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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8310#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1299 fasta sequence
[ATCAATTCAAGGAAGTGGTGTCATAAATGGTAGGGGGCAAGAATGGTGGACCTATTCAGATCCAAATGACGACGACAATGATGATGTTGATGCTTACAATGTGGAGCTGGAGAAGATGCCACAGATTAAACCTACAGCATTGAGGTTTTATGGTAGTTCCAATGTCACAGTAACTGGTATCACCATTGTTAACAGCTCACAGTGCCATCTCAAGTTTGATAGCTGTCAAGGAGTAATGGTTCATGACCTGACCATCTCATCGCCTGAGAACAGTCCCAACACTGATGGAATACACCTGCAAAATTCCAAACAAGTCAGCATTCACCACTCTAACCTCGCTTGCGGCGATGATTGTGTTTCCATCCAGACAGGCTGCAGTGACATAAACATACATAATGTGAACTGTGGACCAGGGCATGGGATCAGCATTGGTGGTCTAGGAAGGTACAACACAAAAGCATGTGTATCCAATGTCACCGTAAGAGATGTCAACATGTTCAAAACAATGACTGGTGTCAGAATCAAAACTTGGCAGGGAGGTTCAGGGTTGGTTCAAGGCATAAGGTTCTCAAACATACAAGTGTCAGAAGTTCAAACACCTATCATAATAGACCAATTTTACTGTGACAGAACAACTTGCAGAAACCAAACATCAGCAGTGGCGGTTTTA-GGTGTTCAGTACGAGAATATCAGGGGGACCTTCACAATCAAGCCTGCCCATTTTGCATGCAGTGATAGCTCGCCTTGTTCAGAGATCACTCTTACTGGAATACAGCTCAAACCCCTGATAGTGCCACAGTATCACCTGTACAACCCATTCTGCTGGCAAGCCTTTGGAGAGTTGTCCACCCCCACCATCCCTCCCATATCCTGCTTGCAGATCGGCAAA-CCATCTGGGAACAACGTGATGTCAGATTATGATCTATGTTGAAACTCTCTGAATGAGTGGAAATGCTGTGATCCAGGAAATACTATACTCCTGGTCCTCATTGGTTAGGGTGGTCGTCGTGATTCTTCCGACCCCCTTTCTGCACAATCATCGTGTGGTGT-ATATATATACAGTTTATGCAAGGATAGTATATGGTTATCAGGACATGTACCAGCTTCCCTCTTGAAGTGAAATGTAGGAATTTGATAATGTAAGGGATAGTGTTCATGCATTGTTCTAGATGCATCATGCATACATACGAGGTAGTACTAGTCACTCTGCTATCAATTTCGGTAATGAAATGGGACCATTCCTCTCTTTCTCAAAAAAAAAGTACTATTAAGATGGATGAAACAGAAAAAAAAAAAAAA]
[+] EMBL AK108477 [ATCAATTCAAGGAAGTGGTGTCATAAATGGTAGGGGGCAAGAATGGTGGACCTATTCAGATCCAAATGACGACGACAATGATGATGTTGATGCTTACAATGTGGAGCTGGAGAAGATGCCACAGATTAAACCTACAGCATTGAGGTTTTATGGTAGTTCCAATGTCACAGTAACTGGTATCACCATTGTTAACAGCTCACAGTGCCATCTCAAGTTTGATAGCTGTCAAGGAGTAATGGTTCATGACCTGACCATCTCATCGCCTGAGAACAGTCCCAACACTGATGGAATACACCTGCAAAATTCCAAACAAGTCAGCATTCACCACTCTAACCTCGCTTGCGGCGATGATTGTGTTTCCATCCAGACAGGCTGCAGTGACATAAACATACATAATGTGAACTGTGGACCAGGGCATGGGATCAGCATTGGTGGTCTAGGAAGGTACAACACAAAAGCATGTGTATCCAATGTCACCGTAAGAGATGTCAACATGTTCAAAACAATGACTGGTGTCAGAATCAAAACTTGGCAGGGAGGTTCAGGGTTGGTTCAAGGCATAAGGTTCTCAAACATACAAGTGTCAGAAGTTCAAACACCTATCATAATAGACCAATTTTACTGTGACAGAACAACTTGCAGAAACCAAACATCAGCAGTGGCGGTTTTA GGTGTTCAGTACGAGAATATCAGGGGGACCTTCACAATCAAGCCTGCCCATTTTGCATGCAGTGATAGCTCGCCTTGTTCAGAGATCACTCTTACTGGAATACAGCTCAAACCCCTGATAGTGCCACAGTATCACCTGTACAACCCATTCTGCTGGCAAGCCTTTGGAGAGTTGTCCACCCCCACCATCCCTCCCATATCCTGCTTGCAGATCGGCAAA CCATCTGGGAACAACGTGATGTCAGATTATGATCTATGTTGAAACTCTCTGAATGAGTGGAAATGCTGTGATCCAGGAAATACTATACTCCTGGTCCTCATTGGTTAGGGTGGTCGTCGTGATTCTTCCGACCCCCTTTCTGCACAATCATCGTGTGGTGT ATATATATACAGTTTATGCAAGGATAGTATATGGTTATCAGGACATGTACCAGCTTCCCTCTTGAAGTGAAATGTA ]
