cluster # 8282

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Oryza sativa
cluster # 8282 cluster # 8282 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8282#0 length = 1195 sequences # 4

consensus_8282#1 length = 504 sequences # 1

consensusID : consensus_8282#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1195
fasta sequence

                              [CTCCGCCGCCGTTGAGCTCGAGCTCTAGTACTAGACCACGACCACCTCTGCTCCCATGGCCAGCTCCGTCGGCGACAGCACCGCTGCAGCTAACGGCGGCGGCGGCGCAGCAGCATCAGCGGCGCCACCGGAGGCTGCGGGGAAGGGGAGCGCCACCATATCCGTCACCGTCGTCCTCCTCGTGCTGCTGGTGGCCTCCGTCGCGGCGTTCCTGATGTCGCCGCAGCCGGGCGGCGGCAAGCCACCGGTGGAGGGAGTAAGCGGCGGCGGCGACAGCGACGGCACCCGCGGCGGCGGCGGCGGCTTAGAGGGTGTCAAGGGCGCCGAGCCGGTCGAGCAGGCGGTGGGCCCCGGCGCCGCCGCCATCCCCGGATTCAACAGCCGGCTCGACGCGTTCCGCGCGTGGGCCAAGCTCACCTGGATGAAGCTCCGGCGGCCACACTCCGGCGAGCCCCGGAGGTATGATGACGACGCGGGGAGCTCCGGCTCGGCGGCGGACGCGGCCAAGAGGAGCCTGGAGATGACCAAAGAGACGGTGGAGCAGGCGGCGGCGTCCGCGGCGAGAGCGGCGGGGAACGCCGTGGGGAAGGCCAGCGACAAGGTGAAGGGAGCTGCCTCGCCGGCGAAACGGGCACCCTCCGACGCGGAGCTCTGAGCACACAGGAGGACACGTTGCGCAAAACACCCTCATCGGCTCAGCCTTCTTCGCCCACTGTTTTTTTTTCCTCGAAGAAATTCTGCCAGTGTTAATTAACTAGCCTCTGTTCTATGATGTATGGATTGAACTGAATATTTGTATCCTGTGAATCTGATGTACATATTTCCACTGTACTATATACAGTAGTGTGATCCGTCCTGTTAGAATCGACGGAAATAAAAAATGTTCAGGCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCGTTCGTAAAAAAGGGGGAATTTGTTTAAACCCGGAGGAATTACCCCTTTAAGGGGGGGTAAATTTTAACCTGGGGGAAAAAGGGGCAAAACGGGTTCCCGGGGGAAAATGGTTTCCCCTTCAAATTCCCCCAAAAAATAAAACCGGGAACCATAAGGGGAAAACCCGGGGGGCCCAAAGGAGGGACCAACCCCCATT]

