCGGCTATAAAATGTACATATGATGTAGTCTTGTCTTGTATGAAATTCATGTAGATATATTATACTCTAGTTTGATGCCCATCTGTTCCTATAGAC-AAATAATGAAGCCTGTTGTAAGATGACTCTGTAGTTGGCTATGTCCACACCAGGCACACTATTTAATTAGCTACTTGTCTTATTGACTAAAAAAAAAA]
[+] EMBL AK059944 [CACAGTCCTCACTCCTCAGCGGCTCAGCGCAGAGGTCTCGTTCGTGCGGTGTCCCCTGCTGCCGCCCATGCCGCTGCGGCGCGGCGGAGCCCTCCCTCTCAGCGCCCCGCGGGCGGCAGCCGGTGGCCTCCGCGGAGGCGGCGGCCGTGGTGCCGCGCTTCTCCACCCGACCTGCTTGTCGCCGCCGGGAACAACTGGCCGAGCCTTGGGCCTCAGTTGCCAGATGAAAAGAACCAGATGGAAGCCAGTCTTTGCCTTGGAAACAGGTGGACCATCTAACGCTGACAACCAAGATTTCGAAGATGATGGTGGCTTTCTTGGCAGAACAAGGCTGGGAAGACTCATCCAGGCTGCTGCGAGGGAACTACTTGAAAAACTGAATTCTGCCAGGAACAAATCCCCCACAAAGATTTTCCTTGTGCTCCTTGGCTTCTATACCGCCAATGCATTGGCAACAGTCCTGGGGCAGACTGGTGACTGGGATGTTTTTGTTGCTGCTATTGTAGTGGCTACCATTGAGGGAATTGGCATGCTCATGTACAGAAAACCGGCCAGTAGGCCTCCTGGACGATTTTGGTCAATGATCACAATGGTGAACTACTGGAAAGCCGGCGTATGTCTGGGCTTTTTTGTGGACGCGTTCAAAGTGGGAAGCTGAGTTTCCAAATCACCTTCTTATATGTACTTACAAGATTTATTCAGCTGACAATGATACAACGAGTGAACTCCAAGGGTCGAAGCTGCTCCTGTGGTGTTGTATGCAGATAGATATGCTGTGAACTTTACTTCGGCTATAAAATGTACATATGATGTAGTCTTGTTTTGTATGAAATTCATGTAGATATATTATACTCTAGTTTGATGCCCATCTGTTCCTATAGAC AAATAATGAAGCCTGTTGTAAGATGACTCTGTAGTTGGCTATGTCCACACCAGGCACACTATTTAATTAGC ]
[-] EMBL CB632995 [ GAAAAGAACCAGATGGAAGTCAGTCTTTGCCTTGGAAACAGGTGGACCATCTAACGCTGACAACCAAGATTTCGAAGATGATGGTGGCTTTCTTGGCAGAACAAGGCTGGGAAGACTCATCCAGGCTGCTGCGAGGGAACTACTTGAAAAACTGAATTCTGCCAGGAACAAATCCCCCACAAAGATTTTCCTTGTGCTCCTTGGCTTCTATACCGCCAATGCATTGGCAACAGTCCTGGGGCAGACTGGTGACTGGGATGTTTTTGTTGCTGCTATTGTAGTGGCTACCATTGAGGGAATTGGCATGCTCATGTACAGAAAACCGGCCAGTAGGCCTCCTGGACGATTTTGGTCAATGATCACAATGGTGAACTACTGGAAAGCCGGCGTATGTCTGGGCTTTTTTGTGGACGCGTTCAAAGTGGGAAGCTGAGTTTCCAAATCACCTTCTTATATGTACTTACAAGATTTATTCAGCTGACAATGATACAACGAGTGAACTCCAAGGGTCGAAGCTGCTCCTGTGGTGTTGTATGCAGATAGATATGCTGTGAACTTTACTTCGGCTATAAAATGTACATATGATGTAGTCTTGTCTTGTATGAAATTCATGTAGATATATTATACTCTAGTTTGATGCCCATCTGTTCCTATAGAC AAATAATGAAGCCTGTTGTAAGATGACTCTGTAGTTGGCTATGTCCACACCAGGCACACTATTTAATTAGCTACTTGTCTTATTGA ]
[+] EMBL BM420838 [ TTGTAGTGGCTACCATTGAGGGAATTGGCATGCTCATGTACAGAAAACCGGCCAGTAGGCCTCCTGGACGATTTTGGTCAATGATCAC ATGGTGAACTACTGGAAAGCCGGCGTATGTCTGGGCTTTTTTGTGGACGCGTTCAAAGTGGGAAGCTGAGTTTCCAAATCACCTTCTTATATGTACTTACAAGATTCATTCAGCTGACAATGATACAACGAGTGAACTCCAAGGGTCGAAGCTGCTCCTGTGGTGTTGTATGCAGATAGATATGCTGTGAACTTTACTTCGGCTATAAAATGTACATATGATGTAGTCTTGTCTTGTATGAAATTCATGTAGATATATTATACTCTAGTTTGATGCCCATCTGTTCCTATAGACAAAATAATGAAGCCTGTTGTAAGATGACTCTGTAGTTGGCTATGTCCACACCAGGCACACTATTTAATTAGCTACTTGTCTTATTGACTAAAAAAAAAA]
consensusID : consensus_8011#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 733 fasta sequence
