cluster # 8052

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Oryza sativa
cluster # 8052 cluster # 8052 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8052#0 length = 848 sequences # 4

consensus_8052#1 length = 591 sequences # 1

consensusID : consensus_8052#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 848
fasta sequence

                              [CCTCGCTCCCCCTCCTCTCGTCCTCACAAGTCGCGAGGAGTCGAGAGGTGAGCGGCAATGGCGGGCGTCGGCTGCCACTTCCTCCTCTCCCTCTCCCCGCCGCTCTACTCCATACGCCGTCCCGCCGCCGCCCACCGCCCGGCCAAAGCGCGATCCCATATCAGCTGTTGCTCGAGGCACGACGACGCAGAGGCATGTTCAACAAGCAAGCCCTTGACCAATGGCAAGGAAGAAGAAAAAACCACTCCTTCCAGACGAAAATGCCTTGCTTGCCTATGTGCTGTGACATTAATCAGTGCATCAGGTCCAACAATGCTTACACCAAACGGACTCGCTTCGGATATGATGAGCAAGCCTGCTGTATGCCGGAATTGCAACGGTAGCGGTGCTGTATTATGTGACATGTGCGGCGGCACTGGAAAATGGAAGGCCCTCAACCGAAAGAGAGCAAAAGATGTCTATCTATTCACAGAGTGCCCAAACTGCTACGGCCGAGGGAAATTGGTGTGTCCAGTTTGTCTAGGAACAGGACTGCCAAACAACAAGGGGCTTCTCCGGCGACCAGACGCCAAGAAGCTGCTCGACAAGATGTACAACGGCAAGATATTGCCAGACTCGTAGATCGTCTCTACAGAATACATGTGAGATATAGTAATTGATAGGATTCGTATGAGATATATAGTCAGGCTCGGGATGTTGCTCAACATTCTCTCCTTTCTCCTGTAGTTCAAATCAACGTTCTAAACTTAATAGATTCATCACAGGAGCATTACATTATTTATTATTTCATCTCAATCATAAGAGCATTGTAGCAATTTTTCACGTTTCAGCAACATAATAACCGTTCT]