[+] EMBL OSS14229A [ ACCTCGCTTG GGCGATGATTGTGTTTCCATCCAGACAGGCTGCAGTGACATAAACATACATAATGTGAACTGTGGACCAGGGCATGGGATCAGCATTGGTGGTCTAGGAAGGTACAACACAAAAGCATGTGTATCCAATGTCACCGTAAGAGATGTCAACATGTTCAAAACAATGACTGGTGTCAGAATCAAAACTTGGCAGGGAGGTTCAGGGTTGGTTCAAGGCATAAGGTTCTCAAACATACAAGTGTCAGAAGTTCAAACACCTATCATAATAGACCAATTTTACTGTGACAGAACAACTTGCAGAAACCAAACATCAGCAGTGGCGGTTTTAGGGTGTTCAGTACGAGAATATCAGGGGG NCTTCACAATCAAG CTGCCCATTTTGCATGCAGTGATAGCTCGCCTTGTTCAGAGATCA TTTTACTNGGATACAG ]
[+] EMBL AU096556 [ CATCCCTCCCATATCCTGCTTGCAGATCGGCAAANCCATCTGGGAACAACGTGATGTCAGATTATGATCTATGTTGAAACTCTCTGAATGAGTGGAAATGCTGTGATCCAGGAAATACTATACTCCTGGTCCTCATTGGTTAGGGTGGTCGTCGTGATTCTTCCGACCCCCTTTCTGCACAATCATCGTGTGGTGTNATATATATACAGTTTATGCAAGGATAGTATATGGTTATCAGGACATGTACCAGCTTCCCTCTTGAAGTGAAATGTAGGAATTTGATAATGTAAGGGATAGTGTTCATGCATTGTTCTAGATGCATCATGCATACATACGAGGTAGTACTAGTCACTCTGCTATCAATTTCGGTAATGAAATGGGACCATTCCTCTCTTTCTCAAAAAAAAAGTACTATTAAGATGGATGAAACAGAAAAAAAAAAAAAA]
consensusID : consensus_8310#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 686 fasta sequence
[TCCCCTCCTGTTGATTGCTCTCAACCGCATCAAATCTGCAACCAATCGGTCTAGCTAATAAGCGTGCGTGCGAGTGGTGTCCGACAGACACGCCTAATGCGGTCGACCTCTAGAGTCCACCTCACCTCGATTCTCCGGCCTCTCTAGCCTTCCCTCACGCGCCCGAACCCGCAGCCTTCTATGGGTCCTTCCACTCTCGAAAATTGTAGCCATTCTTTGCCCAACTCGTAGCTCATCCAACATAGCCGTGCGGGTGCCTGCACCGATCGCTCGCCTTCTCGAGGTGGCACTCGTGATGTCACGCAGCTCATGCCCCTGATAGTTCCCCAGTATCACCTGTACAACCCATTTTGCTGGCAAGCCTTTGGAGAGTTGTNCACCCCCACCATCCCTCCCATATCCTGCTTGCAGATCGGCAAACCATCTGGGAACAACGTGATGTCAGATTATGATCTATGTTGAAACTCTCTGAATGAGTGGAAATGCTGTGATCCAGGAAATACTATACTCCTGGTCCTCATTGGTTAGGGTGGTCGTCGTGATTCTTCCGACCCCCTTTTTGCACAATCATCGTGTGGTGTATATATATACAGTTTATGCAAGGATAGTATATGGTTATCAGGACATGTACCAGCTTCCCTCTTGAAGTGAAATGTAGAAATTTGATAATGTAAAAAAAAAAAAAA]
[-] EMBL CA763035 [TCCCCTCCTGTTGATTGCTCTCAACCGCATCAAATCTGCAACCAATCGGTCTAGCTAATAAGCGTGCGTGCGAGTGGTGTCCGACAGACACGCCTAATGCGGTCGACCTCTAGAGTCCACCTCACCTCGATTCTCCGGCCTCTCTAGCCTTCCCTCACGCGCCCGAACCCGCAGCCTTCTATGGGTCCTTCCACTCTCGAAAATTGTAGCCATTCTTTGCCCAACTCGTAGCTCATCCAACATAGCCGTGCGGGTGCCTGCACCGATCGCTCGCCTTCTCGAGGTGGCACTCGTGATGTCACGCAGCTCATGCCCCTGATAGTTCCCCAGTATCACCTGTACAACCCATTTTGCTGGCAAGCCTTTGGAGAGTTGTNCACCCCCACCATCCCTCCCATATCCTGCTTGCAGATCGGCAAACCATCTGGGAACAACGTGATGTCAGATTATGATCTATGTTGAAACTCTCTGAATGAGTGGAAATGCTGTGATCCAGGAAATACTATACTCCTGGTCCTCATTGGTTAGGGTGGTCGTCGTGATTCTTCCGACCCCCTTTTTGCACAATCATCGTGTGGTGTATATATATACAGTTTATGCAAGGATAGTATATGGTTATCAGGACATGTACCAGCTTCCCTCTTGAAGTGAAATGTAGAAATTTGATAATGTAAAAAAAAAAAAAA]