[+] EMBL AK108125             [CTCCGCCGCCGTTGAGCTCGAGCTCTAGTACTAGACCACGACCACCTCTGCTCCCATGGCCAGCTCCGTCGGCGACAGCACCGCTGCAGCTAACGGCGGCGGCGGCGCAGCAGCATCAGCGGCGCCACCGGAGGCTGCGGGGAAGGGGAGCGCCACCATATCCGTCACCGTCGTCCTCCTCGTGCTGCTGGTGGCCTCCGTCGCGGCGTTCCTGATGTCGCCGCAGCCGGGCGGCGGCAAGCCACCGGTGGAGGGAGTAAGCGGCGGCGGCGACAGCGACGGCACCCGCGGCGGCGGCGGCGGCTTAGAGGGTGTCAAGGGCGCCGAGCCGGTCGAGCAGGCGGTGGGCCCCGGCGCCGCCGCCATCCCCGGATTCAACAGCCGGCTCGACGCGTTCCGCGCGTGGGCCAAGCTCACCTGGATGAAGCTCCGGCGGCCACACTCCGGCGAGCCCCGGAGGTATGATGACGACGCGGGGAGCTCCGGCTCGGCGGCGGACGCGGCCAAGAGGAGCCTGGAGATGACCAAAGAGACGGTGGAGCAGGCGGCGGCGTCCGCGGCGAGAGCGGCGGGGAACGCCGTGGGGAAGGCCAGCGACAAGGTGAAGGGAGCTGCCTCGCCGGCGAAACGGGCACCCTCCGACGCGGAGCTCTGAGCACACAGGAGGACACGTTGCGCAAAACACCCTCATCGGCTCAGCCTTCTTCGCCCACTG TTTTTTTTCCTCGAAGAAATTCTGCCAGTGTTAATTAACTAGCCTCTGTTCTATGATGTATGGATTGAACTGAATATTTGTATCCTGTGAATCTGATGTACATATTTCCACTGTACTATATACAGTAGTGTGATCCGTCCTGTTAGAATCGACGGAAATAAAAAAT                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB668283             [                   GAGCTCCAGTACTAGACCACGACCACCTCTGCTCCCATGGCCAGCTCCGTCGGCGACAGCACCGCTGCAGCTAACGGCGGCGGCGGCGCAGCAGCATCAGCGGCGCCACCGGAGGCTGCGGGGAAGGGGAGCGCCACCATATCCGTCACCGTCGTCCTCCTCGTGCTGCTGGTGGCCTCCGTCGCGGCGTTCCTGATGTCGCCGCAGCCGGGCGGCGGCAAGCCACCGGTGGAGGGAGTAAGCGGCGGCGGCGACAGCGACGGCACCCGCGGCGGCGGCGGCGGCTTAGAGGGTGTCAAGGGCGCCGAGCCGGTCGAGCAGGCGGTGGGCCCCGGCGCCGCCGCCATCCCCGGATTCAACAGCCGGCTCGACGCGTTCCGCGCGTGGGCCAAGCTCACCTGGATGAAGCTCCGGCGGCCACACTCCGGCGAGCCCCGGAGGTATGATGACGACGCGGGGAGCTCCGGCTCGGCGGCGGACGCGGCCAAGAGGAGCCTGGAGATGACCAAAGAGACGGTGGAGCAGGCGGCGGCGTCCGCGGCGAGAGCGGCGGGGAACGCCGTGGGGAAGGCCAGCGACAAGGTGAAGGGAGCTGCCTCGCCGGCGAAACGGGCACCCTCCGACGCGGAGCTCTGAGCACACAGGAGGACACGTTGCGCAAAACACCCTCATCGGCTCAGCCTTCTTCGCCCACTGTTTTTTTTTCCTCGAAGAAATTCTGCCAGTGTTAATTAACTAGCCTCTGTTCTATGATGTATGGATTGAACTGAATATTTGTATCCTGTGAATCTGATGTACATATTTCCCCTGTACTATATACAGTAGTGT                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CB668284             [                                                                                                                                                                                                                                                                                                                                                                                  gngTTCAACAGCCGGCTCGACGCGTTCCGCGCGTGGGCCAAGCTCACCTGGATGAAGCTCCGGCGGCCACACTCCGGCGAGCCCCGGAGGTATGATGACGACGCGGGGAGCTCCGGCTCGGCGGCGGACGCGGCCAAGAGGAGCCTGGAGATGACCAAAGAGACGGTGGAGCAGGCGGCGGCGTCCGCGGCGAGAGCGGCGGGGAACGCCGTGGGGAAGGCCAGCGACAAGGTGAAGGGAGCTGCCTCGCCGGCGAAACGGGCACCCTCCGACGCGGAGCTCTGAGCACACAGGAGGACACGTTGCGCAAAACACCCTCATCGGCTCAGCCTTCTTCGCCCACTGTTTTTTTTTCCTCGAAGAAATTCTGCCAGTGTTAATTAACTAGCCTCTGTTCTATGATGTATGGATTGAACTGAATATTTGTATC                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CF310500             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CAGTGTTAATTAACTAGCCTCTGTTCTATGATGTATGGATTGAACTGAATATTTGTATCCTGTGAATCTGATGTACATATTTCCACTGTACTATATACAGTAGTGTGATCCGTCCTGTTAGAATCGACGGAAATAAAAAATGTTCAGGCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCGTTCGTAAAAAAGGGGGAATTTGTTTAAACCCGGAGGAATTACCCCTTTAAGGGGGGGTAAATTTTAACCTGGGGGAAAAAGGGGCAAAACGGGTTCCCGGGGGAAAATGGTTTCCCCTTCAAATTCCCCCAAAAAATAAAACCGGGAACCATAAGGGGAAAACCCGGGGGGCCCAAAGGAGGGACCAACCCCCATT]




