cluster # 8025

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Oryza sativa
cluster # 8025 cluster # 8025 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8025#0 length = 694 sequences # 1

consensus_8025#1 length = 611 sequences # 4

consensusID : consensus_8025#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 694
fasta sequence

                              [TTTTTTTGGCCACATAACCTGAGCTTTGATTAGAAAACATACAGACTTCCAGAACTCAGGAGTAACAAACAACTTCAGTTAAGAAAAAAACAGAGAACGAACTTGTTCCTTTGATGTGAATACTTGCAATTTCTATTTCTGACTTCATGTCTCCATATTTACATCATTCAGAAGAAGAAAAATGAAAAAGATTAACTCTACATAATTTGTCAGAAGCTAGAAGCTGCTACTTGTTGGACAAATCCCAAGGATTGTGCAAAGCCACTCCCATAGTGGCAAGGCTTCACAATGGTGCTCAGGAATGCCCTGACAACTTCTTCTGATGCATTTCTTTTGAGCAAGCACATGACATACTCCATAACCTCTGCATCACAAGGCAATGTGATCCCTCCATCGCTTGTGAAGCCGAACTCCTCCTGAGAGATCCTGAGGAGCTCTGCGAAGATCGTCGTGGCGAGGAACGCCAACGGGACCTCGAACCGCCTCCCATCGGCGGTGTACATGATGCAATGGCCCTTCACTGCCACAGAACTGCAGCATTTATCGGTTGCTTTGGGCGCCGTCCATGTAAGTCTCTTCCTGCCGAAGGCTGCCATTCTTTGCCACTTCTTCACCATTTGAGCGAGTCTCTTGGCACTGATCATGGTTGCTCTCTTTCTTTCTTGCCTGAAATTTTTTGTACGAGGTGGGATTC]

[+] EMBL CA759673             [TTTTTTTGGCCACATAACCTGAGCTTTGATTAGAAAACATACAGACTTCCAGAACTCAGGAGTAACAAACAACTTCAGTTAAGAAAAAAACAGAGAACGAACTTGTTCCTTTGATGTGAATACTTGCAATTTCTATTTCTGACTTCATGTCTCCATATTTACATCATTCAGAAGAAGAAAAATGAAAAAGATTAACTCTACATAATTTGTCAGAAGCTAGAAGCTGCTACTTGTTGGACAAATCCCAAGGATTGTGCAAAGCCACTCCCATAGTGGCAAGGCTTCACAATGGTGCTCAGGAATGCCCTGACAACTTCTTCTGATGCATTTCTTTTGAGCAAGCACATGACATACTCCATAACCTCTGCATCACAAGGCAATGTGATCCCTCCATCGCTTGTGAAGCCGAACTCCTCCTGAGAGATCCTGAGGAGCTCTGCGAAGATCGTCGTGGCGAGGAACGCCAACGGGACCTCGAACCGCCTCCCATCGGCGGTGTACATGATGCAATGGCCCTTCACTGCCACAGAACTGCAGCATTTATCGGTTGCTTTGGGCGCCGTCCATGTAAGTCTCTTCCTGCCGAAGGCTGCCATTCTTTGCCACTTCTTCACCATTTGAGCGAGTCTCTTGGCACTGATCATGGTTGCTCTCTTTCTTTCTTGCCTGAAATTTTTTGTACGAGGTGGGATTC]