[-] EMBL CF308329 [ TCGGCAAACCATCTGGGAACAACGTGATGTCAGATTATGATCTATGTCGAAACTCTCTGAATGAGTGGAAATGCTGTGATCCAGGAAATACTATACTCCTGGTCCTCATTGGTTAGGGTGGTCGTCGTGATTCTTCCGACCCCCTTTCTGCACAATCATCGTGTGGTGTATATATATACAGTTTATGCAAGGATAGTATATGGTTATCAGGACATGTACCAGCTTCCCTCTTGAAGTGAAATGTAGGAATTTGATAATGTAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8310#0 ATCAATTCAAGGAAGTGGTGTCATAAATGGTAGGGGGCAAGAATGGTGGACCTATTCAGA 60
consensus_8310#1 ------------------------------------------------------------
consensus_8310#0 TCCAAATGACGACGACAATGATGATGTTGATGCTTACAATGTGGAGCTGGAGAAGATGCC 120
consensus_8310#1 ------------------------------------------------------------
consensus_8310#0 ACAGATTAAACCTACAGCATTGAGGTTTTATGGTAGTTCCAATGTCACAGTAACTGGTAT 180
consensus_8310#1 ------------------------------------------------------------
consensus_8310#0 CACCATTGTTAACAGCTCACAGTGCCATCTCAAGTTTGATAGCTGTCAAGGAGTAATGGT 240
consensus_8310#1 ------------------------------------------------------------
consensus_8310#0 TCATGACCTGACCATCTCATCGCCTGAGAACAGTCCCAACACTGATGGAATACACCTGCA 300
consensus_8310#1 ------------------------------------------------------------
consensus_8310#0 AAATTCCAAACAAGTCAGCATTCACCACTCTAACCTCGCTTGCGGCGATGATTGTGTTTC 360
consensus_8310#1 ------------------------------------------------------------
consensus_8310#0 CATCCAGACAGGCTGCAGTGACATAAACATACATAATGTGAACTGTGGACCAGGGCATGG 420
consensus_8310#1 ------------------------------------------------------------
consensus_8310#0 GATCAGCATTGGTGGTCTAGGAAGGTACAACACAAAAGCATGTGTATCCAATGTCACCGT 480
consensus_8310#1 --------------------------TCCCCTCCTGTTGAT-TGCTCTCAACCGCATCAA 33
* * * ** ** *** ** *
consensus_8310#0 AAGAGATGTCAACATGTTCAAAACAATGACTG-GTGTCAGAATCAAAACTTGGCAGGGAG 539
consensus_8310#1 ATCTGCAACCAAT-CGGTCTAGCTAATAAGCGTGCGTGCGAGT-GGTGTCCGACAGACAC 91
* * *** * ** * *** * * * ** ** * * *** *
consensus_8310#0 GTTCAGGGTTGGTTCAAGGCATAAGGTTCTCAAACATACAAGTGTCAGAAGTTCAAACAC 599
consensus_8310#1 GCCTAATGC--GGTCGACCTCTAGAGTCCACCTCACCTCGATTCTCCGGCCTCTCTAGCC 149
* * * * ** * ** ** * * * * * ** * * * *
consensus_8310#0 CTATCATAATAGACCAATTTTACTGTGACAGAACAACTTGCAGAAACCAAACATCAGCAG 659
