cluster # 8341

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Oryza sativa
cluster # 8341 cluster # 8341 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8341#0 length = 532 sequences # 3

consensus_8341#1 length = 383 sequences # 1
consensus_8341#2 length = 272 sequences # 1

consensusID : consensus_8341#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 532
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTNNTAAAACTTCAAACTGACCAACAGTTCATTATCCTCCATCACCGCATCACCATCTCATATAGCAATCATTCACAAAGGGGATGGCAAGAATTTATCATACAACAATATCATATCATTCACAAAAGGGGCACACTGGCTGACAGTTCGTCGTCCTCCATGATGAACCAGCTACAGGAGATGCAGGTGGAGGCGCCGCGCTCGCAGCCACCGGGGAGGCAGCGGAGGGTCTCGAAGAGGCACTCCACTGC--C-AGGTGTCCGGTGGGTGGGGATGGAGGAAGGCGGTATCTGCGCATCCCCGGCCTCGTGGAGGTCGGATCCGGCGGCTAACCCCGTCCGTGGTGGAAGTNAAGGAAGCATCCGTNGCNTTTGCGCCCGGAAGCCGGGGGAAGCNTCCGCNGAAGTTGAAGCATANGTTGCGGCCGCTACCCCGGCNGAAGCNGANGCCCGCTTGAAGCTCCCGCNNAAGCGCGNAAGTTGNAACNCNACNCNTCNGGCTCGCTCTNCCNAAT]

[-] EMBL CA755078             [TTTTTTTTTTTTTTTTTTTTTTNNTAAAACTTCAAACTGACCAACAGTTCATTATCCTCCATCACCGCATCACCATCTCATATAGCAATCATTCACAAAGGGGATGGCAAGAATTTATCATACAACAATATCATATCATTCACAAAAGGGGCACACTGGCTGACAGTTCGTCGTCCTCCATGATGAACCAGCTACAGGAGATGCAGGTGGAGGCGCCGCGCTCGCAGCCACCGGGGAGGCAGCGGAGGGTCTCGAAGAGGCACTCCACTGC  G AGGTGTCCGGTGGGTGGGGATGG                                                                                                                                                                                                                                             ]
[-] EMBL AU172816             [          TTTTTTTTTTTT  TAAAACTTCAAACTGACCAACAGTTCATTATCCTCCATCACCGCATCACCATCTCATATAGCAATCATTCACAAAGGGGATGGCAAGAATTTATCATACAACAATATCATATCATTCACAAAAGGGGCACACTGGCTGACAGTTCGTCGTCCTCCATGATGAACCAGCTACAGGAGATGCAGGTGGAGGCGCCGCGCTCGCAGCCACCGGGGAGGCAGCGGAGGGTCTCGAAGAGGCACTCCACTGCTGCGAGGTGTCCGGTGGGTGGGGATGGAGGAAGGCGGTATCTGCGCATCCCCGGCCTCGTGGAGGT                                                                                                                                                                                                      ]
[+] EMBL BE229807             [                            ACTTCAAACTGACCAACAGTTCATTATCCTCCATCACCGCATCACCATCTCATATAGCAATCATTCACAAAGGGGATGGCAAGAATTTATCATACAACAATATCATATCATTCACAAAAGGGGCACACTGGCTGACAGTTCGTCNTCCTCCATGATGAACCAGCTACAGGANATGCAGGTGGANGCGCCGCGCTCGCAGCCACCGGGGAAGCAGCGGAAGGTCTCNAAAAAGCACTCCACTGC  C AAGTGTCCGGTGGGTNGGGATGGAAGAA GCGGTATCTGCGCATCCCCGGCCTCNTGGAAGTCGGATCCGGCGGCTAACCCCGTCCGTGGTGGAAGTNAAGGAAGCATCCGTNGCNTTTGCGCCCGGAAGCCGGGGGAAGCNTCCGCNGAAGTTGAAGCATANGTTGCGGCCGCTACCCCGGCNGAAGCNGANGCCCGCTTGAAGCTCCCGCNNAAGCGCGNAAGTTGNAACNCNACNCNTCNGGCTCGCTCTNCCNAAT]




