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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8379#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1333 fasta sequence
[TCCTTTCTCCGTGACCCGAGCACCCTGTGCGGCGGTGGCCTTGCAGTGACGGCGGCGCCTCCTCCTCGACTCCTCGTCACTTTGGCCTTGCGCACCGCCCCCGCCGATCCCCATCCATCCCGCGAGCGACCACGCCGCCGTCGTTCGTCCTGCCGCTTCCACCCTGGAAGGAGGTTTAAAATGGCTCAACCTTCTGTTATCCTAGCAACTGCAAGTTATGATCACTCAATAAAATTTTGGGTAGCTAAGAGTGGTCGCTGTTACCGCACTCTTCAACATACGGAATCGCATATTAACCGCCTTGAGATAACCCCAGACAAGCGTTTCTTAGCTGCTGCTGGCAATCCTCATATCCGTCTTTTTGACATTAACTCAAACAGTAACCATCCGGTAATTAGTTATGACTCACATACTAGTAATGTGATGGCTGTGGGATTCCATTGTGATGGCAACTGGATGTATTCAGGTTCTGAGGATGGTACTGTGAGAATCTGGGATTTGCGCACTGCCACTTGTCAACGAGAATATGAAAGTCGTGCTGCTGTGAACACTGTGGTTCTGCACCCAAATCAGAAAGAGCTAATATCTGGTGATCAGAACGGAAACATACGTGTGTGGGATTTGGCTGCTAACTCGTGCAGCTGTGAGCTGGTGCCAGAGGTTGATACTGCTGTAAGATCCCTGACAGTCATGTGGGATGGG-AGTAT-GGT-GGTTGCTGCAAATAACCGTGGGACATGTTACGTCTGGCGCTTGCTTAAGGGTACTCAGACAATTACCTGCTTTGAACCCCTCCATAAATTGCAAGCACATGATGGTTACATTCTGAAGTGCCTG-CTTTCCCCAGAGTTCTGTGACCCCAACAGGTACCTTGCAACAGCCTCATCTGACCACACTGTGAAGATTTGGAATGTTGATGGCTTCAAATTGGAAAAAACTTTAGTAGGTCACCAGCGTTGGGTTTGGGACTGCGTATTCTCAGTAGATGGTGCTTATTTGATAACTGCTTCCTCTGACACTACGGCGAGATTGTGGACGATGTCAACCGGAGAGGCAATCAGGGTTTACACGTCGCATCACAAACCAGTTGTCTGCTGTGCTCTTCATGACGGAGCTGAATCAGCACCATCATAAGCAGCCCCGTGCCTCAGGCATTTTGTACATACTCCAGTTTGAAAACATGTGAAGCTCTGAAAAATTTCAGCACTCTTAGGACCTTGAGGCCAAAGCAGCTGGCTTCATGTTGCTGTAGCACCTGATTGACAAATAATGTGCATGCGCAAGGTGGACAATTGATATGATTTATTAAGCGTCTCGGTTTTTAACAAAGTGCTCT]
[+] EMBL AK111767 [TCCTTTCTCCGTGACCCGAGCACCCTGTGCGGCGGTGGCCTTGCAGTGACGGCGGCGCCTCCTCCTCGACTCCTCGTCACTTTGGCCTTGCGCACCGCCCCCGCCGATCCCCATCCATCCCGCGAGCGACCACGCCGCCGTCGTTCGTCCTGCCGCTTCCACCCTGGAAGGAGGTTTAAAATGGCTCAACCTTCTGTTATCCTAGCAACTGCAAGTTATGATCACTCAATAAAATTTTGGGTAGCTAAGAGTGGTCGCTGTTACCGCACTCTTCAACATACGGAATCGCATATTAACCGCCTTGAGATAACCCCAGACAAGCGTTTCTTAGCTGCTGCTGGCAATCCTCATATCCGTCTTTTTGACATTAACTCAAACAGTAACCATCCGGTAATTAGTTATGACTCACATACTAGTAATGTGATGGCTGTGGGATTCCATTGTGATGGCAACTGGATGTATTCAGGTTCTGAGGATGGTACTGTGAGAATCTGGGATTTGCGCACTGCCACTTGTCAACGAGAATATGAAAGTCGTGCTGCTGTGAACACTGTGGTTCTGCACCCAAATCAGAAAGAGCTAATATCTGGTGATCAGAACGGAAACATACGTGTGTGGGATTTGGCTGCTAACTCGTGCAGCTGTGAGCTGGTGCCAGAGGTTGATACTGCTGTAAGATCCCTGACAGTCATGTGGGATGGG