[CTNAATGGCTGATACCAAGACTTCGAAGATGATGTGCTTTCTTGTAGAACAAGCTGGGAAGGCTCATCCAAGCTGCTGGGAGGGAACTACTTGAAAAGCTGAACTCTGCCAGAAGCACTCCCCCCGAAGATATTCCTTGTGCTGTTTGGCTTCTATACCGCCACGCATTGGCAACAATCCTAGGGCAGACTGGTGACTGGGATGTTCTTGTGGCTGGTGTTGTAGTGGCTGCTATAGAGGGAATTGGCATGCTTATGTACAGAAAACCGATGAGTAGACCTCCTGGACGATTCCAGTCATTGATTGCAATGGTGAACTACTGGAAAGCCGGCGTATGTCTGGGCCTTTTTGTGGATGCCTTCAAACTGGGAAGCTGAGTTCCCTTCCCACTATCAACTTCTTGTATCAACTTACTAATGTTATTGATTCATTGAGCTCACAATGACACGTGGAATGAACTCCCNNAGGCTCCCAACTGCTACCGTGTTGTTGTATGCAGATAAATTTGCTGCGAAGCGTAAACATTACTTCTCGGCTATAAAATGTACATATGTTGATGTAGTCTTCTATGAAATTCTTGTAGTATTACACTAGTCTGATGTCCATATGTGTCTATAGATAAATAATGGTGTCTGTTGTAAGATGACTATTGTTGGCTATTTCCACACCAGGC-AACC-TTTAATAAAAAAATTCTCTCATTGATTATTACCCAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BI805516 [CTNAATGGCTGATACCAAGACTTCGAAGATGATGTGCTTTCTTGTAGAACAAGCTGGGAAGGCTCATCCAAGCTGCTGGGAGGGAACTACTTGAAAAGCTGAACTCTGCCAGAAGCACTCCCCCCGAAGATATTCCTTGTGCTGTTTGGCTTCTATACCGCCACGCATTGGCAACAATCCTAGGGCAGACTGGTGACTGGGATGTTCTTGTGGCTGGTGTTGTAGTGGCTGCTATAGAGGGAATTGGCATGCTTATGTACAGAAAACCGATGAGTAGACCTCCTGGACGATTCCAGTCATTGATTGCAATGGTGAACTACTGGAAAGCCGGCGTATGTCTGGGCCTTTTTGTGGATGCCTTCAAACTGGGAAGCTGAGTTCCCTTCCCACTATCAACTTCTTGTATCAACTTACTAATGTTATTGATTCATTGAGCTCACAATGACACGTGGAATGAACTCCCNNAGGCTCCCAACTGCTACCGTGTTGTTGTATGCAGATAAATTTGCTGCGAAGCGTAAACATTACTTCTCGGCTATAAAATGTACATATGTTGATGTAGTCTTCTATGAAATTCTTGTAGTATTACACTAGTCTGATGTCCATATGTGTCTATAGATAAATAATGGTGTCTGTTGTAAGATGACTATTGTTGGCTATTTCCACACCAGGC AACC TTTAATAAAAAAA ]
[+] EMBL AU033120 [ GGGCCTTTTTGTGGATGCCTTCAAACTGGGAAGCTNTGTTCCCTTCCCACTAACAACTTCNTGTATCAACTTACTAATGTTATTGATTCANTGAGCTCACAATGACACGTGGAATGAACNCCC AAGGCTCCAAACTGCTACCGTGTTGTTGTATGCAGATAAATTTGCTGCGAAGCGTAAACATTACTTCTCGGCTATAAAATGTACATATGTTGATGTAGTCTTCTATGAAANTCTTGTAGTATTACACTAGTCTGATGTCCATATGTGTCTATAGATAAATAATGGTGTCTGTTGTAAGATGACTATTGTTGGCTATTTCCACACCAGGCAAACCATTTAATAAGCTGCTTCTCTCATTGATTATTACCCAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8011#0 CACAGTCCTCACTCCTCAGCGGCTCAGCGCAGAGGTCTCGTTCGTGCGGTGTCCCCTGCT 60
consensus_8011#1 ------------------------------------------------------------
consensus_8011#0 GCCGCCCATGCCGCTGCGGCGCGGCGGAGCCCTCCCTCTCAGCGCCCCGCGGGCGGCAGC 120
consensus_8011#1 ------------------------------------------------------------
consensus_8011#0 CGGTGGCCTCCGCGGAGGCGGCGGCCGTGGTGCCGCGCTTCTCCACCCGACCTGCTTGTC 180
consensus_8011#1 ------------------------------------------------------------
consensus_8011#0 GCCGCCGGGAACAACTGGCCGAGCCTTGGGCCTCAGTTGCCAGATGAAAAGAACCAGATG 240
consensus_8011#1 ------------------------------------------------------------
consensus_8011#0 GAAGCCAGTCTTTGCCTTGGAAACAGGTGGACCATCTAACGCTGACAACCAAGATTTCGA 300
consensus_8011#1 ---------------------------------CTNAATGGCTGATA-CCAAGACTTCGA 26
* * ***** * ****** *****
consensus_8011#0 AGATGATGGTGGCTTTCTTGGCAGAACAAGGCTGGGAAGACTCATCCAGGCTGCTGCGAG 360
