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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8073#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1554 fasta sequence
[AAAAAAAAATGGCCAAAACCTTGTAAAAAGCAAAACCCACTCGCCACTAATCGACGCCATTGGCGAGAGCTCGAGCGCGCAACACCACCACGCGGTAGCCTCCCCCAACCTCCACCTCCTCCTCCTCCGCCCGCCCCAGAGCCACCGGATGGCCTCGCTTCTGTAGGAGTAGAGGCGTAGAGCCCAGCGCGAGGGAAGGCGGCGATTGATTTGATTTGACCAAGATTGGTCGGCCGTGCCGTCTGGTCTGAGGAGCCCGGCTCTGGGGGATGGCGGCGGTGGCGGGGGGATCGCGCGCGGCTCCACCGGCGGATTCCGCTGCCGTGGCGGCGGTGGCGAAGGAGGCGGAATACCAGAAGGGCGTGCAGAAGCTGGTGGACCTGCTGTCCAAGCTGAACCCGGCTGCCAAGGAGTTCGTCCCCTCGTCGGCGGCGGTCTCGTCGCCGTCCAGGAAGGCGCTGTCGGCGGACGCGCCGGTGTTCGACTACAACTCGATCGGAGGCTGGAACGGGGGCGGCAAGGAATCCGGCGCCGACGCCTACCAGCAGCGTCGGAGGAGGAATGGATACCTCAGTCAAGGAAGGAGGAGGATGAACGAGAGAGCAAGGCATGCAGACAGGGAAGACAGCATTCGGCGAACTGTTTATGTTTCTGATATTGACCATACTGTGACGGAGGAGAGACTTGCTGATATATTTGCTAACTGTGGGCAAGTCGTTGACTGCAGAATCTGTGGTGATCCACACTCAGTTCTAAGGTTTGCATTCATTGAGTTTGCTGATGAAGAGGGCGCAAGAACTGCACTTAACCTTGGTGGCACAATGCTTGGTTTCTACCCTGTTAGAGTCTTACCTTCAAAGACAGCTATATTGCCTGTGAATCCAAAGTTCCTTCCTAGGACGGAGGATGAGAAGGAAATGGTCATAAGAACTGTTTATTGTACAAACATAGATAAGAAGGTTACTCAATTAGATGTAAAGAATTTCTTTGAAGAACTTTGTGGTGAGGTCTCTCGTTTGAGACTTCTAGGGGATAATGTACATTCTACAAGGATTGCTTTTGTTGAGTTTGTCCATGCCGAGTGTGCCATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAGGGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTCGAACTGACCGCTTGAGCCAAGCTGGATTGTTTACGGGAAGATCGCTTAACCATCACCTATAGCCTTCCGCGATCCAGCGAATTGTGATGCTTTTTTCATTCACCCCTTTTGTCGAAAACTGTTGGAAGGAACTGGTTAAATCAGATCCTTGGGAGTCCGAGTCAGCATCTATGTCTGAGAGTTTATTCATCATGATGGAGAACAACCAATAGACTATCCGCCACTAGATTAATTTCTTTGGCTCCCGATTTTTTTTCCTTCTTTTTCTCAGTGCTACAACTGTTAAAACTGAATCGATATTTAACGTCTTTAGTCTTCACTTGAGGACAATCTCAGTGTCGTTTATAATTTCTCTAAAAAAAAGG]
[+] EMBL AK103702 [AAAAAAAAATGGCCAAAACCTTGTAAAAAGCAAAACCCACTCGCCACTAATCGACGCCATTGGCGAGAGCTCGAGCGCGCAACACCACCACGCGGTAGCCTCCCCCAACCTCCACCTCCTCCTCCTCCGCCCGCCCCAGAGCCACCGGATGGCCTCGCTTCTGTAGGAGTAGAGGCGTAGAGCCCAGCGCGAGGGAAGGCGGCGATTGATTTGATTTGACCAAGATTGGTCGGCCGTGCCGTCTGGTCTGAGGAGCCCGGCTCTGGGGGATGGCGGCGGTGGCGGGGGGATCGCGCGCGGCTCCACCGGCGGATTCCGCTGCCGTGGCGGCGGTGGCGAAGGAGGCGGAATACCAGAAGGGCGTGCAGAAGCTGGTGGACCTGCTGTCCAAGCTGAACCCGGCTGCCAAGGAGTTCGTCCCCTCGTCGGCGGCGGTCTCGTCGCCGTCCAGGAAGGCGCTGTCGGCGGACGCGCCGGTGTTCGACTACAACTCGATCGGAGGCTGGAACGGGGGCGGCAAGGAATCCGGCGCCGACGCCTACCAGCAGCGTCGGAGGAGGAATGGATACCTCAGTCAAGGAAGGAGGAGGATGAACGAGAGAGCAAGGCATGCAGACAGGGAAGACAGCATTCGGCGAACTGTTTATGTTTCTGATATTGACCATACTGTGACGGAGGAGAGACTTGCTGATATATTTGCTAACTGTGGGCAAGTCGTTGACTGCAGAATCTGTGGTGATCCACACTCAGTTCTAAGGTTTGCATTCATTGAGTTTGCTGATGAAGAGGGCGCAAGAACTGCACTTAACCTTGGTGGCACAATGCTTGGTTTCTACCCTGTTAGAGTCTTACCTTCAAAGACAGCTATATTGCCTGTGAATCCAAAGTTCCTTCCTAGGACGGAGGATGAGAAGGAAATGGTCATAAGAACTGTTTATTGTACAAACATAGATAAGAAGGTTACTCAATTAGATGTAAAGAATTTCTTTGAAGAACTTTGTGGTGAGGTCTCTCGTTTGAGACTTCTAGGGGATAATGTACATTCTACAAGGATTGCTTTTGTTGAGTTTGTCCATGCCGAGTGTGCCATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAGGGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTCGAACTGACCGCTTGAGCCAAGCTGGATTGTTTACGGGAAGATCGCTTAACCATCACCTATAGCCTTCCGCGATCCAGCGAATTGTGATGCTTTTTTCATTCACCCCTTTTGTCGAAAACTGTTGGAAGGAACTGGTTAAATCAGATCCTTGGGAGTCCGAGTCAGCATCTATGTCTGAGAGTTTATTCATCATGATGGAGAACAACCAATAGACTATCCGCCACTAGATTAATTTCTTTGGCTCCCGATTTTTTTTCCTTCTTTTTCTCAGTGCTACAACTGTTAAAACTGAATCGATATTTAACGTCTTTAGTCTTCACTTGAGGACAATCTC ]
[+] EMBL CB680102 [ GCAACACCTTCACGCGGTAGCCTCCCCCAACCTCCACCTCCTCCTCCTCCGCCCGCCCCAGAGCCACCGGATGGCCTCGCTTCTGTAGGAGTAGAGGCGTAGAGCCCAGCGCGAGGGAAGGCGGCGATTGATTTGATTTGACCAAGATTGGTCGGCCGTGCCGTCTGGTCTGAGGAGCCCGGCTCTGGGGGATGGCGGCGGTGGCGGGGGGATCGCGCGCGGCTCCACCGGCGGATTCCGCTGCCGTGGCGGCGGTGGCGAAGGAGGCGGAATACCAGAAGGGCGTGCAGAAGCTGGTGGACCTGCTGTCCAAGCTGAACCCGGCTGCCAAGGAGTTCGTCCCCTCGTCGGCGGCGGTCTCGTCGCCGTCCAGGAAGGCGCTGTCGGCGGACGCGCCGGTGTTCGACTACAACTCGATCGGAGGCTGGAACGGGGGCGGCAAGGAATCCGGCGCCGACGCCTACCAGCAGCGTCGGAGGAGGAATGGATACCTCAGTCAAGGAAGGAGGAGGATGAACGAGAGAGCAAGGCATGCAGACAGGGAAGACAGCATTCGGCGAACTGTTTATGTTTCTGATATTGACCATACTGTGACGGAGGAGAGACTTGCTGATATATTTGCTAACTGTGGGCAAGTCGTTGACTGCAGAATCTGTGGTGATCCACACTCAGTTCTAAGGTTTGCATTCATTGAGTTTGCTGATGAAGAGGGCGCAAGAACTGCACTTAACCTTGGTGGCACAAT ]
[+] EMBL CB674593 [ AGCCACCGGATGGCCTCGCTTCTGTAGGAGTAGAGGCGTAGAGCCCAGCGCGAGGGAAGGCGGCGATTGATTTGATTTGACCAAGATTGGTCGGCCGTGCCGTCTGGTCTGAGGAGCCCGGCTCTGGGGGATGGCGGCGGTGGCGGGGGGATCGCGCGCGGCTCCACCGGCGGATTCCGCTGCCGTGGCGGCGGTGGCGAAGGAGGCGGAATACCAGAAGGGCGTGCAGAAGCTGGTGGACCTGCTGTCCAAGCTGAACCCGGCTGCCAAGGAGTTCGTCCCCTCGTCGGCGGCGGTCTCGTCGCCGTCCAGGAAGGCGCTGTCGGCGGACGCGCCGGTGTTCGACTACAACTCGATCGGAGGCTGGAACGGGGGCGGCAAGGAATCCGGCGCCGACGCCTACCAGCAGCGTCGGAGGAGGAATGGATACCTCAGTCCAGGAAGGAGGAGGATGAACGAGAGAGCAAGGCATGCAGACAGGGAAGACAGCATTCGGCGAACTGTTTATGTTTCTGATATTGACCATACTGTGACGGAGGAGAGACTTGCTGATA ]
