cluster # 8188

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8188 cluster # 8188 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8188#0 length = 888 sequences # 4

consensus_8188#1 length = 327 sequences # 1

consensusID : consensus_8188#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 888
fasta sequence

                              [GAGGGAAGAGAGATGGGAGAGAACGCGAGAGCACGGGCAAAACTAGGGTTTCGGGTTGTCTCGCGGAGGCGGAGAGGCCGCAATCCCTCGTGCTCTCCGATCCTCCGGAGCCCCCGCCGGCCACGGGGAGCTCGCCGATCCGATCAACCGGGGTTCCGGCCTCCGGCCCCGCTTCGGCGGGAGGTTTACTCGTATCCGCTTCCCCTACCGTCTCGTCTTTGCATTTCCGCTCGC-TTCGATTTCGCCGTGGCTTGATGCCTCTGATCTCTCTCGTTTTGCTTGGATTTTGCCGTTGGCCCGATGATGATTGCGATTTAGACCCTCGCGAATCGATCGATTGGTTGGTTGGTTGATGGATGGATAGATAGATCGGCTCGGATTTGAGGCTCGCCCTTTGCATCTGCAAGCGGGTTGAGGTCCCGAGAATGGCTAGTACGGCGTTGGCTCCTCGATGATCTGGGCGCTGAAACATGCTGGGGGGGTCGGAGAGGCACTGACATGTGGGCCCGCCCACGCGGCAGGAACATGGTTTACTGCTGCTTCTGCTATACTATAAAACCTGCTCTTTTTCTTTCTTTTTTCTCCTCTTCCTCCTCCTCCTCCTCCTCTCTTGCCACCGCTGCGGCGGGTCGTCGTCGTCGTCGTACATCATCATCATCGTCCTCTTCTGCCGTACCCTTGAGACATGCTCCAGTGCCAGCGTCGAGGGCCGCCGCATTAGCCTAAGATGGAAAACGAAGTTGTGAAATCTGAGGGCCAATGAGTAAT--AAAC--TAAAT-ATACAATAAATATCAGAACACAACAAAAAATGAATAAGAGATCATTACACAAAATATAAAAATTAAAAACTCATGACAACAACAAATGAAAAATAACAAAAAACTTAAAAA]