>consensus_8341#0
TTTTTTTTTTTTTTTTTTTTTTNNTAAAACTTCAAACTGACCAACAGTTCATTATCCTCC
ATCACCGCATCACCATCTCATATAGCAATCATTCACAAAGGGGATGGCAAGAATTTATCA
TACAACAATATCATATCATTCACAAAAGGGGCACACTGGCTGACAGTTCGTCGTCCTCCA
TGATGAACCAGCTACAGGAGATGCAGGTGGAGGCGCCGCGCTCGCAGCCACCGGGGAGGC
AGCGGAGGGTCTCGAAGAGGCACTCCACTGCCAGGTGTCCGGTGGGTGGGGATGGAGGAA
GGCGGTATCTGCGCATCCCCGGCCTCGTGGAGGTCGGATCCGGCGGCTAACCCCGTCCGT
GGTGGAAGTNAAGGAAGCATCCGTNGCNTTTGCGCCCGGAAGCCGGGGGAAGCNTCCGCN
GAAGTTGAAGCATANGTTGCGGCCGCTACCCCGGCNGAAGCNGANGCCCGCTTGAAGCTC
CCGCNNAAGCGCGNAAGTTGNAACNCNACNCNTCNGGCTCGCTCTNCCNAAT

consensusID : consensus_8341#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 383
fasta sequence

                              [CATCTCATATAGNATNATTCACAAAGGGATGGCAAGAATTTATCATACAACAATATCATATCATTCACAAAAGGGGCACACTGGCTGACAGTTCGTCGTCCTCCATGATGAACCAGCTACAGGAGATGCAGGTGGAGGCGCCGCGCTCGCAGCCACCGGGGAGGCAGCGGAGGGTCTCGAAGAGGCACTCCACTGCTGCGAGGTGTCCGGTGGGTGGGGATGGAGGAGGCGGTATCTGCGCATCCCCGGCCTCGTGGAGGTCGGATNCCGCGCCGCCGCGCCTCCCCTCCTGCCCTTGCCGGATCTGGCGGCCGGCCCGGCGCCACCGCCGCCGCCCCTGCCGGCCCGGCGCCACCACGCCTCCACTGCTGCCCCTGCACAGA]

[-] EMBL AU166070             [CATCTCATATAGNATNATTCACAAAGGGATGGCAAGAATTTATCATACAACAATATCATATCATTCACAAAAGGGGCACACTGGCTGACAGTTCGTCGTCCTCCATGATGAACCAGCTACAGGAGATGCAGGTGGAGGCGCCGCGCTCGCAGCCACCGGGGAGGCAGCGGAGGGTCTCGAAGAGGCACTCCACTGCTGCGAGGTGTCCGGTGGGTGGGGATGGAGGAGGCGGTATCTGCGCATCCCCGGCCTCGTGGAGGTCGGATNCCGCGCCGCCGCGCCTCCCCTCCTGCCCTTGCCGGATCTGGCGGCCGGCCCGGCGCCACCGCCGCCGCCCCTGCCGGCCCGGCGCCACCACGCCTCCACTGCTGCCCCTGCACAGA]




>consensus_8341#1
CATCTCATATAGNATNATTCACAAAGGGATGGCAAGAATTTATCATACAACAATATCATA
TCATTCACAAAAGGGGCACACTGGCTGACAGTTCGTCGTCCTCCATGATGAACCAGCTAC
AGGAGATGCAGGTGGAGGCGCCGCGCTCGCAGCCACCGGGGAGGCAGCGGAGGGTCTCGA
AGAGGCACTCCACTGCTGCGAGGTGTCCGGTGGGTGGGGATGGAGGAGGCGGTATCTGCG
CATCCCCGGCCTCGTGGAGGTCGGATNCCGCGCCGCCGCGCCTCCCCTCCTGCCCTTGCC
GGATCTGGCGGCCGGCCCGGCGCCACCGCCGCCGCCCCTGCCGGCCCGGCGCCACCACGC
CTCCACTGCTGCCCCTGCACAGA

consensusID : consensus_8341#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 272
fasta sequence

                              [CCAACAGTTCATTATCCTCCATCACCGCATCACCATCTCATATAGCAATCATTCACAAAGGGGATGGCAAGAATTTATCATACAACAATATCATATCATTCACAAAAGGGGCACACTGGCTGACAGTTCGTCGTCCTCCATGATGAACCAGCTACAGGAGATGCAGGTGGAGGCGCCGCGNTCGCAGCCACCGGGGAGGCAGCGGAGGGTCTCGAAGAGGCANTCCACTGCTCGTGCCGATTCGGCACGAGCTCGTGCCGCTCGTGCCGAAT]

[-] EMBL BE228353             [CCAACAGTTCATTATCCTCCATCACCGCATCACCATCTCATATAGCAATCATTCACAAAGGGGATGGCAAGAATTTATCATACAACAATATCATATCATTCACAAAAGGGGCACACTGGCTGACAGTTCGTCGTCCTCCATGATGAACCAGCTACAGGAGATGCAGGTGGAGGCGCCGCGNTCGCAGCCACCGGGGAGGCAGCGGAGGGTCTCGAAGAGGCANTCCACTGCTCGTGCCGATTCGGCACGAGCTCGTGCCGCTCGTGCCGAAT]