>consensus_8025#0
TTTTTTTGGCCACATAACCTGAGCTTTGATTAGAAAACATACAGACTTCCAGAACTCAGG
AGTAACAAACAACTTCAGTTAAGAAAAAAACAGAGAACGAACTTGTTCCTTTGATGTGAA
TACTTGCAATTTCTATTTCTGACTTCATGTCTCCATATTTACATCATTCAGAAGAAGAAA
AATGAAAAAGATTAACTCTACATAATTTGTCAGAAGCTAGAAGCTGCTACTTGTTGGACA
AATCCCAAGGATTGTGCAAAGCCACTCCCATAGTGGCAAGGCTTCACAATGGTGCTCAGG
AATGCCCTGACAACTTCTTCTGATGCATTTCTTTTGAGCAAGCACATGACATACTCCATA
ACCTCTGCATCACAAGGCAATGTGATCCCTCCATCGCTTGTGAAGCCGAACTCCTCCTGA
GAGATCCTGAGGAGCTCTGCGAAGATCGTCGTGGCGAGGAACGCCAACGGGACCTCGAAC
CGCCTCCCATCGGCGGTGTACATGATGCAATGGCCCTTCACTGCCACAGAACTGCAGCAT
TTATCGGTTGCTTTGGGCGCCGTCCATGTAAGTCTCTTCCTGCCGAAGGCTGCCATTCTT
TGCCACTTCTTCACCATTTGAGCGAGTCTCTTGGCACTGATCATGGTTGCTCTCTTTCTT
TCTTGCCTGAAATTTTTTGTACGAGGTGGGATTC

consensusID : consensus_8025#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 611
fasta sequence

                              [TTTTTTGATATNAATAATCACAATNTCTATNACNCCCATCATGTTTCCATATTTACATCATTCAAAGGAAGATAAAAGGAGAAAGATTAGCTATACGTAAACTTTCAGAAGCTAGAAGCNGCTACTTGTTGGA-CAGACCCC-AAGGATTGTGCAAAGCCATTCCCATAGTGGCAAGATTTCACAATGGTGCTCAGGAATGCCCTGACAACTTCCTCGGATGCATTTCTTCTAAGCAAGCACAGGACATACTCCATGACCTCTGCATCACAAGGCAATGTGATCCCTCCATCGGTTGTGAAGCCAAACTCCTCCTGAGACATCCTGAGGAGCTCTGCGAAGATCGTCGTGGCGAGGAACGCCAACGGGACCTCAAACCGCCGCCCATCAGCAGTGTACATGATGCAATGGCCCTTCACTGCCACAGAACTGCAGCATTCATCGGTTGCTTTGGGTGTCGTCCATGTGATCCTCTTCCTCCCGAGGGCTGCTATTCTTTGCCACTTCTTTGCCATTTGAGCGAGCCTCTTGGCACTGATCATGGTTGCTCTCCTTCTTTCTTGTCTGAAATTTTTTGTATAAGGTAGTATTCAGCTATGAGATATGTTTGGGTT]

