cluster # 8407

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Oryza sativa
cluster # 8407 cluster # 8407 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8407#0 length = 726 sequences # 2

consensus_8407#1 length = 466 sequences # 2
consensus_8407#2 length = 393 sequences # 1

consensusID : consensus_8407#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 726
fasta sequence

                              [CGTCGAGACCAACACATAGAGAGATCGACATCGATCGCNTTCTAACTT-CTAAGTTGTGATTGANATTTAAAACCGAGAACCATTGGAGGCGGGCATGACATGCACGGCGGCGGCCAGAACGGCGGCGTGAAGGGGC-TGGTCTCCAAGCTCGTCGGCGGCGGTGGCCATGGCGGCGGACACGGCGGCGGACACGGGTACGAGCAAGGCTACGGCGGGCACGGTTACCCTCCCCACGCCGGCGCCGCCCACGG-GGGTAACCCTCCTCAGCACGGCGCGTATCCTCCACAGCACGGCGCCTACTCCGGGCACGGTTACGNGGGGGAAGCCTACCCTTCGAACGCNGCGCCACATGGAGGGCACATGGGATCGTACCACACCGGCCATGGCGGCGGCGGCGGGCGTCACTACGGCGGCAAGCACAAGGGCGGCATGTTCGGCGGCGGAAAGTGGAAGTGAAGCGGCTAGCTAGCTCTACGTACACTATACGTGCCCACCAGCTTTCTGCCCTGCTACACCTACGTATAATATCTGCACGAGTATGAGTATCAACCATGTGGCGTACGCGTATATATACATACCTAATTAAGAAATAAATAAAGTGCATGCAGGCAGACAGATCTGTGTGTATACATGAGCTTAATGATCAGCTGATGAGTTGTGCAAATTAAGCATGTGGTGACGTATATATACTTTGTGTGTACTGATATACGTACACTTTGCAAAAAA]

[+] EMBL OSC4501              [CGTCGAGACCAACACATAGAGAGATCGACATCGATCGCNTTCTAACTT CTAAGTTGTGATTGANATTTAAAACCGAGAACCATTGGAGGCGGGCATGACATGCACGGCGGCGGCCAGAACGGCGGCGTGAAGGGGC TGGTCTCCAAGCTCGTCGGCGGCGGTGGCCATGGCGGCGGACACGGCGGCGGACACGGGTACGAGCAAGGCTACGGCGGGCACGGTTACCCTCCCCACGCCGGCGCCGCCCACGG GGGTAACCCTCCTCAGCACGGCGCGTATCCTCCACAGCACGGCGCCTACTCCGGGCACGGTTACGNGGGGGAAGCCTACCCTTCGAACGCNGCGCCACATGGAGGGCACATGGGA                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU165804             [                                   CGCCTTCTAACTTNTTAAGTTGTGATTGAGATTTAAACCCGAGAACCATTGAAGCCGGGCATGACATGCACGGCGNCGGCCAGAACGNCGGCGT AAGGGGCTTGGTCTCCAAGCTCGTCGGCGNCGGTGGCCATGNCGGCGGACACGGCGGCGGACACGGGTACGAGCAAGGCTACGGCGGGCACGGTTACCCTCCCCACGCCGGCGCCGCCCACGGCGCGT ACCCTCCTCAGCACGGCGCGTATCCTCCACAGCACGGCGCCTACCCCGGGCACGGTTACGTGCCGGGAGCCTACCCTTCGAACGCCGCGCCACATGGAGGGCACATGGGATCGTACCACACCGGCCATGGCGGCGGCGGCGGGCGTCACTACGGCGGCAAGCACAAGGGCGGCATGTTCGGCGGCGGAAAGTGGAAGTGAAGCGGCTAGCTAGCTCTACGTACACTATACGTGCCCACCAGCTTTCTGCCCTGCTACACCTACGTATAATATCTGCACGAGTATGAGTATCAACCATGTGGCGTACGCGTATATATACATACCTAATTAAGAAATAAATAAAGTGCATGCAGGCAGACAGATCTGTGTGTATACATGAGCTTAATGATCAGCTGATGAGTTGTGCAAATTAAGCATGTGGTGACGTATATATACTTTGTGTGTACTGATATACGTACACTTTGCAAAAAA]




