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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8206#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1171 fasta sequence
[CTGTTGAACTTGACTCTNAGNCCGACTTTGTNAAATGACTTGANANGGTGTANGATAAGTGGGAACCCTCGGNCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGAANCGGGGCCTGGCCCCTCCTTTTGGCTCTAAACGCCCGAGTCCCTCGGGCCGAACCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGNGGCGGNACATCTGTTNAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAACTTAATAGTACTCATTTGGCTCCAGAGGGGCAGGAGCGACCAAAAATGGGCTTCGTCACGGCGGCGGCCGACGCGGTGGTGGCGCTGCTCTCCTTGACCATGGCGGTGGCGGCGCCGCTGTTCGACGCCCAGGTCGTCCTCCCTCGCGGCCTCTACCCGGCGCCGCTCGTCGGCATCCACCGGTGGTTCGCCGCCGAGTTCGGCCACTACCTCGTCGCCGACCCGCCGCCCTTCTTCCGCGGCCTCGTTTGGCTCGACCTCGCCTTCCTCTGGCCGGTCTGCGTCGCCAACCTCTACGGCATCCTCGCGCGCCGCCCCTGGTCCGCCGCCACCTCCATCATGGCGGGCGTCTACGTGCTCACCTACATGTCTGCAATCTTCGGAGAGATGCTGGGCTCAGGAAGAACAACACCGAAGCTGATTCAGCTGTACGTTCCATTCGCTCTGGCTGCTGTAACTGCAGTTCTGCGTGGTTTCTGCTCATGCTCAGCACAGGCTACTGCTGTTGCATCTCATGCCCCAACTGCTCGGAAGAAAAGGCTCTAGATCAGATGCCATCCGACGGGAGCGGCAGCCATCAGTTATGGTGTTGGCACCCAATTGCCTATTGGTGACCTTAAAGATAGTTGGACCATACATGAGGGCAAACAAAGTAATCTCTCGTTTTAAGTTGTCATTTTATTTGTTTTTTTTTCAAATCGATGTATTATGATTCAATGTTAAAGAGTTACTACATTTGCCTCAAGCAGCTTACAAAGTAATCTCTT]
[-] EMBL AU181113 [CTGTTGAACTTGACTCTNAGNCCGACTTTGTNAAATGACTTGANANGGTGTANGATAAGTGGGAACCCTCGGNCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGAANCGGGGCCTGGCCCCTCCTTTTGGCTCTAAACGCCCGAGTCCCTCGGGCCGAACCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGNGGCGGNACATCTGTTNAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTGATT ]
[-] EMBL AU161529 [ TGAACTTNACTCT AGTCCGACTTTGTAAAATGACTTGACAN GTGTANGATAAGTGNGANCCCTCGGNCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGAANCGGGGCCTGGCCCCTCCTTTTGGCTCTAAACGCCCGAGTCCCTCGGGCCGANCCGGGCGGAAGACATTGTCAGGTGGNGAGTTTGGCTGNGGCGGNACATCTGTTNAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAANANGGTAAAAGCTCGTTTGATTCTGATTTCC ]
[+] EMBL AK108338 [ TTATTCCGTGAGTCGGAAGCGGGGCCTGGCCCCTCCTTTTGGCTCT AAGGCCCGAGTCCCTCGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAACTTAATAGTACTCATTTGGCTCCAGAGGGGCAGGAGCGACCAAAAATGGGCTTCGTCACGGCGGCGGCCGACGCGGTGGTGGCGCTGCTCTCCTTGACCATGGCGGTGGCGGCGCCGCTGTTCGACGCCCAGGTCGTCCTCCCTCGCGGCCTCTACCCGGCGCCGCTCGTCGGCATCCACCGGTGGTTCGCCGCCGAGTTCGGCCACTACCTCGTCGCCGACCCGCCGCCCTTCTTCCGCGGCCTCGTTTGGCTCGACCTCGCCTTCCTCTGGCCGGTCTGCGTCGCCAACCTCTACGGCATCCTCGCGCGCCGCCCCTGGTCCGCCGCCACCTCCATCATGGCGGGCGTCTACGTGCTCACCTACATGTCTGCAATCTTCGGAGAGATGCTGGGCTCAGGAAGAACAACACCGAAGCTGATTCAGCTGTACGTTCCATTCGCTCTGGCTGCTGTAACTGCAGTTCTGCGTGGTTTCTGCTCATGCTCAGCACAGGCTACTGCTGTTGCATCTCATGCCCCAACTGCTCGGAAGAAAAGGCTCTAGATCAGATGCCATCCGACGGGAGCGGCAGCCATCAGTTATGGTGTTGGCACCCAATTGCCTATTGGTGACCTTAAAGATAGTTGGACCATACATGAGGGCAAACAAAGTAATCTCTCGTTTTAAGTTGTCATTTTATTTGTTTTTTTTTCAAATCGATGTATTATGATTCAATGTTAAAGAGTTACTACATTTGCCTCAAGCAGCTTACAAAGTAATCTCTT]