AGTAT GGT GGTTGCTGCAAATAACCGTGGGACATGTTACGTCTGGCGCTTGCTTAAGGGTACTCAGACAATTACCTGCTTTGAACCCCTCCATAAATTGCAAGCACATGATGGTTACATTCTGAAGTGCCTG CTTTCCCCAGAGTTCTGTGACCCCAACAGGTACCTTGCAACAGCCTCATCTGACCACACTGTGAAGATTTGGAATGTTGATGGCTTCAAATTGGAAAAAACTTTAGTAGGTCACCAGCGTTGGGTTTGGGACTGCGTATTCTCAGTAGATGGTGCTTATTTGATAACTGCTTCCTCTGACACTACGGCGAGATTGTGGACGATGTCAACCGGAGAGGCAATCAGGGTTTACACGTCGCATCACAAACCAGTTGTCTGCTGTGCTCTTCATGACGGAGCTGAATCAGCACCATCATAAGCAGCCCCGTGCCTCAGGCATTTTGTACATACTCCAGTTTGAAAACATGTGAAGCTCTGAAAAATTTCAGCACTCTTAGGACCTTGAGGCCAAAGCAGCTGGCTTCATGTTGCTGTAGCACCTGATTGACAAATAATGTGCATGCGCAAGGTGGACAATTGATATGATTTATTAAGCGTCTCGGTTTTTAACAAAGTGCTCT]
[+] EMBL CA998355 [ ATCACTCAATAAAATTTTGGGAAGCTAAGAGTGGTCGCTGTTACCGCACTCTTCAACATACGGAATCGCATATTAACCGCCTTGAGATAACCCCAGACAAGCGTTTCTTAGCTGCTGCTGGCAATCCTCATATCCGTCTTTTTGACATTAACTCAAACAGTAACCATCCGGTAATTAGTTATGACTCACATACTAGTAATGTGATGGCTGTGGGATTCCATTGTGATGGCAACTGGATGTATTCAGGTTCTGAGGATGGTACTGTGAGAATCTGGGATTTGCGCACTGCCACTTGTCAACGAGAATATGAAAGTCGTGCTGCTGTGAACACTGTGGTTCTGCACCCAAATCAGAAAGAGCTAATATCTGGTGATCAGAACGGAAACATACGTGTGTGGGATTTGGCTGCTAACTCGTGCAGCTGTGAGCTGGTGCCAGAGGTTGATACTGCTGTAAGATCCCTGACAGTCATGTGGGATGGGNAGTAT GGT GGTTGCTGNCAATAACCGTGGGACATGTTACGTCTGGCGCTTGCTTAAGGGTACTCAGACAATTACCTGCTTTGAACCCCTCCATAAATTGCAAGCACATGATGGTTACATTCTGAAGTGCCTG CTTTCCCCAGAGTTCTGTGACCCCAACAGGTACCTTGCAACAGCCTCATCTGACCACACTGTGAAGATTTGGA ]
[+] EMBL C27645 [ GCAACTGGATGTATTCAGGTTCTGAGGATGGTACTGTGAGAATCTGGGATTTGCGCACTGCCACTTGTCAACGAGAATATGAAAGTCGTGCTGCTGTGAACACTGTGGTTCTGCACCCAAATCAGAAAGAGCTAATATCTGGTGATCAGAACGGAAACATACGTGTGTGGGATTTGGCTGCTAACTCGTGCAGCTGTGAGCTGGTGCCAGAGGTTGATACTGCTGTAAGATCCCTGACAGTCATGTGGGATGGG AGTAT GGT GGTTGCTGCAAATAACCGTGGGACATGTTACGTCTGGCGCTTGCTTAAGGGTACTCAGACAATTACCTGCTTTGAACCCCTCCATAAATTGCAAGCACATGATGGTTACATTCTGAAGTGCCTGNTTTTCCCCAGAGTTCTTTGACCCC ACAGGTACCTTGC ]
[+] EMBL CF323907 [ TTCTGAGGATGGTACTGTGAGAATCTGGGATTTGCGCACTGCCACTTGTCAACGAGAATATGAAAGTCGTGCTGCTGTGAACACTGTGGTTCTGCACCCAAATCAGAAAGAGCTAATATCTGGTGATCAGAACGGAAACATACGTGTGTGGGATTTGGCTGCTAACTCGTGCAGCTGTGAGCTGGTGCCAGAGGTTGATACTGCTGTAAGATCCCTGACAGTCATGTGGGATGGG AGTATGGGTGGGTTGCTGCAAATAACCGTGGGACATGTTACGTCTGGCGCTTGCTTAAGGGTACTCAGACAATTACCTGCTTTGAACCCCTCCATAAATTGCAAGCACATGATGGTTACATTCTGAAGTGCCTG CTTTCCCCAGAGTTCTGTGACCCCAACAGGTACCTTGCAACAGCCTCATCTGACCACACTGTGAAGATTTGGAATGTTGATGGCTTCAAATTGGAAAAAACTTTAGTAGGTCACCAGCGTTGGGTTTGGGACTGCGTATTCTCAGTAGATGGTGCTTATTTGATAACTGCTTCCTCTGACACTACGGCGAGATTGTGGACGATGTCAACCGGAGAGGCAATCAGGGTTTACACGTCGCATCACAAACCAGTTGTCTGCTGTGCTCTTCATGACGGAGCTGAATCAGCACC ]