[-] EMBL AU029999             [TTTTTTGATATNAATAATCACAATNTCTATNACNCCCATCATGTTTCCATATTTACATCATTCAAAGGAAGATAAAAGGAGAAAGATTAGCTATACGTAAACTTTCAGAAGCTAGAAGCNGCTACTTGTTGGA CAGACCCC AAGGATTGTGCAAAGCCATNCCCATAGNGGCAAGATTTCACAATGGTGCTCAGGAATNCCCTGACAACNTCCTCGGATGCATTTCNTCTAAGCAAGCAC                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL AK062365             [                ATCACAATGTCTATTACTCCCATCATGTTTCCATATTTACATCATTCAAAGGAAGATAAAAGGAGAAAGATTAGCTATACGTAAACTTTCAGAAGCTAGAAGCTGCTACTTGTTGGA CAGACCCC AAGGATTGTGCAAAGCCATTCCCATAGTGGCAAGATTTCACAATGGTGCTCAGGAATGCCCTGACAACTTCCTCGGATGCATTTCTTCTAAGCAAGCACAGGACATACTCCATGACCTCTGCATCACAAGGCAATGTGATCCCTCCATCGGTTGTGAAGCCAAACTCCTCCTGAGACATCCTGAGGAGCTCTGCGAAGATCATCGTGGCGAGGAACGCCAACGGGACCTCAAACCGCCGCCCATCAGCAGTGTACATGATGCAATGGCCCTTCACTGCCACAGAACTGCAGCATTCATCGGTTGCTTTGGGTGTCGTCCATGTGATCCTCTTCCTCCCGAGGGCTGCTATTCTTTGCCACTTCTTTGCCATTTGAGCGAGCCTCTTGGCACTGATCATGGTTGCTCTCCTTCTTTCTTGTCTGAAATTTTTTGTATAAGGTAGTATTCAGCTATGAGATATGTTTGGGTT]
[-] EMBL OS1321783            [                                                                                                                           ACTTG TGGANAAGACCCCNAAGGATTGTG AAAGCAATCCCCATAGTGGCAAGATTTCACAATGGTGCTCAGGAATGCCCTGACAACTTCCTCGGATGCATTTCTTCTAAGCAAGCACAGGACATACTCCATGACCTCTGCATCACAAGGCAATGTGATCCCTCCATCGGTTGTGAAGCCAAACTCCTCCTGAGACATCCTGAGGAGCTCTGCGAAGATCGTCGT GCGAGGAACGCCAACGGGACCTCAAACCGCCGCCCATCAGCAGTGTACATGATGCAATGGCCCTTCACTGCCACAGAACTGCAGCATTCATCGGTTGCTTTGGGTGTCGTCCATGTGATCCTCTTCCTCCCGAGGGCTGCTATTCTTTGCNACTTCTTTGCCATTTGAGCGA CCTCTTGGCACTGATCATGGTTGCTCTC                                                              ]
[-] EMBL AU172957             [                                                                                                                                                               CATTCCCATAGTGGCAAGATTTCACAATGGTGCTCAGGAATGCCCTGACAACTTCCTCGGATGCATTTCTTCTAAGCAAGCACAGGACATACTCCATGACCTCTGCATCACAAGGCAATGTGATCCCTCCATCGGTTGTGAAGCCAAACTCCTCCTGAGACATCCTGAGGAGCTCTGCGAAGATCGTCGTGGCGAGGAACGCCAACGGGACCTCAAACCGCCGCCCATCAGCAGTGTACATGATGCAATGGCCCTTCACTGCCACAGAACTGCAGCATTCATCGGTTGCTTTGGGTGTCGTCCATGTGATCCTCTTCCTCCCGAGGGCTGCTATTCTTTGCCACTTCTTTGCCATTTGAGCGAGCCTCTTGGCACTGATCATGGTTGCTCTCCTTCTTTCTTGTCTGAAATTTTTTGTATAAGGTAGT                          ]




>consensus_8025#1
TTTTTTGATATNAATAATCACAATNTCTATNACNCCCATCATGTTTCCATATTTACATCA
TTCAAAGGAAGATAAAAGGAGAAAGATTAGCTATACGTAAACTTTCAGAAGCTAGAAGCN
GCTACTTGTTGGACAGACCCCAAGGATTGTGCAAAGCCATTCCCATAGTGGCAAGATTTC
ACAATGGTGCTCAGGAATGCCCTGACAACTTCCTCGGATGCATTTCTTCTAAGCAAGCAC
AGGACATACTCCATGACCTCTGCATCACAAGGCAATGTGATCCCTCCATCGGTTGTGAAG
CCAAACTCCTCCTGAGACATCCTGAGGAGCTCTGCGAAGATCGTCGTGGCGAGGAACGCC
AACGGGACCTCAAACCGCCGCCCATCAGCAGTGTACATGATGCAATGGCCCTTCACTGCC
ACAGAACTGCAGCATTCATCGGTTGCTTTGGGTGTCGTCCATGTGATCCTCTTCCTCCCG
AGGGCTGCTATTCTTTGCCACTTCTTTGCCATTTGAGCGAGCCTCTTGGCACTGATCATG
GTTGCTCTCCTTCTTTCTTGTCTGAAATTTTTTGTATAAGGTAGTATTCAGCTATGAGAT
ATGTTTGGGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8025#0      TTTTTTTGGCCACATAACCTGAGCTTTGATTAGAAAACATACAGACTTCCAGAACTCAGG 60
consensus_8025#1      ------------------------------------------------------------
                                                                                  