consensus_8310#1 TTCCCTCACGCGCCCGAACCCGCAGC----------CTTCTATGGGTC--CTTCCACTCT 197
* * * * ** * * * *** * * **
consensus_8310#0 TGGCGGTTTTAGGTGTTCAGTACGAGAATATCAGGGGGACCTTCACAATCAAGCCTGCCC 719
consensus_8310#1 CGAAAATTGTAGCCATTCTTTGCCCAACTCGTAGCTCATCCAACATAGCCGTGCGGG--- 254
* ** *** *** * * * * ** ** ** * * ** *
consensus_8310#0 ATTTTGCATGCAGTGATAGCTCGCCTTGTTCAGAGATCACTCTTACTGGAATACAGCTCA 779
consensus_8310#1 ----TGCCTGCACCGATCGCTCGCCTTCTCGAGGTGGCACTCGTGATGTCACGCAGCTCA 310
*** **** *** ********* * ** ***** * ** * *******
consensus_8310#0 AACCCCTGATAGTGCCACAGTATCACCTGTACAACCCATTCTGCTGGCAAGCCTTTGGAG 839
consensus_8310#1 TGCCCCTGATAGTTCCCCAGTATCACCTGTACAACCCATTTTGCTGGCAAGCCTTTGGAG 370
*********** ** *********************** *******************
consensus_8310#0 AGTTGTCCACCCCCACCATCCCTCCCATATCCTGCTTGCAGATCGGCAAACCATCTGGGA 899
consensus_8310#1 AGTTGTNCACCCCCACCATCCCTCCCATATCCTGCTTGCAGATCGGCAAACCATCTGGGA 430
****** *****************************************************
consensus_8310#0 ACAACGTGATGTCAGATTATGATCTATGTTGAAACTCTCTGAATGAGTGGAAATGCTGTG 959
consensus_8310#1 ACAACGTGATGTCAGATTATGATCTATGTTGAAACTCTCTGAATGAGTGGAAATGCTGTG 490
************************************************************
consensus_8310#0 ATCCAGGAAATACTATACTCCTGGTCCTCATTGGTTAGGGTGGTCGTCGTGATTCTTCCG 1019
consensus_8310#1 ATCCAGGAAATACTATACTCCTGGTCCTCATTGGTTAGGGTGGTCGTCGTGATTCTTCCG 550
************************************************************
consensus_8310#0 ACCCCCTTTCTGCACAATCATCGTGTGGTGTATATATATACAGTTTATGCAAGGATAGTA 1079
consensus_8310#1 ACCCCCTTTTTGCACAATCATCGTGTGGTGTATATATATACAGTTTATGCAAGGATAGTA 610
********* **************************************************
consensus_8310#0 TATGGTTATCAGGACATGTACCAGCTTCCCTCTTGAAGTGAAATGTAGGAATTTGATAAT 1139
consensus_8310#1 TATGGTTATCAGGACATGTACCAGCTTCCCTCTTGAAGTGAAATGTAGAAATTTGATAAT 670
************************************************ ***********
consensus_8310#0 GTAAGGGATAGTGTTCATGCATTGTTCTAGATGCATCATGCATACATACGAGGTAGTACT 1199
consensus_8310#1 GTAAAAAAAAAAAAAA-------------------------------------------- 686
**** * *
consensus_8310#0 AGTCACTCTGCTATCAATTTCGGTAATGAAATGGGACCATTCCTCTCTTTCTCAAAAAAA 1259
consensus_8310#1 ------------------------------------------------------------
consensus_8310#0 AAGTACTATTAAGATGGATGAAACAGAAAAAAAAAAAAAA 1299
consensus_8310#1 ----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||