consensusID : consensus_8379#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 851 fasta sequence
[GGTGGCCTTGCAGTGACGGCGGCGCCTCCTCCTCGACTCCTCGTCACTTTGGCCTTGCGCACCGCCCCCGCCGATCCCCATCCATCCCGCGAGCGACCACGCCGCCGTCGTTCGTCCTGCCGCTTCCACCCTGGAAGGAGGTTTAAAATGGCTCAACCTTCTGTTATCCTAGCAACTGCAAGTTATGATCACTCAATAAAATTTTGGGAAGCTAAGAGTGGTCGCTGTTACCGCACTCTTCAACATACGGAATCGCATATTAACCGCCTTGAGATAACCCCAGACAAGCGTTTCTTAGCTGCTGCTGGCAATCCTCATATCCGTCTTTTTGACATTAACTCAAACAGTAACCATCCGGTAATTAGTTATGACTCACATACTAGTAATGTGATGGCTGTGGGATTCCATTGGTGATGGCAACTGGATGTATTCAGGTTCTGAGGATGGTACTGTGAGAATCCTGGAATTGCCGGTGGGTTATCTGACTTATTATTGCCTACTGGTTCTTGAATNTGCAGCTNNTATTTTTTTGGCCAGTGGAACTCGGTGGAAATTTTTTTTCTCGCATACTCTGATTAGACTAGCCTGCAGACAATCTCTAGCTGCTCTCATGCAGGTCACATATAGTCATCACCTGATNTCTCTATTCTGAATATCGATGCACATGGAAAGGTGAAAATCATATTTATAGTAACAGACCCATATACTGCTTAGCTAGGCTAATCTACGGTGGGGTGCGTATGCTCTATCAGACTATAAGGCTCCCCCACGAAAAGAAACGGCGGTGCCCCGCCACAGTTTTGTAGAAAAATTTGTTGATGGAATCGGTCAGGGCACAGGATGACACTCAT]
[+] EMBL AW155173 [GGTGGCCTTGCAGTGACGGCGGCGCCTCCTCCTCGACTCCTCGTCACTTTGGCCTTGCGCACCGCCCCCGCCGATCCCCATCCATCCCGCGAGCGACCACGCCGCCGTCGTTCGTCCTGCCGCTTCCACCCTGGAAGGAGGTTTAAAATGGCTCAACCTTCTGTTATCCTAGCAACTGCAAGTTATGATCACTCAATAAAATTTTGGGAAGCTAAGAGTGGTCGCTGTTACCGCACTCTTCAACATACGGAATCGCATATTAACCGCCTTGAGATAACCCCAGACAAGCGTTTCTTAGCTGCTGCTGGCAATCCTCATATCCGTCTTTTTGACATTAACTCAAACAGTAACCATCCGGTAATTAGTTATGACTCACATACTAGTAATGTGATGGCTGTGGGATTCCATTGGTGATGGCAACTGGATGTATTCAGGTTCTGAGGATGGTACTGTGAGAATCCTGGAATTGCCGGTGGGTTATCTGACTTATTATTGCCTACTGGTTCTTGAATNTGCAGCTNNTATTTTTTTGGCCAGTGGAACTCGGTGGAAATTTTTTTTCTCGCATACTCTGATTAGACTAGCCTGCAGACAATCTCTAGCTGCTCTCATGCAGGTCACATATAGTCATCACCTGATNTCTCTATTCTGAATATCGATGCACATGGAAAGGTGAAAATCATATTTATAGTAACAGACCCATATACTGCTTAGCTAGGCTAATCTACGGTGGGGTGCGTATGCTCTATCAGACTATAAGGCTCCCCCACGAAAAGAAACGGCGGTGCCCCGCCACAGTTTTGTAGAAAAATTTGTTGATGGAATCGGTCAGGGCACAGGATGACACTCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8379#0 TCCTTTCTCCGTGACCCGAGCACCCTGTGCGGCGGTGGCCTTGCAGTGACGGCGGCGCCT 60