[-] EMBL CB674594 [ GTTTGCTGATGAAGAGGGCGCAAGAACTGCACTTAACCTTGGTGGCACAATGCTTGGTTTCTACCCTGTTAGAGTCTTACCTTCAAAGACAGCTATATTGCCTGTGAATCCAAAGTTCCTTCCTAGGACGGAGGATGAGAAGGAAATGGTCATAAGAACTGTTTATTGTACAAACATAGATAAGAAGGTTACTCAATTAGATGTAAAGAATTTCTTTGAAGAACTTTGTGGTGAGGTCTCTCGTTTGAGACTTCTAGGGGATAATGTACATTCTACAAGGATTGCTTTTGTTGAGTTTGTCCATGCCGAGTGTGCCATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAGGGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTCGAACTGACCGCTTGAGCCAAGCTGGATTGTTTACGGGAAGATCGCTTAACCATCACCTATAGCCTTCCGCGATCCAGCGAATTGTGATGCTTTTTTCATTCACCCCTTTTGTCGAAAACTGTTGGAAGGAACTGGTTAAATCAGATCCTTGGGAGTCCGAGTCAGCATCTATGTCTGAGAGTTTATTCATCATGATGGAGAACAACCAATAGACTATCCGCCACTAGATTAATTTCTTTGGCTCCCGATTTTTTTTCCTTCTTTTTCTCAGTGCTACAACTGTTAAAACTGAATCGATATTTAACGTCTTTAGTCTTCACTTGAGGACAATCTCAGTGTCGTTTATAATTTCTCTAAAAAAAAGG]
consensusID : consensus_8073#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 825 fasta sequence
[GTACTGATCTGCTTTTACTTTGCATGCATGCACAACGGTAGACTGAAGATATCCTTTATTATNTAATCAATAGCATATCGCTGTTTTTGTTCTTGATGGTAGTTCTCTTAATGAATGGTTAGAATTTGTTTCCACAAGTAACAGATGGTTAGAATTTGTTTCTATCAGGGACAACCAAATTAAAGTGTTTTCCTTTATTCTTTATAATTGGTAGTATATTTCTCTCTCTCTTTTTTTCCCTAGTAGCTGTACTGTCATATTTTATATAGTGAATTAGCTGATCTGGCACAAACCTAATATGTTGTATAAAATATGTTCTCTTTGCAGGTCTCTCGTTTGAGACTTCTAGGGGATAATGTACATTCTACAAGGATTGCTTTTGTTGAGTTTGTCCATGCCGAGTGTGCCATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAGGGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTCGAACTGACCGCTTGAGCCAAGCTGGATTGTTTACGGGAAGATCGCTTAACCATCACCTATAGCCTTCCGCGATCCAGCGAATTGTGATGCTTTTTTCATTCACCCCTTTTGTCGAAAACTGTTGGAAGGAACTGGTTAAATCAGATCCTTGGGAGTCCGAGTCAGCATCTATGTCTGAGAGTTTATTCATCATGATGGAGAACAACCAATAGACTATCCGCCACTAGATTAATTTCTTTGGCTCCCGATTTTTTTTCCTTCTTTTTCTCAGTGCTACAACTGTTAAAACTGAATCGATATTTAACGTCTTTAGTCT]
[-] EMBL CB680103 [GTACTGATCTGCTTTTACTTTGCATGCATGCACAACGGTAGACTGAAGATATCCTTTATTATNTAATCAATAGCATATCGCTGTTTTTGTTCTTGATGGTAGTTCTCTTAATGAATGGTTAGAATTTGTTTCCACAAGTAACAGATGGTTAGAATTTGTTTCTATCAGGGACAACCAAATTAAAGTGTTTTCCTTTATTCTTTATAATTGGTAGTATATTTCTCTCTCTCTTTTTTTCCCTAGTAGCTGTACTGTCATATTTTATATAGTGAATTAGCTGATCTGGCACAAACCTAATATGTTGTATAAAATATGTTCTCTTTGCAGGTCTCTCGTTTGAGACTTCTAGGGGATAATGTACATTCTACAAGGATTGCTTTTGTTGAGTTTGTCCATGCCGAGTGTGCCATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAGGGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTCGAACTGACCGCTTGAGCCAAGCTGGATTGTTTACGGGAAGATCGCTTAACCATCACCTATAGCCTTCCGCGATCCAGCGAATTGTGATGCTTTTTTCATTCACCCCTTTTGTCGAAAACTGTTGGAAGGAACTGGTTAAATCAGATCCTTGGGAGTCCGAGTCAGCATCTATGTCTGAGAGTTTATTCATCATGATGGAGAACAACCAATAGACTATCCGCCACTAGATTAATTTCTTTGGCTCCCGATTTTTTTTCCTTCTTTTTCTCAGTGCTACAACTGTTAAAACTGAATCGATATTTAACGTCTTTAGTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8073#0 AAAAAAAAATGGCCAAAACCTTGTAAAAAGCAAAACCCACTCGCCACTAATCGACGCCAT 60