consensus_8011#1 AGATGATGT--GCTTTCTTG-TAGAACAAG-CTGGGAAGGCTCATCCAAGCTGCTGGGAG 82
******** ********* ******** ******** ******** ******* ***
consensus_8011#0 GGAACTACTTGAAAAACTGAATTCTGCCAGGAACAAATCCCCCACAAAGATTTTCCTTGT 420
consensus_8011#1 GGAACTACTTGAAAAGCTGAACTCTGCCAGAAGCA--CTCCCCCCGAAGATATTCCTTGT 140
*************** ***** ******** * ** **** * ***** ********
consensus_8011#0 GCTCCTTGGCTTCTATACCGCCAATGCATTGGCAACAGTCCTGGGGCAGACTGGTGACTG 480
consensus_8011#1 GCTGTTTGGCTTCTATACCGCCA-CGCATTGGCAACAATCCTAGGGCAGACTGGTGACTG 199
*** ****************** ************ **** *****************
consensus_8011#0 GGATGTTTTTGTTGCTGCTATTGTAGTGGCTACCATTGAGGGAATTGGCATGCTCATGTA 540
consensus_8011#1 GGATGTTCTTGTGGCTGGTGTTGTAGTGGCTGCTATAGAGGGAATTGGCATGCTTATGTA 259
******* **** **** * *********** * ** ***************** *****
consensus_8011#0 CAGAAAACCGGCCAGTAGGCCTCCTGGACGATTTTGGTCAATGATCACAATGGTGAACTA 600
consensus_8011#1 CAGAAAACCGATGAGTAGACCTCCTGGACGATTCCAGTCATTGATTGCAATGGTGAACTA 319
********** ***** ************** **** **** *************
consensus_8011#0 CTGGAAAGCCGGCGTATGTCTGGGCTTTTTTGTGGACGCGTTCAAAGTGGGAAGCTGAGT 660
consensus_8011#1 CTGGAAAGCCGGCGTATGTCTGGGCCTTTTTGTGGATGCCTTCAAACTGGGAAGCTGAGT 379
************************* ********** ** ****** *************
consensus_8011#0 TTCCAA------ATCACCTTCTTATATGTACTTACAA--------GATTTATTCAGCTGA 706
consensus_8011#1 TCCCTTCCCACTATCAACTTCTTGTATCAACTTACTAATGTTATTGATTCATTGAGCTCA 439
* ** **** ****** *** ****** * **** *** **** *
consensus_8011#0 CAATGATACAACGAGTGAACTCC--AAGGGTCGAAGCTGCTCCTGTGGTGTTGTATGCAG 764
consensus_8011#1 CAATGACACGTGGAATGAACTCCCNNAGGCTCCCAACTGCTACCGTGTTGTTGTATGCAG 499
****** ** ** ******** *** ** * ***** * *** ************
consensus_8011#0 ATAGATATGCTGTGAA-------CTTTACTTC--GGCTATAAAATGTACATATGATGTAG 815
consensus_8011#1 ATAAATTTGCTGCGAAGCGTAAACATTACTTCTCGGCTATAAAATGTACATATGTTG--A 557
*** ** ***** *** * ******* ******************** **
consensus_8011#0 TCTTGTCTTGTATGAAATTCATGTAGATATATTATACTCTAGTTTGATGCCCATCTGTTC 875
consensus_8011#1 TGTAGTCTTCTATGAAATTCTTGTAG---TATTACAC--TAGTCTGATGTCCATATGTGT 612
* * ***** ********** ***** ***** ** **** ***** **** ***
consensus_8011#0 CTATAGACAAATAATGAAGCCTGTTGTAAGATGACTCTGTAGTTGGCTATGTCCACACCA 935
consensus_8011#1 CTATAGATAAATAATGGTGTCTGTTGTAAGATGACT--ATTGTTGGCTATTTCCACACCA 670
******* ******** * **************** * ********* *********
consensus_8011#0 GGCACACTATTTAATTAGCTACTTGTCTTATTGACTA------AAAAAAAAA-------- 981
consensus_8011#1 GGCAACC--TTTAATAAAAAAATTCTCTCATTGATTATTACCCAAAAAAAAAAAAAAAAA 728
**** * ****** * * ** *** ***** ** *********
consensus_8011#0 -----
consensus_8011#1 AAAAA 733
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||