consensus_8379#1 ---------------------------------GGTGGCCTTGCAGTGACGGCGGCGCCT 27
***************************
consensus_8379#0 CCTCCTCGACTCCTCGTCACTTTGGCCTTGCGCACCGCCCCCGCCGATCCCCATCCATCC 120
consensus_8379#1 CCTCCTCGACTCCTCGTCACTTTGGCCTTGCGCACCGCCCCCGCCGATCCCCATCCATCC 87
************************************************************
consensus_8379#0 CGCGAGCGACCACGCCGCCGTCGTTCGTCCTGCCGCTTCCACCCTGGAAGGAGGTTTAAA 180
consensus_8379#1 CGCGAGCGACCACGCCGCCGTCGTTCGTCCTGCCGCTTCCACCCTGGAAGGAGGTTTAAA 147
************************************************************
consensus_8379#0 ATGGCTCAACCTTCTGTTATCCTAGCAACTGCAAGTTATGATCACTCAATAAAATTTTGG 240
consensus_8379#1 ATGGCTCAACCTTCTGTTATCCTAGCAACTGCAAGTTATGATCACTCAATAAAATTTTGG 207
************************************************************
consensus_8379#0 GTAGCTAAGAGTGGTCGCTGTTACCGCACTCTTCAACATACGGAATCGCATATTAACCGC 300
consensus_8379#1 GAAGCTAAGAGTGGTCGCTGTTACCGCACTCTTCAACATACGGAATCGCATATTAACCGC 267
* **********************************************************
consensus_8379#0 CTTGAGATAACCCCAGACAAGCGTTTCTTAGCTGCTGCTGGCAATCCTCATATCCGTCTT 360
consensus_8379#1 CTTGAGATAACCCCAGACAAGCGTTTCTTAGCTGCTGCTGGCAATCCTCATATCCGTCTT 327
************************************************************
consensus_8379#0 TTTGACATTAACTCAAACAGTAACCATCCGGTAATTAGTTATGACTCACATACTAGTAAT 420
consensus_8379#1 TTTGACATTAACTCAAACAGTAACCATCCGGTAATTAGTTATGACTCACATACTAGTAAT 387
************************************************************
consensus_8379#0 GTGATGGCTGTGGGATTCCATTG-TGATGGCAACTGGATGTATTCAGGTTCTGAGGATGG 479
consensus_8379#1 GTGATGGCTGTGGGATTCCATTGGTGATGGCAACTGGATGTATTCAGGTTCTGAGGATGG 447
*********************** ************************************
consensus_8379#0 TACTGTGAGAATCTGGGATTTGCGCACTGCCACTTGTCAACGAGAATATGAAAGTCGTGC 539
consensus_8379#1 TACTGTGAGAATCCTGGAATTGC---CGGTGGGTTATC----------TGA----CTTAT 490
************* *** **** * * ** ** *** * *
consensus_8379#0 TGCTGTGAACACTGTGGTTCTGCACCCAAATCAGAAAGAGCTAATATCTGGTGATCAGAA 599
consensus_8379#1 TATTGCCTAC----TGGTTCT-----TGAATNTGC---AGCTNNTATTT----TTTTGGC 534
* ** ** ******* *** * **** *** * * *
consensus_8379#0 CGGAAACATACGTGTGTGGGATTTGGCTGCTAACTCGTGCAGCTGTGAGCTGGTGCCAGA 659
