cluster # 8042

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Oryza sativa
cluster # 8042 cluster # 8042 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8042#0 length = 475 sequences # 3

consensus_8042#1 length = 337 sequences # 2

consensusID : consensus_8042#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 475
fasta sequence

                              [CGCAGAGCCCATACATAGGGCTTATTCGCGCTGTAGAGCTTCTTAGAGAAAGAGGGAGATGGACCTGCCCCAGCCAATGGGAATGACGCAGGGAGCCCAGGCCAGCGGGGAGTGAAAGGCTCTCCTCGTCGGGCTCATCGGTAAACCAACCTGAGCCGTTGACACAGGATTTATTGGCTGATGCTGTGACCTATGAGAGCCCAAATTATTTATCAGATGCGGAAAGCACAAATTCTTTAGGACCAGTAACTGATTTGGCGAGCCCCTTGGATCCATTCTCCATTCACCCAATAATGGATCTTCTTATGGGCAACTATTATTTAGCATTCACAAATGAATCATTGTCTATGGCGGTAACTGTAGTTTTTTTACTACTTCGAGTTTATTTTCTATATATATGGGTCCGTGCAGCATTTCCACGATATCGTTATGATCAATTAATGGGACTTAGCGATGATCCAAAGCTAAAAAATTA]

[+] EMBL AU083570             [CGCAGAGCCCATACATAGGGCTTATTCGCGCTGTAGAGCTTCTTAGAGAAAGAGGGAGATGGACCTGCCCCAGCCAATGGGAATGACGCAGGGAGCCCAGGCCAGCGGGGAGTGAAAGGCTCTCCTCGTCGGGCTCATCGGTAAACCAACCTGAGCCGTTGACACAGGATTTATTGGCTGATGCTGTGACCTATGAGAGCCCAAATTATTTATCAGATGCGGAAAGCACAAATTCTTTAGGACCAGTAACTGATTTGGCGAGCCCCTTGGATCCATTCTCCATTCACCCAATAATGGATCTTCTTATGGGCAACTATTATTTAGCATTCACAAATGAATCATTGTCTATGGCGGTAACTGTAGTTTTTTTACTACTTCGAGTTTATTTTCTATATATATGGGTCCGTGCAGCATTTCCACGATATCGTTATGATCAATTAATGGGACTTAGCGATGATCCAAAGCTAAA      ]
[+] EMBL AU076295             [                                                                                                                                                                                                                           CGGAAAGCACAAATTCTTTAGGACCAGTAACTGATTTGGCGAGCCCCTTGGATCCATTCTCCATTCACCCAATAATGGATCTTCTTATGGGCAACTATTATTTAGCATTCACAAATGAATCATTGTCTATGGCGGTAACTGTAGTTTTTTTACTACTTCGAGTTTATTTTCTATATATATGGGTCCGTGCAGCATTTCCACGATATCGTTATGATCAATTAATGGGACTTAGCGATGATCCAAAGCTAAAAA    ]
[+] EMBL AK062689             [                                                                                                                                                                                                                              AAAGCACAAATTCTTTAGGACCAGTAACTGATTTGGCGAGCCCCTTGGATCCATTCTCCATTCACCCAATAATGGATCTTCTTATGGGCAACTATTATTTAGCATTCACAAATGAATCATTGTTTATGGCGGTAACTGTAGTTTTTTTACTACTTCGAGTTTATTTTCTATATATATGGGTCCGTGCAGCATTTCCACGATATCGTTATGATCAATTAATGGGACTTAGCGATGATCCAAAGCTAAAAGATTA]




>consensus_8042#0
CGCAGAGCCCATACATAGGGCTTATTCGCGCTGTAGAGCTTCTTAGAGAAAGAGGGAGAT
GGACCTGCCCCAGCCAATGGGAATGACGCAGGGAGCCCAGGCCAGCGGGGAGTGAAAGGC
TCTCCTCGTCGGGCTCATCGGTAAACCAACCTGAGCCGTTGACACAGGATTTATTGGCTG
ATGCTGTGACCTATGAGAGCCCAAATTATTTATCAGATGCGGAAAGCACAAATTCTTTAG
GACCAGTAACTGATTTGGCGAGCCCCTTGGATCCATTCTCCATTCACCCAATAATGGATC
TTCTTATGGGCAACTATTATTTAGCATTCACAAATGAATCATTGTCTATGGCGGTAACTG
TAGTTTTTTTACTACTTCGAGTTTATTTTCTATATATATGGGTCCGTGCAGCATTTCCAC
GATATCGTTATGATCAATTAATGGGACTTAGCGATGATCCAAAGCTAAAAAATTA

consensusID : consensus_8042#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 337
fasta sequence

                              [AAATTCTCGGGAACTCCACATACGTATTTCATATATGTATTTCATACATATGAATAGAGACAATTTCAACGAAAGTTCGAATTTGCCAGGGGTCCAAATGGAATGATAAATTGGNGTATATAAAAGACCAACGAAACGACGAGTGAGAAGGATAAGGGGGAGTAGTAGGAGNGAGCTTTCATTGAAGTAGAGGGAGCATAAAAATATGTATTTGCTATGGGACTCCGGTTTGATAAAAGTATAGAGCAGGAAATAGAGGATTTTTTCGGCAAGTTAAAAATTCTGGGANTACAGTAG-CGCAGAGCCCATACATTAGGGCTTATTNCGCGCTGTAGAG]