>consensus_8407#0
CGTCGAGACCAACACATAGAGAGATCGACATCGATCGCNTTCTAACTTCTAAGTTGTGAT
TGANATTTAAAACCGAGAACCATTGGAGGCGGGCATGACATGCACGGCGGCGGCCAGAAC
GGCGGCGTGAAGGGGCTGGTCTCCAAGCTCGTCGGCGGCGGTGGCCATGGCGGCGGACAC
GGCGGCGGACACGGGTACGAGCAAGGCTACGGCGGGCACGGTTACCCTCCCCACGCCGGC
GCCGCCCACGGGGGTAACCCTCCTCAGCACGGCGCGTATCCTCCACAGCACGGCGCCTAC
TCCGGGCACGGTTACGNGGGGGAAGCCTACCCTTCGAACGCNGCGCCACATGGAGGGCAC
ATGGGATCGTACCACACCGGCCATGGCGGCGGCGGCGGGCGTCACTACGGCGGCAAGCAC
AAGGGCGGCATGTTCGGCGGCGGAAAGTGGAAGTGAAGCGGCTAGCTAGCTCTACGTACA
CTATACGTGCCCACCAGCTTTCTGCCCTGCTACACCTACGTATAATATCTGCACGAGTAT
GAGTATCAACCATGTGGCGTACGCGTATATATACATACCTAATTAAGAAATAAATAAAGT
GCATGCAGGCAGACAGATCTGTGTGTATACATGAGCTTAATGATCAGCTGATGAGTTGTG
CAAATTAAGCATGTGGTGACGTATATATACTTTGTGTGTACTGATATACGTACACTTTGC
AAAAAA

consensusID : consensus_8407#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 466
fasta sequence

                              [GCGGACNCGGGTGCGANCAAGGCTACGCGGGCNCGGTTACCCTCCCCACGCCGGCGCCGCCCACGGCGCGTACCCTCCTCAGCACGGNGCGTATCCTCCACAGCACGGCGCCTACCCCGGGCNCGGTTACGTGCCGGGAGCCTACCCTTCGAACGCCGCGCCACATGGAGGGCACATGGGATCGTACCACNCCGTCCATGNCGGCGGCGGCGGGNGTCACTACGGCGGCAAGCACAAGGGCGGCATGTTCGGCGGCGGAAAGTGGAAGTNAAGCGGCTAGCTAGCTCTACGTACNCTATACGTGCCCACCAGCTTTNTGCCCTGCTACACCTACGTATAATATCTGCACGAGTATGAGTATCAACCATGTGGCGTACGCGTATATATACATCCCTAATTAAGAAATAAATAAAGTGCATGCAGGCAGACAGATCTGTGTGTATACATGAGCTTAAAAAAAAAAAAA]

[+] EMBL AT003661             [GCGGACNCGGGTGCGANCAAGGCTACGCGGGCNCGGTTACCCTCCCCACGCCGGCGCCGCCCACGGCGCGTACCCTCCTCAGCACGGNGCGTATCCTCCACAGCACGGCGCCTACCCCGGGCNCGGTTACGTGCCGGGAGCCTACCCTTCGAACGCCGCGCCACATGGAGGGCACATGGGATCGTACCACNCCGTCCATGNCGGCGGCGGCGGGNGTCACTACGGCGGCAAGCACAAGGGCGGCATGTTCGGCGGCGGAAAGTGGAAGTNAAGCGGCTAGCTAGCTCTACGTACNCTATACGTGCCCACCAGCTTTNTGCCCTGCTACACCTACGTATAATATCTGCACGAGTATGAGTATCAACCATGTGGCGTACGCGTATATATACATCCCTAATTAAGAAATAAATAAAGTGCATGCAGGCAGACAGATCTGTGTGTATACATGAGCTTAAAAAAAAAAAAA]
[+] EMBL AT003690             [                                                                                                      GCTCGGCGCCTACCCCGGGCACGGTTACGTGCCGGGAGCCTACCCTTCGAACNCCGCGCCACATGGAGGGCACATGGGATCGTACCACACCGGCCATGGCGGCGGCGGCGGGCGTCACTACGGCGGCAAGCACAAGGGCGGCATGTTCGGCGGCGGAAAGTGGAAGTGAAGCGGCTAGCTAGCTCTACGTACACTATACGTGCCCACCAGCTTTCTGCCCTGCTACACCTACGTATAATATCTGCCCGAGTATGAGTATCAACCATGTGGCGTACGCGTATATATACATACCTAATTAAGAAATAAATAAAGTGCATGCAGGCAGACCGGTCTGTGTGTATACATGAGCTTAAAAAAAAAAAAA]