consensus_8025#0      AGTAACAAACAACTTCAGTTAAGAAAAAAACAGAGAACGAACTTGTTCCTTTGATGTGAA 120
consensus_8025#1      ----------------------------------------------TTTTTTGATATNAA 14
                                                                    *  ****** * **

consensus_8025#0      TACTTGCAATTTCTATTTCTGACTTCATGTCTCCATATTTACATCATTCAGAAGAAGA-A 179
consensus_8025#1      TAATCACAATNTCTATNACNCCCATCATGTTTCCATATTTACATCATTCAAAGGAAGATA 74
                      ** *  **** *****  *   * ****** ******************* * ***** *

consensus_8025#0      AAATGAAAAAGATTAACTCTACATAATTTGTCAGAAGCTAGAAGCTGCTACTTGTTGGAC 239
consensus_8025#1      AAAGGAGAAAGATTAGCTATACGTAAACTTTCAGAAGCTAGAAGCNGCTACTTGTTGGAC 134
                      *** ** ******** ** *** ***  * *************** **************

consensus_8025#0      AAATCCCAAGGATTGTGCAAAGCCACTCCCATAGTGGCAAGGCTTCACAATGGTGCTCAG 299
consensus_8025#1      AGACCCCAAGGATTGTGCAAAGCCATTCCCATAGTGGCAAGATTTCACAATGGTGCTCAG 194
                      * * ********************* ***************  *****************

consensus_8025#0      GAATGCCCTGACAACTTCTTCTGATGCATTTCTTTTGAGCAAGCACATGACATACTCCAT 359
consensus_8025#1      GAATGCCCTGACAACTTCCTCGGATGCATTTCTTCTAAGCAAGCACAGGACATACTCCAT 254
                      ****************** ** ************ * ********** ************

consensus_8025#0      AACCTCTGCATCACAAGGCAATGTGATCCCTCCATCGCTTGTGAAGCCGAACTCCTCCTG 419
consensus_8025#1      GACCTCTGCATCACAAGGCAATGTGATCCCTCCATCGGTTGTGAAGCCAAACTCCTCCTG 314
                       ************************************ ********** ***********

consensus_8025#0      AGAGATCCTGAGGAGCTCTGCGAAGATCGTCGTGGCGAGGAACGCCAACGGGACCTCGAA 479
consensus_8025#1      AGACATCCTGAGGAGCTCTGCGAAGATCGTCGTGGCGAGGAACGCCAACGGGACCTCAAA 374
                      *** ***************************************************** **

consensus_8025#0      CCGCCTCCCATCGGCGGTGTACATGATGCAATGGCCCTTCACTGCCACAGAACTGCAGCA 539
consensus_8025#1      CCGCCGCCCATCAGCAGTGTACATGATGCAATGGCCCTTCACTGCCACAGAACTGCAGCA 434
                      ***** ****** ** ********************************************

consensus_8025#0      TTTATCGGTTGCTTTGGGCGCCGTCCATGTAAGTCTCTTCCTGCCGAAGGCTGCCATTCT 599
consensus_8025#1      TTCATCGGTTGCTTTGGGTGTCGTCCATGTGATCCTCTTCCTCCCGAGGGCTGCTATTCT 494
                      ** *************** * ********* *  ******** **** ****** *****

consensus_8025#0      TTGCCACTTCTTCACCATTTGAGCGAGTCTCTTGGCACTGATCATGGTTGCTCTCTTTCT 659
consensus_8025#1      TTGCCACTTCTTTGCCATTTGAGCGAGCCTCTTGGCACTGATCATGGTTGCTCTCCTTCT 554
                      ************  ************* *************************** ****

consensus_8025#0      TTCTTGCCTGAAATTTTTTGTACGAGGTGGGATTC---------------------- 694
consensus_8025#1      TTCTTGTCTGAAATTTTTTGTATAAGGTAGTATTCAGCTATGAGATATGTTTGGGTT 611
                      ****** ***************  **** * ****