[+] EMBL AU083569             [AAATTCTCGGGAACTCCACATACGTATTTCATATATGTATTTCATACATATGAATAGAGACAATTTCAACGAAAGTTCGAATTTGCCAGGGGTCCAAATGGAATGATAAATTGGNGTATATAAAAGACCAACGAAACGACGAGTGAGAAGGATAAGGGGGAGTAGTAGGAGNGAGCTTTCATTGAAGTAGAGGGAGCATAAAAATATGTATTTGCTATGGGACTCCGGTTTGATAAAAGTATAGAGCAGGAAATAGAGGATTTTTTCGGCAAGTTAAAAATTCTGGGANTACAGTAG CGCAGAGCCCATACATTAGGGCTTATTNCGC         ]
[+] EMBL AU076296             [AAATTCTCGGGAACTCCACATACGTATTTCATATATGTATTTCATACATATGAATAGAGACAATTTCAACGAAAGTTCGAATTTGCCAGGGGTCCAAATGGAATGA AAA TGG GTATATAAAAGACCAACGAAACGACGAGTGAGAAGGATAAGGGGGAGTAGTAGGAG GAGCTTTCATTGAAGTAGAGGGAGCATAAAAATATGTATTTGCTATGGGACTCCGGTTTGATAAAAGTATAGAGCAGGAAATAGAGGATTTTTTC GCAAG TAAAAA TCT GGA TACAGTAGCCGCAGGGCCCATACA TAGGGCTTATT CGCGCTGTAGAG]




>consensus_8042#1
AAATTCTCGGGAACTCCACATACGTATTTCATATATGTATTTCATACATATGAATAGAGA
CAATTTCAACGAAAGTTCGAATTTGCCAGGGGTCCAAATGGAATGATAAATTGGNGTATA
TAAAAGACCAACGAAACGACGAGTGAGAAGGATAAGGGGGAGTAGTAGGAGNGAGCTTTC
ATTGAAGTAGAGGGAGCATAAAAATATGTATTTGCTATGGGACTCCGGTTTGATAAAAGT
ATAGAGCAGGAAATAGAGGATTTTTTCGGCAAGTTAAAAATTCTGGGANTACAGTAGCGC
AGAGCCCATACATTAGGGCTTATTNCGCGCTGTAGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8042#0      CGCAGAGCCCATACATAGGGCTTATTCGCGCTGTAGAGCTTCTTAGAGAAAGAGGGAGAT 60
consensus_8042#1      ------------------------------------------------------------
                                                                                  

consensus_8042#0      GGACCTGCCCCAGCCAATGGGAATGACGCAGGGAGCCCAGGCCAGCGGGGAGTGAAAGGC 120
consensus_8042#1      ------------------------------------------------AAATTCTCGGGA 12
                                                                        * *    ** 

consensus_8042#0      TCTCCTCGTCGGGCTCATCGGTAAACCAACCTGAGCCGTTGACACAGGATTTATTGGCTG 180
consensus_8042#1      ACTCCACATACGTATTTCATATATGTATTTCATACATATGAATAGAGACAATTTCAACGA 72
                       **** * *  *  *      **       *  *    *  * * **    * *   *  

consensus_8042#0      ATGCTGTGACCTATGAGAG-CCCAAATT-ATTTATCAGATGCGGAAAGCACAAATTCTTT 238
consensus_8042#1      AAGTTCGAATTTGCCAGGGGTCCAAATGGAATGATAAATTGGNGTATATAAAAGACCAAC 132
                      * * *   *  *   ** *  ******  * * ** *  **  * *   * **   *   

consensus_8042#0      AGGACCA-----GTAACTGATTTGGCGAGCCCCTTGGATCCATTCTCCATTCACCCAATA 293
consensus_8042#1      GAAACGACGAGTGAGAAGGATAAGGGGGAGTAGTAGGAGNGAGCTTTCATTGAAGTAG-A 191
                         ** *     *  *  ***  ** *      * ***   *   * **** *   *  *

consensus_8042#0      ATGGATCTTCTTATGGGCAACTATTATTTAGCATTCACAAATGAATCATTGTCTATGGCG 353
consensus_8042#1      GGGAGCATAAAAATATGTATTTGCTAT--GGGACTC-CGGTTTGATAAAAGTATAGAGCA 248
                        *    *    **  * *  *  ***   * * ** *   *  ** *  ** **  ** 

consensus_8042#0      GTAACTGTAGTTTTTTTACTACTTCGAGTTTATT-TTCTATATATATGGGTCCGTGCAGC 412
consensus_8042#1      GGAAATAGAGGATTTTTTCGG---CAAGTTAAAAATTCTGGGANTACAGTAGCGCAGAGC 305
                      * ** *  **  ***** *     * **** *   ****     **  *   **   ***

consensus_8042#0      ATTTCCACGATATCGTTATGATCAATTAATGGGACTTAGCGATGATCCAAAGCTAAAAAA 472
consensus_8042#1      CCATACATTAGGGC-TTATTNCGCGCTGTAGAG--------------------------- 337
                         * **  *   * ****       *   * *                           

consensus_8042#0      TTA 475
consensus_8042#1      ---