consensus_8073#1 ------------------------------------------------------------
consensus_8073#0 TGGCGAGAGCTCGAGCGCGCAACACCACCACGCGGTAGCCTCCCCCAACCTCCACCTCCT 120
consensus_8073#1 ------------------------------------------------------------
consensus_8073#0 CCTCCTCCGCCCGCCCCAGAGCCACCGGATGGCCTCGCTTCTGTAGGAGTAGAGGCGTAG 180
consensus_8073#1 ------------------------------------------------------------
consensus_8073#0 AGCCCAGCGCGAGGGAAGGCGGCGATTGATTTGATTTGACCAAGATTGGTCGGCCGTGCC 240
consensus_8073#1 ------------------------------------------------------------
consensus_8073#0 GTCTGGTCTGAGGAGCCCGGCTCTGGGGGATGGCGGCGGTGGCGGGGGGATCGCGCGCGG 300
consensus_8073#1 ------------------------------------------------------------
consensus_8073#0 CTCCACCGGCGGATTCCGCTGCCGTGGCGGCGGTGGCGAAGGAGGCGGAATACCAGAAGG 360
consensus_8073#1 ------------------------------------------------------------
consensus_8073#0 GCGTGCAGAAGCTGGTGGACCTGCTGTCCAAGCTGAACCCGGCTGCCAAGGAGTTCGTCC 420
consensus_8073#1 ------------------------------------------------------------
consensus_8073#0 CCTCGTCGGCGGCGGTCTCGTCGCCGTCCAGGAAGGCGCTGTCGGCGGACGCGCCGGTGT 480
consensus_8073#1 ------------------------------------------------------------
consensus_8073#0 TCGACTACAACTCGATCGGAGGCTGGAACGGGGGCGGCAAGGAATCCGGCGCCGACGCCT 540
consensus_8073#1 ------------------------------------------------------------
consensus_8073#0 ACCAGCAGCGTCGGAGGAGGAATGGATACCTCAGTCAAGGAAGGAGGAGGATGAACGAGA 600
consensus_8073#1 ------------------------------------------------------------
consensus_8073#0 GAGCAAGGCATGCAGACAGGGAAGACAGCATTCGGCGAACTGTTTATGTTTCTGATATTG 660
consensus_8073#1 -------------------------------GTACTGATCTGCTTTTACTTTGCAT---G 26
** *** ** * ** ** *
consensus_8073#0 ACCATACTGTGACGGAGGAGAGACTTGCTGATATATTTGCTAACTGTGGGCAAGTCGTTG 720
consensus_8073#1 CATGCACAACGGTAGACTGAAGATATCC---TTTATTATNTAATCAATAGCATATCGCTG 83
** * ** *** * * * **** *** *** *** **
consensus_8073#0 ACTGCAGAATCTGTGGTGATCCACACTCAGTTCTAAGGTTTGCATTCATTGAGTTTGCTG 780
consensus_8073#1 TTTTTGTTCTTGATGGTAGTTCTC--TTAATGA-ATGGTTAGAATTTGTT---TCCACAA 137
* * **** * * * * * * * **** * *** ** * *
consensus_8073#0 ATGAAGAGGGCGCAAGAACTGCACTTAACCTTGGTGGCACAATGCTTGGTTTCTACCCTG 840
consensus_8073#1 GTAACAGATGGTTAGAATTTGTTTCTATCAGGGACAACCAAATTAAAGTGTTTTCCTTTA 197
* * * * * ** ** * * * *** * ** * * *
consensus_8073#0 TTAGAGTCTTACCTTCAAAGACAGCTATATTGCCTGTGAATCCAAAGTTCCTTCCTAGGA 900
consensus_8073#1 TT----CTTTA---TAATTGGTAG-TATATT-TCTCTCTCTCT---TTTTTTCCCTAGTA 245