[+] EMBL AK106328             [GAGGGAAGAGAGATGGGAGAGAACGCGAGAGCACGGGCAAAACTAGGGTTTCGGGTTGTCTCGCGGAGGCGGAGAGGCCGCAATCCCTCGTGCTCTCCGATCCTCCGGAGCCCCCGCCGGCCACGGGGAGCTCGCCGATCCGATCAACCGGGGTTCCGGCCTCCGGCCCCGCTTCGGCGGGAGGTTTACTCGTATCCGCTTCCCCTACCGTCTCGTCTTTGCATTTCCGCTCGC TTCGATTTCGCCGTGGCTTGATGCCTCTGATCTCTCTCGTTTTGCTTGGATTTTGCCGTTGGCCCGATGATGATTGCGATTTAGACCCTCGCGAATCGATCGATTGGTTGGTTGGTTGATGGATGGATAGATAGATCGGCTCGGATTTGAGGCTCGCCCTTTGCATCTGCAAGCGGGTTGAGGTCCCGAGAATGGCTAGTACGGCGTTGGCTCCTCGATGATCTGGGCGCTGAAACATGCTGGGGGGGTCGGAGAGGCACTGACATGTGGGCCCGCCCACGCGGCAGGAACATGGTTTACTGCTGCTTCTGCTATACTATAAAACCTGCTCTTTTTCTTTCTTTTTTCTCCTCTTCCTCCTCCTCCTCCTCCTCTCTTGCCACCGCTGCGGCGGGTCGTCGTCGTCGTCGTACATCATCATCATCGTCCTCTTCTGCCGTACCCTTGAGACATGCTCCAGTGCCAGCGTCGAGGGCCGCCGCATTAGCCTAAGATGGAAAACGAAGTTGTGAAATCTGAGGGCCAATGAGTAAT  AAAC  TAAAT ATACAATAAATATCAGAACACAACAAAAAAT                                                                                ]
[+] EMBL C27912               [                                  GGGCAAAACTAGGGTTTCGGGTTGTTTCGCGGAGGCGGAGAGGCCGCAATCCCTCGTGCTCTCCGATCCTCCGGAGCCCCCGCCGGCCACGGGGAGCTCGCCGATCCGATCAACCGGGGTTCCGGCCTCCGG CCCGCTTCGGCGGGAGGTTTACTCGTATCCGCTTCCCCTACCGTNTCGTCTTTGCATTTNCGCTCGC TTCGATTTCGCCGTGGCTTGATGCCTCTAATCTCTCTCGTTTTGCTTNGATTTTNCCGTTGGGCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU069661             [                                                                                                                                             GATCAACCGGGGTTCCGGCCTCCGGCCCCGCTTCGGCGGGAGGTTTACTCGTATCCGCTTCCCCTACCGTCTCGTCTTTGCATTTCCGCTCGC TTCGATTTCGCCGTGGCTTGATGCCTCTGATCTCTCTCGTTTTGCTTGGATTTTGCCGTTGGCCCGATGATGATTGCGATTTAGACCCTCGCGAATCGATCGATTGGTTGGTTGGTTGATGGATGGATAGATAGATCGGCTCGGATTTGAGGCTCGCCCTTTGCATCTGCAAGCGGGTTGAGGTCCCGAGAATGGCTAGTACGGCGTTGGCTCCTCGATGATCTGGGCGCTGAAACATGCTGGGGGGGTCGGAGAGGCACTGACATGTGGGCCCGCCCACGCGGCAGGAACATGGTTTACTGCTGCTTCT                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU097574             [                                                                                                                                                                                                         CCCCTACCGTCTCGTCTTTGCATTTCCGCTCGCTTTCGATTTCGCCGTGGCTTGATGCCTCTGATCTCTCTCGTTTTGCTTGGATTTTGCCGTTGGCCCGATGATGATTGCGATTTAGACCCTCGCGAATCGATCGATTGGTTGGTTGGTTGATGGATGGATAGATAGATCGGCTCGGATTTGAGGCTCGCCCTTTGCATCTGCAAGCGGGTTGAGGTCCCGAGAATGGCTAGTACGGCGTTGGCTCCTCGATGATCTGGGCGCTGAAACATGCTGGGGGGGTCGGAGAGGCACTGACATGTGGGCCCGCCCACGCGGCAGGAACATGGTTTACTGCTGCTTCTGCTATACTATAAAACCTGCTCTTTTTCTTTCTTTTTTCTCCTCTTCCTCCTCCTCCTCCTCCTCTCTTGCCACCGCTGCGGCGGGTCGTCGTCGTCGTCGTGCATCATCATCATCGTCCTCTTCTGCCGTACCCTTGAGACATGCTCCAGTGCCAGCGTCGAGGGCCGCCGCATTAGCCTAAGATGGAAAACGAAGTTGTGAAATCTGAGGGCCAATTGGTAATACAAACAATTACTGAGACAATGAA A CA AAAACAA AAAAAATGAATAAGAGATCATTACACAAAATATAAAAATTAAAAACTCATGACAACAACAAATGAAAAATAACAAAAAACTTAAAAA]