[+] EMBL AK120178             [CCTCGCTCCCCCTCCTCTCGTCCTCACAAGTCGCGAGGAGTCGAGAGGTGAGCGGCAATGGCGGGCGTCGGCTGCCACTTCCTCCTCTCCCTCTCCCCGCCGCTCTACTCCATACGCCGTCCCGCCGCCGCCCACCGCCCGGCCAAAGCGCGATCCCATATCAGCTGTTGCTCGAGGCACGACGACGCAGAGGCATGTTCAACAAGCAAGCCCTTGACCAATGGCAAGGAAGAAGAAAAAACCACTCCTTCCAGACGAAAATGCCTTGCTTGCCTATGTGCTGTGACATTAATCAGTGCATCAGGTCCAACAATGCTTACACCAAACGGACTCGCTTCGGATATGATGAGCAAGCCTGCTGTATGCCGGAATTGCAACGGTAGCGGTGCTGTATTATGTGACATGTGCGGCGGCACTGGAAAATGGAAGGCCCTCAACCGAAAGAGAGCAAAAGATGTCTATCTATTCACAGAGTGCCCAAACTGCTACGGCCGAGGGAAATTGGTGTGTCCAGTTTGTCTAGGAACAGGACTGCCAAACAACAAGGGGCTTCTCCGGCGACCAGACGCCAAGAAGCTGCTCGACAAGATGTACAACGGCAAGATATTGCCAGACTCGTAGATCGTCTCTACAGAATACATGTGAGATATAGTAATTGATAGGATTCGTATGAGATATATAGTCAGGCTCGGGATGTTGCTCAACATTCTCTCCTTTCTCCTGTAGTTCAAATCAACGTTCTAAACTTAATAGATTCATCACAGGA                                                                                  ]
[-] EMBL CB685111             [                                                                                                                                                                                                                                                                                               ATTAATCAGTGCATCAGGTCCAACAATGCTTACACCAAACGGACTCGCTTCGGATATGATGAGCAAGCCTGCTGTATGCCGGAATTGCAACGGTAGCGGTGCTGTATTATGTGACATGTGCGGCGGCACTGGAAAATGGAAGGCCCTCAACCGAAAGAGAGCAAAAGATGTCTATCTATTCACAGAGTGCCCAAACTGCTACGGCCGAGGGAAATTGGTGTGTCCAGTTTGTCTAGGAACAGGACTGCCAAACAACAAGGGGCTTCTCCGGCGACCAGACGCCAAGAAGCTGCTCGACAAGATGTACAACGGCAAGATATTGCCAGACTCGTAGATCGTCTCTACAGAATACATGTGAGATATAGTAATTGATAGGATTCGTATGAGATATATAGTCAGGCTCGGGATGTTGCTCAACATTCTCTCCTTTCTCCTGTAGTTCAAATCAACGTTCTAAACTTAATAGATTCATCACAGGAGCATTACATTATTTATTATTTCATCTCAATCATAAGAGCATTGTAGCAATTTTTCA                          ]
[+] EMBL CB685110             [                                                                                                                                                                                                                                                                                                          ccTCTGGGCCAACAATGCTTACACCAAACGGACTCGCTTCGGATATGATGAGCAAGCCTGCTGTATGCCGGAATTGCAACGGTAGCGGTGCTGTATTATGTGACATGTGCGGCGGCACTGGAAAATGGAAGGCCCTCAACCGAAAGAGAGCAAAAGATGTCTATCTATTCACAGAGTGCCCAAACTGCTACGGCCGAGGGAAATTGGTGTGTCCAGTTTGTCTAGGAACAGGACTGCCAAACAACAAGGGGCTTCTCCGGCGACCAGACGCCAAGAAGCTGCTCGACAAGATGTACAACGGCAAGATATTGCCAGACTCGTAGATCGTCTCTACAGAATACATGTGAGATATAGTAATTGATAGGATTCGTATGAGATATATAGTCAGGCTCGGGATGTTGCTCAACATTCTCTCCTTTCTCCTGTAGTTCAAATCAACGTTCTAAACTTAATAGATTCATCACAGGAGCATTACATTATTTATTATTTCATCTCAATCATAAGAGCATTGTAGCAATTTTGCACGTTTCAGCAACATAATAACCGTTCT]
[+] EMBL CA753326             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GGTGTGTCCAGTTTGTCTAGGAACAGGACTGCCAAACAACAAGGGGCTTCTCCGGCGACCAGACGCCAAGAAGCTGCTCGACAAGATGTACAACGGCAAGATATTGCCAGACTCGTAGATCGTCTCTACAGAATACATGTGAGATATAGTAATTGATAGGATTCGTATGAGATATATAGTCAGGCTCGGGATGTTGCTCAACATTCTCTCCTTTCTCCTGTAGTTCAAATCAACGTTCTAAACTTAATAGATTCATCACAGGAGCATTACATTAaaaaaaa                                                                ]




>consensus_8052#0
CCTCGCTCCCCCTCCTCTCGTCCTCACAAGTCGCGAGGAGTCGAGAGGTGAGCGGCAATG
GCGGGCGTCGGCTGCCACTTCCTCCTCTCCCTCTCCCCGCCGCTCTACTCCATACGCCGT
CCCGCCGCCGCCCACCGCCCGGCCAAAGCGCGATCCCATATCAGCTGTTGCTCGAGGCAC
GACGACGCAGAGGCATGTTCAACAAGCAAGCCCTTGACCAATGGCAAGGAAGAAGAAAAA
ACCACTCCTTCCAGACGAAAATGCCTTGCTTGCCTATGTGCTGTGACATTAATCAGTGCA
TCAGGTCCAACAATGCTTACACCAAACGGACTCGCTTCGGATATGATGAGCAAGCCTGCT
GTATGCCGGAATTGCAACGGTAGCGGTGCTGTATTATGTGACATGTGCGGCGGCACTGGA
AAATGGAAGGCCCTCAACCGAAAGAGAGCAAAAGATGTCTATCTATTCACAGAGTGCCCA
AACTGCTACGGCCGAGGGAAATTGGTGTGTCCAGTTTGTCTAGGAACAGGACTGCCAAAC
AACAAGGGGCTTCTCCGGCGACCAGACGCCAAGAAGCTGCTCGACAAGATGTACAACGGC
AAGATATTGCCAGACTCGTAGATCGTCTCTACAGAATACATGTGAGATATAGTAATTGAT
AGGATTCGTATGAGATATATAGTCAGGCTCGGGATGTTGCTCAACATTCTCTCCTTTCTC
CTGTAGTTCAAATCAACGTTCTAAACTTAATAGATTCATCACAGGAGCATTACATTATTT
ATTATTTCATCTCAATCATAAGAGCATTGTAGCAATTTTTCACGTTTCAGCAACATAATA
ACCGTTCT

consensusID : consensus_8052#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 591
fasta sequence