** *** * * * ** ****** ** * ** ** * ***** *
consensus_8073#0 CGGAGGATGAGAAGGAAATGGTCATAAGAACTGTTTATTGTACAAACATAGATAAGAAGG 960
consensus_8073#1 -----GCTGT-------ACTGTCATA----TTTTATATAGTGAATTAGCTGATCTGGCAC 289
* ** * ****** * * *** ** * *** *
consensus_8073#0 TTACTCAATTAGATGTAAAGAATTTCTTTGAAGAACTTTGTGGTGAGGTCTCTCGTTTGA 1020
consensus_8073#1 AAACCTAATATGTTGTATAAAATATGTTCT-----CTTTGC----AGGTCTCTCGTTTGA 340
** *** * **** * *** * ** ***** ***************
consensus_8073#0 GACTTCTAGGGGATAATGTACATTCTACAAGGATTGCTTTTGTTGAGTTTGTCCATGCCG 1080
consensus_8073#1 GACTTCTAGGGGATAATGTACATTCTACAAGGATTGCTTTTGTTGAGTTTGTCCATGCCG 400
************************************************************
consensus_8073#0 AGTGTGCCATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAGGG 1140
consensus_8073#1 AGTGTGCCATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAGGG 460
************************************************************
consensus_8073#0 TGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTCGAACTGACCGC 1200
consensus_8073#1 TGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTCGAACTGACCGC 520
************************************************************
consensus_8073#0 TTGAGCCAAGCTGGATTGTTTACGGGAAGATCGCTTAACCATCACCTATAGCCTTCCGCG 1260
consensus_8073#1 TTGAGCCAAGCTGGATTGTTTACGGGAAGATCGCTTAACCATCACCTATAGCCTTCCGCG 580
************************************************************
consensus_8073#0 ATCCAGCGAATTGTGATGCTTTTTTCATTCACCCCTTTTGTCGAAAACTGTTGGAAGGAA 1320
consensus_8073#1 ATCCAGCGAATTGTGATGCTTTTTTCATTCACCCCTTTTGTCGAAAACTGTTGGAAGGAA 640
************************************************************
consensus_8073#0 CTGGTTAAATCAGATCCTTGGGAGTCCGAGTCAGCATCTATGTCTGAGAGTTTATTCATC 1380
consensus_8073#1 CTGGTTAAATCAGATCCTTGGGAGTCCGAGTCAGCATCTATGTCTGAGAGTTTATTCATC 700
************************************************************
consensus_8073#0 ATGATGGAGAACAACCAATAGACTATCCGCCACTAGATTAATTTCTTTGGCTCCCGATTT 1440
consensus_8073#1 ATGATGGAGAACAACCAATAGACTATCCGCCACTAGATTAATTTCTTTGGCTCCCGATTT 760
************************************************************
consensus_8073#0 TTTTTCCTTCTTTTTCTCAGTGCTACAACTGTTAAAACTGAATCGATATTTAACGTCTTT 1500
consensus_8073#1 TTTTTCCTTCTTTTTCTCAGTGCTACAACTGTTAAAACTGAATCGATATTTAACGTCTTT 820
************************************************************
consensus_8073#0 AGTCTTCACTTGAGGACAATCTCAGTGTCGTTTATAATTTCTCTAAAAAAAAGG 1554
consensus_8073#1 AGTCT------------------------------------------------- 825
*****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||