>consensus_8341#2
CCAACAGTTCATTATCCTCCATCACCGCATCACCATCTCATATAGCAATCATTCACAAAG
GGGATGGCAAGAATTTATCATACAACAATATCATATCATTCACAAAAGGGGCACACTGGC
TGACAGTTCGTCGTCCTCCATGATGAACCAGCTACAGGAGATGCAGGTGGAGGCGCCGCG
NTCGCAGCCACCGGGGAGGCAGCGGAGGGTCTCGAAGAGGCANTCCACTGCTCGTGCCGA
TTCGGCACGAGCTCGTGCCGCTCGTGCCGAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8341#0      TTTTTTTTTTTTTTTTTTTTTTNNTAAAACTTCAAACTGACCAACAGTTCATTATCCTCC 60
consensus_8341#2      ----------------------------------------CCAACAGTTCATTATCCTCC 20
consensus_8341#1      ------------------------------------------------------------
                                                                                  

consensus_8341#0      ATCACCGCATCACCATCTCATATAGCAATCATTCACAAAGGGGATGGCAAGAATTTATCA 120
consensus_8341#2      ATCACCGCATCACCATCTCATATAGCAATCATTCACAAAGGGGATGGCAAGAATTTATCA 80
consensus_8341#1      -------------CATCTCATATAGNA-TNATTCACAAAGGG-ATGGCAAGAATTTATCA 45
                                   ************ * * ************ *****************

consensus_8341#0      TACAACAATATCATATCATTCACAAAAGGGGCACACTGGCTGACAGTTCGTCGTCCTCCA 180
consensus_8341#2      TACAACAATATCATATCATTCACAAAAGGGGCACACTGGCTGACAGTTCGTCGTCCTCCA 140
consensus_8341#1      TACAACAATATCATATCATTCACAAAAGGGGCACACTGGCTGACAGTTCGTCGTCCTCCA 105
                      ************************************************************

consensus_8341#0      TGATGAACCAGCTACAGGAGATGCAGGTGGAGGCGCCGCGCTCGCAGCCACCGGGGAGGC 240
consensus_8341#2      TGATGAACCAGCTACAGGAGATGCAGGTGGAGGCGCCGCGNTCGCAGCCACCGGGGAGGC 200
consensus_8341#1      TGATGAACCAGCTACAGGAGATGCAGGTGGAGGCGCCGCGCTCGCAGCCACCGGGGAGGC 165
                      **************************************** *******************

consensus_8341#0      AGCGGAGGGTCTCGAAGAGGCACTCCACTGCC---AGGTGTCCGGTGGGTGGGGATGGAG 297
consensus_8341#2      AGCGGAGGGTCTCGAAGAGGCANTCCACTGCT---CG-TGCCGATTCGGCACGAGCTCGT 256
consensus_8341#1      AGCGGAGGGTCTCGAAGAGGCACTCCACTGCTGCGAGGTGTCCGGTGGGTGGGGATGGAG 225
                      ********************** ********     * ** *   * **   *       

consensus_8341#0      GAAGGCGGTATCTGCGCATCCCCGGCCTCGTGGAGGTCGGATCCGGCGGC-TAACCCCGT 356
consensus_8341#2      GCCGCTCGTGCCGAAT-------------------------------------------- 272
consensus_8341#1      GA-GGCGGTATCTGCGCATCCCCGGCCTCGTGGAGGTCGGATNCCGCGCCGCCGCGCCTC 284
                      *  *   **  *                                                

consensus_8341#0      CCGTGGTGGAAGTNAAGGAAGCATCCGTNGCNTTTGCGCC-CGGAAGCCGGGGGAAGCNT 415
consensus_8341#2      ------------------------------------------------------------
consensus_8341#1      CCCTCCTGCCCTTGCCGGATCTGGCGGCCGGCCCGGCGCCACCGCCGCCGCCCCTGCCGG 344
                                                                                  

consensus_8341#0      CCGCNGAAGTTGAAGCATANGTTGCGGCCGCTACCCCGGCNGAAGCNGANGCCCGCTTGA 475
consensus_8341#2      ------------------------------------------------------------
consensus_8341#1      CCCGGCGCCACCACGCCTCCACTGCTGCCCCTGCACAGA--------------------- 383
                                                                                  

consensus_8341#0      AGCTCCCGCNNAAGCGCGNAAGTTGNAACNCNACNCNTCNGGCTCGCTCTNCCNAAT 532
consensus_8341#2      ---------------------------------------------------------
consensus_8341#1      ---------------------------------------------------------