                              [TATGTTCTGTGCCTAATCAGGCATCAGGTCCACAATGCTTACACCAACGGACTCGCTTCGGGATATGATGACAACCTCTGTATGCCGGAATTGCAACGGTAGCGGTCTGTATTATGTGACATGTTCGCGGCACTGGAAAATGGAAGGCCCNCATACCGAAAGAGACAAGATGTCTATCTATTCCCACGAGTGCCCACTGCTACGCCGAGGGAAATTGGTGTGTCCAGTTTGTCTAGGAACAGGACTGCCCAACAACAAGGGGCTTCTCCGGCGACCAGACGCCACAGAAGCTGCTCGACCAGATGTACAACGGCCAGATATTGCCAGACTCGTAGATCGTCTCTACAGAATACATGTGAGATATAGTAATTGATAGGATTCGTATGAGATATATAGTCAGGCTCGGGATGTTGGCTGCAACTTCTGCTGCCTTTGCTGCCTGTAGTTGCAATCACGTTCTGAAACTTAATAGATTCATGCACCCGGAGCTTGACTTATGTTATTATGTTGCATCTCCATCATAAGAGCCTTGTGAGCCATTTNTGGCNNCGTTTCAGCAACATGAATGAACCGTTCNGAAGTCGTTCCAAA]

[+] EMBL BI806138             [TATGTTCTGTGCCTAATCAGGCATCAGGTCCACAATGCTTACACCAACGGACTCGCTTCGGGATATGATGACAACCTCTGTATGCCGGAATTGCAACGGTAGCGGTCTGTATTATGTGACATGTTCGCGGCACTGGAAAATGGAAGGCCCNCATACCGAAAGAGACAAGATGTCTATCTATTCCCACGAGTGCCCACTGCTACGCCGAGGGAAATTGGTGTGTCCAGTTTGTCTAGGAACAGGACTGCCCAACAACAAGGGGCTTCTCCGGCGACCAGACGCCACAGAAGCTGCTCGACCAGATGTACAACGGCCAGATATTGCCAGACTCGTAGATCGTCTCTACAGAATACATGTGAGATATAGTAATTGATAGGATTCGTATGAGATATATAGTCAGGCTCGGGATGTTGGCTGCAACTTCTGCTGCCTTTGCTGCCTGTAGTTGCAATCACGTTCTGAAACTTAATAGATTCATGCACCCGGAGCTTGACTTATGTTATTATGTTGCATCTCCATCATAAGAGCCTTGTGAGCCATTTNTGGCNNCGTTTCAGCAACATGAATGAACCGTTCNGAAGTCGTTCCAAA]




>consensus_8052#1
TATGTTCTGTGCCTAATCAGGCATCAGGTCCACAATGCTTACACCAACGGACTCGCTTCG
GGATATGATGACAACCTCTGTATGCCGGAATTGCAACGGTAGCGGTCTGTATTATGTGAC
ATGTTCGCGGCACTGGAAAATGGAAGGCCCNCATACCGAAAGAGACAAGATGTCTATCTA
TTCCCACGAGTGCCCACTGCTACGCCGAGGGAAATTGGTGTGTCCAGTTTGTCTAGGAAC
AGGACTGCCCAACAACAAGGGGCTTCTCCGGCGACCAGACGCCACAGAAGCTGCTCGACC
AGATGTACAACGGCCAGATATTGCCAGACTCGTAGATCGTCTCTACAGAATACATGTGAG
ATATAGTAATTGATAGGATTCGTATGAGATATATAGTCAGGCTCGGGATGTTGGCTGCAA
CTTCTGCTGCCTTTGCTGCCTGTAGTTGCAATCACGTTCTGAAACTTAATAGATTCATGC
ACCCGGAGCTTGACTTATGTTATTATGTTGCATCTCCATCATAAGAGCCTTGTGAGCCAT
TTNTGGCNNCGTTTCAGCAACATGAATGAACCGTTCNGAAGTCGTTCCAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8052#0      CCTCGCTCCCCCTCCTCTCGTCCTCACAAGTCGCGAGGAGTCGAGAGGTGAGCGGCAATG 60
consensus_8052#1      ------------------------------------------------------------
                                                                                  

consensus_8052#0      GCGGGCGTCGGCTGCCACTTCCTCCTCTCCCTCTCCCCGCCGCTCTACTCCATACGCCGT 120
consensus_8052#1      ------------------------------------------------------------
                                                                                  