consensus_8379#1 CAGTGGAACTCG---GTGGAAATT---TTTTTTCTCGCATA-CTCTGATT---------A 578
* * * ** **** * ** * * **** * ** *** *
consensus_8379#0 GGTTGATACTGCTGTAAGATCCCTGACAG-TCATGTGGGATGGGAGTATGGTGGTTGCTG 718
consensus_8379#1 GACTAGC-CTGCAG-ACAATCTCTAGCTGCTCTCATGCAGGTCACATATAGTCATCACCT 636
* * **** * * *** ** * * ** ** *** ** * *
consensus_8379#0 CAAATAACCGTGGGACATGTTACGTCTGGCGCTTGCTTAAGGGTACTCAGACAATTACCT 778
consensus_8379#1 GATNTCTCTATTCTGAATATC------GATGCACATGGAAAGGT-----GAAAATCATAT 685
* * * * ** * * ** ** *** ** *** * *
consensus_8379#0 GCTTTG-AACCCCTCCATAAATTGCAAGCACATGATGGTTACATTCTGAAGTGCCTGCTT 837
consensus_8379#1 TTATAGTAACAGACCCATATACTGCTTAGCTAGGCTAATC-TACGGTGGGGTGCGTATGC 744
* * *** ***** * *** * * * * * ** **** *
consensus_8379#0 TCCCCAGAGTTCTGTGACCCCAACAGGTACCTTGCAACAGCCTCATCTGACCACACTGTG 897
consensus_8379#1 TCTATCAGACTATAAGGCTCCCCCACGAAAA--GAAACGGCGGTGCCCCGCCACAGTTTT 802
** * * * * ** ** * * * *** ** * ***** * *
consensus_8379#0 AAGATTTGGAATGTTGATGGCTTCAAATTGGAAAAAACTTTAGTAGGTCACCAGCGTTGG 957
consensus_8379#1 GTAGAAAAATTTGTTGATGG-----AATCGGTCAGGGCAC-AGGATGACACTCAT----- 851
********* *** ** * * ** * * ***
consensus_8379#0 GTTTGGGACTGCGTATTCTCAGTAGATGGTGCTTATTTGATAACTGCTTCCTCTGACACT 1017
consensus_8379#1 ------------------------------------------------------------
consensus_8379#0 ACGGCGAGATTGTGGACGATGTCAACCGGAGAGGCAATCAGGGTTTACACGTCGCATCAC 1077
consensus_8379#1 ------------------------------------------------------------
consensus_8379#0 AAACCAGTTGTCTGCTGTGCTCTTCATGACGGAGCTGAATCAGCACCATCATAAGCAGCC 1137
consensus_8379#1 ------------------------------------------------------------
consensus_8379#0 CCGTGCCTCAGGCATTTTGTACATACTCCAGTTTGAAAACATGTGAAGCTCTGAAAAATT 1197
consensus_8379#1 ------------------------------------------------------------
consensus_8379#0 TCAGCACTCTTAGGACCTTGAGGCCAAAGCAGCTGGCTTCATGTTGCTGTAGCACCTGAT 1257
consensus_8379#1 ------------------------------------------------------------
consensus_8379#0 TGACAAATAATGTGCATGCGCAAGGTGGACAATTGATATGATTTATTAAGCGTCTCGGTT 1317
consensus_8379#1 ------------------------------------------------------------
consensus_8379#0 TTTAACAAAGTGCTCT 1333
consensus_8379#1 ----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||