>consensus_8282#0
CTCCGCCGCCGTTGAGCTCGAGCTCTAGTACTAGACCACGACCACCTCTGCTCCCATGGC
CAGCTCCGTCGGCGACAGCACCGCTGCAGCTAACGGCGGCGGCGGCGCAGCAGCATCAGC
GGCGCCACCGGAGGCTGCGGGGAAGGGGAGCGCCACCATATCCGTCACCGTCGTCCTCCT
CGTGCTGCTGGTGGCCTCCGTCGCGGCGTTCCTGATGTCGCCGCAGCCGGGCGGCGGCAA
GCCACCGGTGGAGGGAGTAAGCGGCGGCGGCGACAGCGACGGCACCCGCGGCGGCGGCGG
CGGCTTAGAGGGTGTCAAGGGCGCCGAGCCGGTCGAGCAGGCGGTGGGCCCCGGCGCCGC
CGCCATCCCCGGATTCAACAGCCGGCTCGACGCGTTCCGCGCGTGGGCCAAGCTCACCTG
GATGAAGCTCCGGCGGCCACACTCCGGCGAGCCCCGGAGGTATGATGACGACGCGGGGAG
CTCCGGCTCGGCGGCGGACGCGGCCAAGAGGAGCCTGGAGATGACCAAAGAGACGGTGGA
GCAGGCGGCGGCGTCCGCGGCGAGAGCGGCGGGGAACGCCGTGGGGAAGGCCAGCGACAA
GGTGAAGGGAGCTGCCTCGCCGGCGAAACGGGCACCCTCCGACGCGGAGCTCTGAGCACA
CAGGAGGACACGTTGCGCAAAACACCCTCATCGGCTCAGCCTTCTTCGCCCACTGTTTTT
TTTTCCTCGAAGAAATTCTGCCAGTGTTAATTAACTAGCCTCTGTTCTATGATGTATGGA
TTGAACTGAATATTTGTATCCTGTGAATCTGATGTACATATTTCCACTGTACTATATACA
GTAGTGTGATCCGTCCTGTTAGAATCGACGGAAATAAAAAATGTTCAGGCGGAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCGTTCGTAAAAAAGGGGGAATTT
GTTTAAACCCGGAGGAATTACCCCTTTAAGGGGGGGTAAATTTTAACCTGGGGGAAAAAG
GGGCAAAACGGGTTCCCGGGGGAAAATGGTTTCCCCTTCAAATTCCCCCAAAAAATAAAA
CCGGGAACCATAAGGGGAAAACCCGGGGGGCCCAAAGGAGGGACCAACCCCCATT

consensusID : consensus_8282#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 504
fasta sequence

                              [ACACTCGCGGCGAGCCCCGGAGGTATGATGACGACCGGGGAGCTCCGGCTCGGCGGCGACGCGGCCAAGAGGAGCCTGGAGATGACCCAAGAGACGGTGGAGCAGCGGCGGCGTCCGCGGCGAGAGCGTCGGGGAACCCCGTGGGGAAGGCCAGCGACAAGGTGTAAGGGAGCTGCCTCGCCGGCGAAACGGGCACCCTCCGACGCGGAGCTCTGAGCTACTACAGGTAGGACACGTTGCGCCAAGAACACCCTCATGCGGCTGCAGCCTTGCTTCGGCCCCGCTGGTGTGTGTTGTTTGTTCCTCCGAGAGAAATTGCGGCCAGTGGTGTGAATTGAACTGACGCCTCTGGTTCTATGGATGGTATGGGATTGGAACTGAATGATTTGGTATGCCTGGTGAATCTGGATGGTACATATGTTCCCCTGTACTATATCCCGTATGTGATCCGTCCTTTAGAATCGACGGAAATAAAAAATGTTCAGCCAGATTCCAGTTAAAAAA]