consensus_8052#0      CCCGCCGCCGCCCACCGCCCGGCCAAAGCGCGATCCCATATCAGCTGTTGCTCGAGGCAC 180
consensus_8052#1      ------------------------------------------------------------
                                                                                  

consensus_8052#0      GACGACGCAGAGGCATGTTCAACAAGCAAGCCCTTGACCAATGGCAAGGAAGAAGAAAAA 240
consensus_8052#1      ------------------------------------------------------------
                                                                                  

consensus_8052#0      ACCACTCCTTCCAGACGAAAATGCCTTGCTTGCCTATGTGCTGTGACATTAATCAGTGCA 300
consensus_8052#1      ----------------------------------TATGTTCTGTGCC--TAATCAG-GCA 23
                                                        ***** ***** *  ******* ***

consensus_8052#0      TCAGGTCCAACAATGCTTACACCAAACGGACTCGCTTCGG-ATATGATGAGCAAGCCTGC 359
consensus_8052#1      TCAGGTCCA-CAATGCTTACACCAA-CGGACTCGCTTCGGGATATGATGAC--AACCT-C 78
                      ********* *************** ************** *********   * *** *

consensus_8052#0      TGTATGCCGGAATTGCAACGGTAGCGGTGCTGTATTATGTGACATGTGCGGCGGCACTGG 419
consensus_8052#1      TGTATGCCGGAATTGCAACGGTAGCGGT-CTGTATTATGTGACATGTTCG-CGGCACTGG 136
                      **************************** ****************** ** *********

consensus_8052#0      AAAATGGAAGGCCCTCA-ACCGAAAGAGAGCAAAAGATGTCTATCTATTCACA-GAGTGC 477
consensus_8052#1      AAAATGGAAGGCCCNCATACCGAAAGAGA---CAAGATGTCTATCTATTCCCACGAGTGC 193
                      ************** ** ***********    ***************** ** ******

consensus_8052#0      CCAAACTGCTACGGCCGAGGGAAATTGGTGTGTCCAGTTTGTCTAGGAACAGGACTGCCA 537
consensus_8052#1      CCA--CTGCTACG-CCGAGGGAAATTGGTGTGTCCAGTTTGTCTAGGAACAGGACTGCCC 250
                      ***  ******** ********************************************* 

consensus_8052#0      AACAACAAGGGGCTTCTCCGGCGACCAGACGCCA-AGAAGCTGCTCGACAAGATGTACAA 596
consensus_8052#1      AACAACAAGGGGCTTCTCCGGCGACCAGACGCCACAGAAGCTGCTCGACCAGATGTACAA 310
                      ********************************** ************** **********

consensus_8052#0      CGGCAAGATATTGCCAGACTCGTAGATCGTCTCTACAGAATACATGTGAGATATAGTAAT 656
consensus_8052#1      CGGCCAGATATTGCCAGACTCGTAGATCGTCTCTACAGAATACATGTGAGATATAGTAAT 370
                      **** *******************************************************

consensus_8052#0      TGATAGGATTCGTATGAGATATATAGTCAGGCTCGGGATGTTGCT--CAACATTCTCTCC 714
consensus_8052#1      TGATAGGATTCGTATGAGATATATAGTCAGGCTCGGGATGTTGGCTGCAACTTCTGCTGC 430
                      *******************************************    **** *   ** *

consensus_8052#0      TTTCTC---CTGTAGTTCAAATCAACGTTCT-AAACTTAATAGATTCAT-CACA-GGAGC 768
consensus_8052#1      CTTTGCTGCCTGTAGTTGCAATCA-CGTTCTGAAACTTAATAGATTCATGCACCCGGAGC 489
                       **  *   ********  ***** ****** ***************** ***  *****

consensus_8052#0      ATTACATTATTTATTATTT--CATCTCAATCATAAGAGCATTGT-AGCAATTTTT---CA 822
consensus_8052#1      TTGACTTATGTTATTATGTTGCATCTCCATCATAAGAGCCTTGTGAGCCATTTNTGGCNN 549
                       * ** *   ******* *  ****** *********** **** *** **** *     

consensus_8052#0      CGTTTCAGCAACATAAT--AACCGTTCT-------------- 848
consensus_8052#1      CGTTTCAGCAACATGAATGAACCGTTCNGAAGTCGTTCCAAA 591
                      ************** *   ********