>consensus_8188#0
GAGGGAAGAGAGATGGGAGAGAACGCGAGAGCACGGGCAAAACTAGGGTTTCGGGTTGTC
TCGCGGAGGCGGAGAGGCCGCAATCCCTCGTGCTCTCCGATCCTCCGGAGCCCCCGCCGG
CCACGGGGAGCTCGCCGATCCGATCAACCGGGGTTCCGGCCTCCGGCCCCGCTTCGGCGG
GAGGTTTACTCGTATCCGCTTCCCCTACCGTCTCGTCTTTGCATTTCCGCTCGCTTCGAT
TTCGCCGTGGCTTGATGCCTCTGATCTCTCTCGTTTTGCTTGGATTTTGCCGTTGGCCCG
ATGATGATTGCGATTTAGACCCTCGCGAATCGATCGATTGGTTGGTTGGTTGATGGATGG
ATAGATAGATCGGCTCGGATTTGAGGCTCGCCCTTTGCATCTGCAAGCGGGTTGAGGTCC
CGAGAATGGCTAGTACGGCGTTGGCTCCTCGATGATCTGGGCGCTGAAACATGCTGGGGG
GGTCGGAGAGGCACTGACATGTGGGCCCGCCCACGCGGCAGGAACATGGTTTACTGCTGC
TTCTGCTATACTATAAAACCTGCTCTTTTTCTTTCTTTTTTCTCCTCTTCCTCCTCCTCC
TCCTCCTCTCTTGCCACCGCTGCGGCGGGTCGTCGTCGTCGTCGTACATCATCATCATCG
TCCTCTTCTGCCGTACCCTTGAGACATGCTCCAGTGCCAGCGTCGAGGGCCGCCGCATTA
GCCTAAGATGGAAAACGAAGTTGTGAAATCTGAGGGCCAATGAGTAATAAACTAAATATA
CAATAAATATCAGAACACAACAAAAAATGAATAAGAGATCATTACACAAAATATAAAAAT
TAAAAACTCATGACAACAACAAATGAAAAATAACAAAAAACTTAAAAA

consensusID : consensus_8188#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 327
fasta sequence

                              [AACATGGTTTACTGCTGCTTNTGCTATACTATAAAACCTGCTCTTTTTCTTTCTTTTTTNTCCTCTTCCTCCTCCTCCTCCTCCTNTNTTGCCACCGCTGCGGCGGGTCGTCGTCGTCGTCGTGCATCATCATCATCGTCCTCTTNTGCCGTACCCTTNAGACATGCTCCAGTGCCAGCGTCGAGGGCCGCCGCATTAGCCTAAGATGGAAAACGAAGTTGTGAAATTTGAGGGCCAATTGGTAATACAGNCAAATAGGCAAAATNAAATAACAAAAGAAAAAAAAAACCGNCATAAAAAAAAAAAAAAAAAAAAAAATCAAAAAAA]

[+] EMBL AU182174             [AACATGGTTTACTGCTGCTTNTGCTATACTATAAAACCTGCTCTTTTTCTTTCTTTTTTNTCCTCTTCCTCCTCCTCCTCCTCCTNTNTTGCCACCGCTGCGGCGGGTCGTCGTCGTCGTCGTGCATCATCATCATCGTCCTCTTNTGCCGTACCCTTNAGACATGCTCCAGTGCCAGCGTCGAGGGCCGCCGCATTAGCCTAAGATGGAAAACGAAGTTGTGAAATTTGAGGGCCAATTGGTAATACAGNCAAATAGGCAAAATNAAATAACAAAAGAAAAAAAAAACCGNCATAAAAAAAAAAAAAAAAAAAAAAATCAAAAAAA]




>consensus_8188#1
AACATGGTTTACTGCTGCTTNTGCTATACTATAAAACCTGCTCTTTTTCTTTCTTTTTTN
TCCTCTTCCTCCTCCTCCTCCTCCTNTNTTGCCACCGCTGCGGCGGGTCGTCGTCGTCGT
CGTGCATCATCATCATCGTCCTCTTNTGCCGTACCCTTNAGACATGCTCCAGTGCCAGCG
TCGAGGGCCGCCGCATTAGCCTAAGATGGAAAACGAAGTTGTGAAATTTGAGGGCCAATT
GGTAATACAGNCAAATAGGCAAAATNAAATAACAAAAGAAAAAAAAAACCGNCATAAAAA
AAAAAAAAAAAAAAAAAATCAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8188#0      GAGGGAAGAGAGATGGGAGAGAACGCGAGAGCACGGGCAAAACTAGGGTTTCGGGTTGTC 60
consensus_8188#1      ------------------------------------------------------------
                                                                                  

