cluster # 8247

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Oryza sativa
cluster # 8247 cluster # 8247 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8247#0 length = 524 sequences # 4

consensus_8247#1 length = 362 sequences # 1

consensusID : consensus_8247#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 524
fasta sequence

                              [TCCTTCGTGCGCTCTCGCCCCGGCCCGCCGGCGAGTTCCGCTCGACGGGTCCTTCCCGCGCCGCTGCTCCGCGTGTGCCGTCAAGCCGCTGCCCCCGCCGCGGCGCGGGGAGGAGGAGGAGGAG-GAGTTGTTGGT-G-CGGAGGTCCGGAGGAAGGTGGACGAGGACGCGCACGTGGTGATGGGGCGCGACGTGTTCGTGCTGTGGTTGCGCGCCGGGTTCGACGCCGCGTTCGCCATGGGGATCGTGCTCGTTCTCGACCGGATCACCGGCGACGAGCTCAACGGCGACCTGAGCGAGGACCTCGCCGTCGCCAGTTCGCCGGTGTAAAAGCTTGCGGTGATCGGAT--C-ATGGGTTCATGCTTAGAGATGTGTAAAATATGTATCATCTTGCAAATTCTTTTTTGTATGTTTTCTTGTCGAAGTTTGAATATTTTG-CCTTGTAAATTGAGCTTGTAGCTTTGAGCGAAATGCAAGTTACTCCTAATTACGTTAAAAAAAAAAAGTAGTAATAATTATAGTTAAAAA]

[+] EMBL BI807977             [TCCTTCGTGCGCTCTCGCCCCGGCCCGCCGGCGAGTTCCGCTCGACGGGTCCTTCCCGCGCCGCTGCTCCGCGTGTGCCGTCAAGCCGCTGCCCCCGCCGCGGCGCGGGGAGGAGGAGGAGGAG GAGTTGTTGGT G CGGAGGTCCGGAGGAAGGTGGACGAGGACGCGCACGTGGTGATGGGGCGCGACGTGTTCGTGCTGTGGTTGCGCGCCGGGTTCGACGCCGCGTTCGCCATGGGGATCGTGCTCGTTCTCGACCGGATCACCGGCGACGAGCTCAACGGCGACCTGAGCGAGGACCTCGCCGTCGCCAGTTCGCCGGTGTAAAAGCTTGCGGTGATCGGAT  C ATGGGTTCATGCTTAGAGATGTGTAAAATATGTATCATCTTGCAAATTCTTTTTTGTATGTTTTCTTGTCGAAGTTTGAATATTTTG CCTTGTAAATTGAGCTTGTAGCTTTGAGCGAAATGCAAGTTACTCCTAATTACGTTAAAAAAAAAA                        ]
[+] EMBL BI812096             [                                                                                                        cCGGGGAGGAGGAGGAGGAGAGAGTTGTT GT GCCGGA GTCCGGAGGAAGGTGGACGAGGACGCGCACGTGGTGAT GGGC CGACGTGTTCGT CTGT GTTGCGC CCGGGTTCGAC CCGCGTTC CCATGGGGATCGTGCTCGTTCTCGACCGGATCACCGGCGACGAGCTCAACGGCGACCTGAGCGAGGACCTCGCCGTCGCCAGTTCGCCGGTGTAAAAGCTTGCGGTGATCGGATCAC ATGGGTTCATGCTTAGAGATGTGTAAAATATGTATCATCTTGCAAATTCTTTTTTGTATGTTTTCTTGTCGAAGTTTGAATATTTTG CCTTGTAAATTGAGCTTGTAGCTTTGAGCGAAATGCAAGTTACTCCTAAAAA    AAAAAAAAAA                        ]
[+] EMBL BM420412             [                                                                                                                GAGGAGGAGGAG GAGGTGGTGGTGG CGGAGGTCCGGAGGAAGGTGGACGAGGACGCGCACGTGGTGATGGGGCGCGACGTGTTCGT CTGTGGTTGCGCGCCGGGTTCGACGCCGCGTTCGCCATGGGGATCGTGCTCGTTCTCGACCGGATCACCGGCGACGAGCTCAACGGCGACCTGAGCGAGGACCTCGCCGTCGCCAGTTCGCCGGTGTAAAAGCTTGCGGTGATCGGAT  CAATGGGTTCATGCTTAGAGATGTGTAAAATATGTATCATCTTGCAAATTCTTTTTTGTATGTTTTCTTGTCGAAGTTTGAATATTTTG CCTTGTAAATTGAGCTTGTAGCTTTGAGCGAAATGCAAGTTACTCCTAAaaaaaaa                                  ]
[+] EMBL BI810491             [                                                                                                                                                                             CGTGGTGATGGGGCGCGACGTGTTCGTGCTGTGGTTGCGCGCCGGGTTCGACGCCGCGTTCGCCATGGGGATCGTGCTCGTTCTCGACCGGATCACCGGCGACGAGCTCAACGGCGACCTGAGCGAGGACCTCGCCGTCGCCAGTTCGCCGGTGTAAAAGCTTGCGGTGATCGGAT  CAATGGGTTCATGCTTAGAGATGTGTAAAATATGTATCATCTTGCAAATTCTTTTTTGTATGTTTTCTTGTCGAAGTTTGAATATTTTGCCCTTGTAAATTGAGCTTGTAGCTTTGAGCGAAATGCAAGTTACTCCTAATTACGTTAGCCTTTGACAGTAGTAATAATTATAGTTAAAAA]