[+] EMBL BI802482             [ACACTCGCGGCGAGCCCCGGAGGTATGATGACGACCGGGGAGCTCCGGCTCGGCGGCGACGCGGCCAAGAGGAGCCTGGAGATGACCCAAGAGACGGTGGAGCAGCGGCGGCGTCCGCGGCGAGAGCGTCGGGGAACCCCGTGGGGAAGGCCAGCGACAAGGTGTAAGGGAGCTGCCTCGCCGGCGAAACGGGCACCCTCCGACGCGGAGCTCTGAGCTACTACAGGTAGGACACGTTGCGCCAAGAACACCCTCATGCGGCTGCAGCCTTGCTTCGGCCCCGCTGGTGTGTGTTGTTTGTTCCTCCGAGAGAAATTGCGGCCAGTGGTGTGAATTGAACTGACGCCTCTGGTTCTATGGATGGTATGGGATTGGAACTGAATGATTTGGTATGCCTGGTGAATCTGGATGGTACATATGTTCCCCTGTACTATATCCCGTATGTGATCCGTCCTTTAGAATCGACGGAAATAAAAAATGTTCAGCCAGATTCCAGTTAAAAAA]




>consensus_8282#1
ACACTCGCGGCGAGCCCCGGAGGTATGATGACGACCGGGGAGCTCCGGCTCGGCGGCGAC
GCGGCCAAGAGGAGCCTGGAGATGACCCAAGAGACGGTGGAGCAGCGGCGGCGTCCGCGG
CGAGAGCGTCGGGGAACCCCGTGGGGAAGGCCAGCGACAAGGTGTAAGGGAGCTGCCTCG
CCGGCGAAACGGGCACCCTCCGACGCGGAGCTCTGAGCTACTACAGGTAGGACACGTTGC
GCCAAGAACACCCTCATGCGGCTGCAGCCTTGCTTCGGCCCCGCTGGTGTGTGTTGTTTG
TTCCTCCGAGAGAAATTGCGGCCAGTGGTGTGAATTGAACTGACGCCTCTGGTTCTATGG
ATGGTATGGGATTGGAACTGAATGATTTGGTATGCCTGGTGAATCTGGATGGTACATATG
TTCCCCTGTACTATATCCCGTATGTGATCCGTCCTTTAGAATCGACGGAAATAAAAAATG
TTCAGCCAGATTCCAGTTAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8282#0      CTCCGCCGCCGTTGAGCTCGAGCTCTAGTACTAGACCACGACCACCTCTGCTCCCATGGC 60
consensus_8282#1      ------------------------------------------------------------
                                                                                  

consensus_8282#0      CAGCTCCGTCGGCGACAGCACCGCTGCAGCTAACGGCGGCGGCGGCGCAGCAGCATCAGC 120
consensus_8282#1      ------------------------------------------------------------
                                                                                  

consensus_8282#0      GGCGCCACCGGAGGCTGCGGGGAAGGGGAGCGCCACCATATCCGTCACCGTCGTCCTCCT 180
consensus_8282#1      ------------------------------------------------------------
                                                                                  

consensus_8282#0      CGTGCTGCTGGTGGCCTCCGTCGCGGCGTTCCTGATGTCGCCGCAGCCGGGCGGCGGCAA 240
consensus_8282#1      ------------------------------------------------------------
                                                                                  

consensus_8282#0      GCCACCGGTGGAGGGAGTAAGCGGCGGCGGCGACAGCGACGGCACCCGCGGCGGCGGCGG 300
consensus_8282#1      ------------------------------------------------------------
                                                                                  

consensus_8282#0      CGGCTTAGAGGGTGTCAAGGGCGCCGAGCCGGTCGAGCAGGCGGTGGGCCCCGGCGCCGC 360
consensus_8282#1      ------------------------------------------------------------
                                                                                  

consensus_8282#0      CGCCATCCCCGGATTCAACAGCCGGCTCGACGCGTTCCGCGCGTGGGCCAAGCTCACCTG 420
consensus_8282#1      ------------------------------------------------------------
                                                                                  