consensus_8188#0      TCGCGGAGGCGGAGAGGCCGCAATCCCTCGTGCTCTCCGATCCTCCGGAGCCCCCGCCGG 120
consensus_8188#1      ------------------------------------------------------------
                                                                                  

consensus_8188#0      CCACGGGGAGCTCGCCGATCCGATCAACCGGGGTTCCGGCCTCCGGCCCCGCTTCGGCGG 180
consensus_8188#1      ------------------------------------------------------------
                                                                                  

consensus_8188#0      GAGGTTTACTCGTATCCGCTTCCCCTACCGTCTCGTCTTTGCATTTCCGCTCGCTTCGAT 240
consensus_8188#1      ------------------------------------------------------------
                                                                                  

consensus_8188#0      TTCGCCGTGGCTTGATGCCTCTGATCTCTCTCGTTTTGCTTGGATTTTGCCGTTGGCCCG 300
consensus_8188#1      ------------------------------------------------------------
                                                                                  

consensus_8188#0      ATGATGATTGCGATTTAGACCCTCGCGAATCGATCGATTGGTTGGTTGGTTGATGGATGG 360
consensus_8188#1      ------------------------------------------------------------
                                                                                  

consensus_8188#0      ATAGATAGATCGGCTCGGATTTGAGGCTCGCCCTTTGCATCTGCAAGCGGGTTGAGGTCC 420
consensus_8188#1      ------------------------------------------------------------
                                                                                  

consensus_8188#0      CGAGAATGGCTAGTACGGCGTTGGCTCCTCGATGATCTGGGCGCTGAAACATGCTGGGGG 480
consensus_8188#1      ------------------------------------------------------------
                                                                                  

consensus_8188#0      GGTCGGAGAGGCACTGACATGTGGGCCCGCCCACGCGGCAGGAACATGGTTTACTGCTGC 540
consensus_8188#1      ------------------------------------------AACATGGTTTACTGCTGC 18
                                                                ******************

consensus_8188#0      TTCTGCTATACTATAAAACCTGCTCTTTTTCTTTCTTTTTTCTCCTCTTCCTCCTCCTCC 600
consensus_8188#1      TTNTGCTATACTATAAAACCTGCTCTTTTTCTTTCTTTTTTNTCCTCTTCCTCCTCCTCC 78
                      ** ************************************** ******************

consensus_8188#0      TCCTCCTCTCTTGCCACCGCTGCGGCGGGTCGTCGTCGTCGTCGTACATCATCATCATCG 660
consensus_8188#1      TCCTCCTNTNTTGCCACCGCTGCGGCGGGTCGTCGTCGTCGTCGTGCATCATCATCATCG 138
                      ******* * *********************************** **************

consensus_8188#0      TCCTCTTCTGCCGTACCCTTGAGACATGCTCCAGTGCCAGCGTCGAGGGCCGCCGCATTA 720
consensus_8188#1      TCCTCTTNTGCCGTACCCTTNAGACATGCTCCAGTGCCAGCGTCGAGGGCCGCCGCATTA 198
                      ******* ************ ***************************************

consensus_8188#0      GCCTAAGATGGAAAACGAAGTTGTGAAATCTGAGGGCCAATGAGTAATA-AACTAAATAT 779
consensus_8188#1      GCCTAAGATGGAAAACGAAGTTGTGAAATTTGAGGGCCAATTGGTAATACAGNCAAATAG 258
                      ***************************** ***********  ****** *   ***** 

consensus_8188#0      ACAATAAATATCAGAACACAACAAAAAATGAATAAGAGATCATTACACAAAATATAAAAA 839
consensus_8188#1      GCAA--AATNAAATAACAAAAGAAAAAAAAAACCG----NCATAAAAAAAAAAAAAAAAA 312
                       ***  ***   * **** ** ******  **        *** * * **** * *****

consensus_8188#0      TTAAAAACTCATGACAACAACAAATGAAAAATAACAAAAAACTTAAAAA 888
consensus_8188#1      --AAAAAATCAAAAAAA-------------------------------- 327
                        ***** ***  * **