>consensus_8247#0
TCCTTCGTGCGCTCTCGCCCCGGCCCGCCGGCGAGTTCCGCTCGACGGGTCCTTCCCGCG
CCGCTGCTCCGCGTGTGCCGTCAAGCCGCTGCCCCCGCCGCGGCGCGGGGAGGAGGAGGA
GGAGGAGTTGTTGGTGCGGAGGTCCGGAGGAAGGTGGACGAGGACGCGCACGTGGTGATG
GGGCGCGACGTGTTCGTGCTGTGGTTGCGCGCCGGGTTCGACGCCGCGTTCGCCATGGGG
ATCGTGCTCGTTCTCGACCGGATCACCGGCGACGAGCTCAACGGCGACCTGAGCGAGGAC
CTCGCCGTCGCCAGTTCGCCGGTGTAAAAGCTTGCGGTGATCGGATCATGGGTTCATGCT
TAGAGATGTGTAAAATATGTATCATCTTGCAAATTCTTTTTTGTATGTTTTCTTGTCGAA
GTTTGAATATTTTGCCTTGTAAATTGAGCTTGTAGCTTTGAGCGAAATGCAAGTTACTCC
TAATTACGTTAAAAAAAAAAAGTAGTAATAATTATAGTTAAAAA

consensusID : consensus_8247#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 362
fasta sequence

                              [GGCGGCGGGGAGGAGGAGGAGGAGGAGTTGTTGNTGGCGGAGGTCCGGAGGAAGNTGGACGAGGACGCGCACNTGGTGATGGGGCGCGACGTGTTCGTGCTGTGGTTGCGCGCCGGGTTCGACGCCGCGTTCGCCATGGGGATCGTGCTCGTTCTCGACCGGATCACCGGCGACGAGNTCAACGGCGACCTGAGCGAGGACCTCGCCGTCGCCAGTTCGCCGGTGTAAAAGCTTTCGGTGATCGGATCAATGGGTTCATGNTTAGAGATGTGTAAAATATGTATCATCTTGCAAATTCTTTTTTGTATGTTTTCTTGTCGAAGTTTGAATATTTTGCCTTGTGNATAAAAAAAAAAAAAAAA]

[+] EMBL AU029398             [GGCGGCGGGGAGGAGGAGGAGGAGGAGTTGTTGNTGGCGGAGGTCCGGAGGAAGNTGGACGAGGACGCGCACNTGGTGATGGGGCGCGACGTGTTCGTGCTGTGGTTGCGCGCCGGGTTCGACGCCGCGTTCGCCATGGGGATCGTGCTCGTTCTCGACCGGATCACCGGCGACGAGNTCAACGGCGACCTGAGCGAGGACCTCGCCGTCGCCAGTTCGCCGGTGTAAAAGCTTTCGGTGATCGGATCAATGGGTTCATGNTTAGAGATGTGTAAAATATGTATCATCTTGCAAATTCTTTTTTGTATGTTTTCTTGTCGAAGTTTGAATATTTTGCCTTGTGNATAAAAAAAAAAAAAAAA]