consensusID : consensus_8206#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 652 fasta sequence
[CCAAAAATGGGCTTCGTCACGGCGGCGGCCGACGCGGTGGTGGCGCTGCTCTCCTTGACCATGGCGGTGGCGGCGCCGCTGTTCGACGCCCAGGTCGTCCTCCCTCGCGGCCTCTACCCGGCGCCGCTCGTCGGCATCCACCGGTGGTTCGCCGCCGAGTTCGGCCACTACCTCGTCGCCGACCCGCCGCCCTTCTTCCGCGGCCTCGTTTGGCTCGACCTCGCCTTCCTCTGGCCGGTCTGCGTCGCCAACCTCTACGGCATCCTCGCGCGCCGCCCCTGGTCCGCCGCCACCTCCATCATGGCGGGCGTCTACGTGCTCACCTACATGTCTGCAATCTTCGGAGAGATGCTGGGCTCAGGAAGAACAACACCGAAGCTGATTCAGCTGTACGTTCCATTCGCTCTGGCTGCTGTAACTGCAGTTCTGCGTGGTTTCTGCTCATGCTCAGCACAGGCTACTGCTGTTGCATCTCATGCCCCAACTGCTCGGAAGAAAAGGCTCTAGATCAGATGTAAGTTTACAACATATGTCCTAAAAGAGATCAGATGTAAGTATCACTAGATGCAAGATGCACACCCAAAAGAGAATTGATGCACACACTTGTACAGTTTACCAGTACCATTCACTATATTCCGATTCACTCGGATGT]
[+] EMBL AK108306 [CCAAAAATGGGCTTCGTCACGGCGGCGGCCGACGCGGTGGTGGCGCTGCTCTCCTTGACCATGGCGGTGGCGGCGCCGCTGTTCGACGCCCAGGTCGTCCTCCCTCGCGGCCTCTACCCGGCGCCGCTCGTCGGCATCCACCGGTGGTTCGCCGCCGAGTTCGGCCACTACCTCGTCGCCGACCCGCCGCCCTTCTTCCGCGGCCTCGTTTGGCTCGACCTCGCCTTCCTCTGGCCGGTCTGCGTCGCCAACCTCTACGGCATCCTCGCGCGCCGCCCCTGGTCCGCCGCCACCTCCATCATGGCGGGCGTCTACGTGCTCACCTACATGTCTGCAATCTTCGGAGAGATGCTGGGCTCAGGAAGAACAACACCGAAGCTGATTCAGCTGTACGTTCCATTCGCTCTGGCTGCTGTAACTGCAGTTCTGCGTGGTTTCTGCTCATGCTCAGCACAGGCTACTGCTGTTGCATCTCATGCCCCAACTGCTCGGAAGAAAAGGCTCTAGATCAGATGTAAGTTTACAACATATGTCCTAAAAGAGATCAGATGTAAGTATCACTAGATGCAAGATGCACACCCAAAAGAGAATTGATGCACACACTTGTACAGTTTACCAGTACCATTCACTATATTCCGATTCACTCGGATGT]
[+] EMBL AU163233 [ TCACGGCGGCGGCCGACGCGGTGGTGGCGCTGCTCTCCTTGACCATGGCGGTGGCGGCGCCGCTGTTCGACGCCCAGGTCGTCCTCCCTCGCGGCCTCTACCCGGCGCCGCTCGTCGGCATCCACCGGTGGTTCGCCGCCGAGTTCGGCCACTACCTCGTCGNCGACCCGGCGNCCTTCTTCCGCGGCCTCGTTTGGCTCGACCTCGTCTTCCTCTGGCCGGTCTGCGTCGCaa ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8206#0 CTGTTGAACTTGACTCTNAGNCCGACTTTGTNAAATGACTTGANANGGTGTANGATAAGT 60
consensus_8206#1 ------------------------------------------------------------
consensus_8206#0 GGGAACCCTCGGNCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTG 120
consensus_8206#1 ------------------------------------------------------------
consensus_8206#0 AGTCGGAANCGGGGCCTGGCCCCTCCTTTTGGCTCTAAACGCCCGAGTCCCTCGGGCCGA 180
consensus_8206#1 ------------------------------------------------------------
consensus_8206#0 ACCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGNGGCGGNACATCTGTTNAAAGA 240
consensus_8206#1 ------------------------------------------------------------
consensus_8206#0 TAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGG 300
consensus_8206#1 ------------------------------------------------------------
consensus_8206#0 TAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTATC 360
consensus_8206#1 ------------------------------------------------------------
consensus_8206#0 GATCCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAACTTAATAGTACTCATT 420
consensus_8206#1 ------------------------------------------------------------
consensus_8206#0 TGGCTCCAGAGGGGCAGGAGCGACCAAAAATGGGCTTCGTCACGGCGGCGGCCGACGCGG 480
consensus_8206#1 -----------------------CCAAAAATGGGCTTCGTCACGGCGGCGGCCGACGCGG 37
*************************************
consensus_8206#0 TGGTGGCGCTGCTCTCCTTGACCATGGCGGTGGCGGCGCCGCTGTTCGACGCCCAGGTCG 540
consensus_8206#1 TGGTGGCGCTGCTCTCCTTGACCATGGCGGTGGCGGCGCCGCTGTTCGACGCCCAGGTCG 97
************************************************************
consensus_8206#0 TCCTCCCTCGCGGCCTCTACCCGGCGCCGCTCGTCGGCATCCACCGGTGGTTCGCCGCCG 600
consensus_8206#1 TCCTCCCTCGCGGCCTCTACCCGGCGCCGCTCGTCGGCATCCACCGGTGGTTCGCCGCCG 157
************************************************************
consensus_8206#0 AGTTCGGCCACTACCTCGTCGCCGACCCGCCGCCCTTCTTCCGCGGCCTCGTTTGGCTCG 660
consensus_8206#1 AGTTCGGCCACTACCTCGTCGCCGACCCGCCGCCCTTCTTCCGCGGCCTCGTTTGGCTCG 217
************************************************************
consensus_8206#0 ACCTCGCCTTCCTCTGGCCGGTCTGCGTCGCCAACCTCTACGGCATCCTCGCGCGCCGCC 720
consensus_8206#1 ACCTCGCCTTCCTCTGGCCGGTCTGCGTCGCCAACCTCTACGGCATCCTCGCGCGCCGCC 277
************************************************************
consensus_8206#0 CCTGGTCCGCCGCCACCTCCATCATGGCGGGCGTCTACGTGCTCACCTACATGTCTGCAA 780
consensus_8206#1 CCTGGTCCGCCGCCACCTCCATCATGGCGGGCGTCTACGTGCTCACCTACATGTCTGCAA 337
************************************************************
consensus_8206#0 TCTTCGGAGAGATGCTGGGCTCAGGAAGAACAACACCGAAGCTGATTCAGCTGTACGTTC 840
consensus_8206#1 TCTTCGGAGAGATGCTGGGCTCAGGAAGAACAACACCGAAGCTGATTCAGCTGTACGTTC 397
************************************************************
consensus_8206#0 CATTCGCTCTGGCTGCTGTAACTGCAGTTCTGCGTGGTTTCTGCTCATGCTCAGCACAGG 900
consensus_8206#1 CATTCGCTCTGGCTGCTGTAACTGCAGTTCTGCGTGGTTTCTGCTCATGCTCAGCACAGG 457
************************************************************
consensus_8206#0 CTACTGCTGTTGCATCTCATGCCCCAACTGCTCGGAAGAAAAGGCTCTAGATCAGATGCC 960
consensus_8206#1 CTACTGCTGTTGCATCTCATGCCCCAACTGCTCGGAAGAAAAGGCTCTAGATCAGATGTA 517
**********************************************************
consensus_8206#0 ATCCGACGGGA-GCGGCAGCCATCAGTTATGGTGTTGGCACC--CAATTGCCTATTGGTG 1017
consensus_8206#1 AGTTTACAACATATGTCCTAAAAGAGATCAGATGTAAGTATCACTAGATGCAAGATGCAC 577
* ** * * * * ** * * *** * * * * *** **
consensus_8206#0 ACCTTAAAGATAGTTGGACCATACATGAGGGCAAACAAAGTAATCTCTCGTTTTAAGTTG 1077
consensus_8206#1 ACCCAAAAGAGAATTGATGCACACACTTGTACAGTTTAC-CAGTACCATTCACTATATT- 635
*** ***** * *** ** *** * ** * * * * ** **
consensus_8206#0 TCATTTTATTTGTTTTTTTTTCAAATCGATGTATTATGATTCAATGTTAAAGAGTTACTA 1137
consensus_8206#1 CCGATTCACTCGGATGT------------------------------------------- 652
* ** * * * * *
consensus_8206#0 CATTTGCCTCAAGCAGCTTACAAAGTAATCTCTT 1171
consensus_8206#1 ----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||