consensus_8282#0      GATGAAGCTCCGGCGGCCACACTC-CGGCGAGCCCCGGAGGTATGATGACGACGCGGGGA 479
consensus_8282#1      ------------------ACACTCGCGGCGAGCCCCGGAGGTATGATGACGAC-CGGGGA 41
                                        ****** **************************** ******

consensus_8282#0      GCTCCGGCTCGGCGGCGGACGCGGCCAAGAGGAGCCTGGAGATGACCAAAGAGACGGTGG 539
consensus_8282#1      GCTCCGGCTCGGCGGCG-ACGCGGCCAAGAGGAGCCTGGAGATGACCCAAGAGACGGTGG 100
                      ***************** ***************************** ************

consensus_8282#0      AGCAGGCGGCGGCGTCCGCGGCGAGAGCGGCGGGGAACGCCGTGGGGAAGGCCAGCGACA 599
consensus_8282#1      AGCAG-CGGCGGCGTCCGCGGCGAGAGCGTCGGGGAACCCCGTGGGGAAGGCCAGCGACA 159
                      ***** *********************** ******** *********************

consensus_8282#0      AGGTG-AAGGGAGCTGCCTCGCCGGCGAAACGGGCACCCTCCGACGCGGAGCTCTGAGCA 658
consensus_8282#1      AGGTGTAAGGGAGCTGCCTCGCCGGCGAAACGGGCACCCTCCGACGCGGAGCTCTGAGCT 219
                      ***** ***************************************************** 

consensus_8282#0      --CACAGG-AGGACACGTTGCGC--AAAACACCCTCAT-CGGCT-CAGCCTT-CTTCGCC 710
consensus_8282#1      ACTACAGGTAGGACACGTTGCGCCAAGAACACCCTCATGCGGCTGCAGCCTTGCTTCGGC 279
                         ***** **************  * *********** ***** ******* ***** *

consensus_8282#0      CAC---------TGTTTTTTTTTCCTC--GAAGAAATT-CTGCCAGTGTT---AATT-AA 754
consensus_8282#1      CCCGCTGGTGTGTGTTGTTTGTTCCTCCGAGAGAAATTGCGGCCAGTGGTGTGAATTGAA 339
                      * *         **** *** ******    ******* * ******* *   **** **

consensus_8282#0      CTA--GCCTCTG-TTCTATGAT--GTATGGATT--GAACTGAAT-ATTTG---TATCCTG 803
consensus_8282#1      CTGACGCCTCTGGTTCTATGGATGGTATGGGATTGGAACTGAATGATTTGGTATGCCTGG 399
                      **   ******* *******    ******  *  ********* *****   *  *  *

consensus_8282#0      TGAATCTGAT--GTACATAT-TTCCACTGTACTATATACAGTAGTGTGATCCGTCCTGTT 860
consensus_8282#1      TGAATCTGGATGGTACATATGTTCCCCTGTACTATATCCCGTA-TGTGATCCGTCCT-TT 457
                      ********    ******** **** *********** * *** ************* **

consensus_8282#0      AGAATCGACGGAAATAAAAAATGTTCAGGCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA 920
consensus_8282#1      AGAATCGACGGAAATAAAAAATGTTCAGCCAGATTCCAGTTAAAAAA------------- 504
                      **************************** * **    *   ******             

consensus_8282#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 980
consensus_8282#1      ------------------------------------------------------------
                                                                                  

consensus_8282#0      AAAAACCCTTGTTTTCCCGTTCGTAAAAAAGGGGGAATTTGTTTAAACCCGGAGGAATTA 1040
consensus_8282#1      ------------------------------------------------------------
                                                                                  

consensus_8282#0      CCCCTTTAAGGGGGGGTAAATTTTAACCTGGGGGAAAAAGGGGCAAAACGGGTTCCCGGG 1100
consensus_8282#1      ------------------------------------------------------------
                                                                                  

consensus_8282#0      GGAAAATGGTTTCCCCTTCAAATTCCCCCAAAAAATAAAACCGGGAACCATAAGGGGAAA 1160
consensus_8282#1      ------------------------------------------------------------
                                                                                  

consensus_8282#0      ACCCGGGGGGCCCAAAGGAGGGACCAACCCCCATT 1195
consensus_8282#1      -----------------------------------