>consensus_8247#1
GGCGGCGGGGAGGAGGAGGAGGAGGAGTTGTTGNTGGCGGAGGTCCGGAGGAAGNTGGAC
GAGGACGCGCACNTGGTGATGGGGCGCGACGTGTTCGTGCTGTGGTTGCGCGCCGGGTTC
GACGCCGCGTTCGCCATGGGGATCGTGCTCGTTCTCGACCGGATCACCGGCGACGAGNTC
AACGGCGACCTGAGCGAGGACCTCGCCGTCGCCAGTTCGCCGGTGTAAAAGCTTTCGGTG
ATCGGATCAATGGGTTCATGNTTAGAGATGTGTAAAATATGTATCATCTTGCAAATTCTT
TTTTGTATGTTTTCTTGTCGAAGTTTGAATATTTTGCCTTGTGNATAAAAAAAAAAAAAA
AA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8247#0      TCCTTCGTGCGCTCTCGCCCCGGCCCGCCGGCGAGTTCCGCTCGACGGGTCCTTCCCGCG 60
consensus_8247#1      ------------------------------------------------------------
                                                                                  

consensus_8247#0      CCGCTGCTCCGCGTGTGCCGTCAAGCCGCTGCCCCCGCCGCGGCG-CGGGGAGGAGGAGG 119
consensus_8247#1      -----------------------------------------GGCGGCGGGGAGGAGGAGG 19
                                                               **** **************

consensus_8247#0      AGGAGGAGTTGTTGGTG-CGGAGGTCCGGAGGAAGGTGGACGAGGACGCGCACGTGGTGA 178
consensus_8247#1      AGGAGGAGTTGTTGNTGGCGGAGGTCCGGAGGAAGNTGGACGAGGACGCGCACNTGGTGA 79
                      ************** ** ***************** ***************** ******

consensus_8247#0      TGGGGCGCGACGTGTTCGTGCTGTGGTTGCGCGCCGGGTTCGACGCCGCGTTCGCCATGG 238
consensus_8247#1      TGGGGCGCGACGTGTTCGTGCTGTGGTTGCGCGCCGGGTTCGACGCCGCGTTCGCCATGG 139
                      ************************************************************

consensus_8247#0      GGATCGTGCTCGTTCTCGACCGGATCACCGGCGACGAGCTCAACGGCGACCTGAGCGAGG 298
consensus_8247#1      GGATCGTGCTCGTTCTCGACCGGATCACCGGCGACGAGNTCAACGGCGACCTGAGCGAGG 199
                      ************************************** *********************

consensus_8247#0      ACCTCGCCGTCGCCAGTTCGCCGGTGTAAAAGCTTGCGGTGATCGGATCA-TGGGTTCAT 357
consensus_8247#1      ACCTCGCCGTCGCCAGTTCGCCGGTGTAAAAGCTTTCGGTGATCGGATCAATGGGTTCAT 259
                      *********************************** ************** *********

consensus_8247#0      GCTTAGAGATGTGTAAAATATGTATCATCTTGCAAATTCTTTTTTGTATGTTTTCTTGTC 417
consensus_8247#1      GNTTAGAGATGTGTAAAATATGTATCATCTTGCAAATTCTTTTTTGTATGTTTTCTTGTC 319
                      * **********************************************************

consensus_8247#0      GAAGTTTGAATATTTTGCCTTGTAAATTGAGCTTGTAGCTTTGAGCGAAATGCAAGTTAC 477
consensus_8247#1      GAAGTTTGAATATTTTGCCTTGTGNATAAAAAAAAAAAAAAAA----------------- 362
                      ***********************  **  *      *                       

consensus_8247#0      TCCTAATTACGTTAAAAAAAAAAAGTAGTAATAATTATAGTTAAAAA 524
consensus_8247#1      -----------------------------------------------