>consensus_8407#1
GCGGACNCGGGTGCGANCAAGGCTACGCGGGCNCGGTTACCCTCCCCACGCCGGCGCCGC
CCACGGCGCGTACCCTCCTCAGCACGGNGCGTATCCTCCACAGCACGGCGCCTACCCCGG
GCNCGGTTACGTGCCGGGAGCCTACCCTTCGAACGCCGCGCCACATGGAGGGCACATGGG
ATCGTACCACNCCGTCCATGNCGGCGGCGGCGGGNGTCACTACGGCGGCAAGCACAAGGG
CGGCATGTTCGGCGGCGGAAAGTGGAAGTNAAGCGGCTAGCTAGCTCTACGTACNCTATA
CGTGCCCACCAGCTTTNTGCCCTGCTACACCTACGTATAATATCTGCACGAGTATGAGTA
TCAACCATGTGGCGTACGCGTATATATACATCCCTAATTAAGAAATAAATAAAGTGCATG
CAGGCAGACAGATCTGTGTGTATACATGAGCTTAAAAAAAAAAAAA

consensusID : consensus_8407#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 393
fasta sequence

                              [CTCGTCGAGACCAACACTAGAGAGATCGACATCGATCGTCTTCTAACTTCTAAGTTGTGATTGAGATTAAAACCGAGAACCTGGGAGGCGGGCATGACATGCAGGAGGCGGCCAGAACGGCGGCGTGAAGGGGCTGGTCTCCAAGCTCGTCGGCGGCGGTGGCCATGGCGGCGGACACGGAGGAGGGCGGGCACGGGTACGAAGCAAGGGCTACGGGCGGGGCACGGGTTACCCCTTCCCCCACGCCGGGCGCCCGCCCACGGATCGCGTTACTCCTCCTCAGGCACGGGCGACCTAACCCCTCCACAGGACACGGGCGGCCCTAACCCCCCGGGGCAACGGGCCTTAACGGTGGGCACGGGGGGCGACCCTTAACACCCTNTTCGGATAAAC]

[+] EMBL CA753074             [CTCGTCGAGACCAACACTAGAGAGATCGACATCGATCGTCTTCTAACTTCTAAGTTGTGATTGAGATTAAAACCGAGAACCTGGGAGGCGGGCATGACATGCAGGAGGCGGCCAGAACGGCGGCGTGAAGGGGCTGGTCTCCAAGCTCGTCGGCGGCGGTGGCCATGGCGGCGGACACGGAGGAGGGCGGGCACGGGTACGAAGCAAGGGCTACGGGCGGGGCACGGGTTACCCCTTCCCCCACGCCGGGCGCCCGCCCACGGATCGCGTTACTCCTCCTCAGGCACGGGCGACCTAACCCCTCCACAGGACACGGGCGGCCCTAACCCCCCGGGGCAACGGGCCTTAACGGTGGGCACGGGGGGCGACCCTTAACACCCTNTTCGGATAAAC]




>consensus_8407#2
CTCGTCGAGACCAACACTAGAGAGATCGACATCGATCGTCTTCTAACTTCTAAGTTGTGA
TTGAGATTAAAACCGAGAACCTGGGAGGCGGGCATGACATGCAGGAGGCGGCCAGAACGG
CGGCGTGAAGGGGCTGGTCTCCAAGCTCGTCGGCGGCGGTGGCCATGGCGGCGGACACGG
AGGAGGGCGGGCACGGGTACGAAGCAAGGGCTACGGGCGGGGCACGGGTTACCCCTTCCC
CCACGCCGGGCGCCCGCCCACGGATCGCGTTACTCCTCCTCAGGCACGGGCGACCTAACC
CCTCCACAGGACACGGGCGGCCCTAACCCCCCGGGGCAACGGGCCTTAACGGTGGGCACG
GGGGGCGACCCTTAACACCCTNTTCGGATAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8407#0      CGTCGAGACCAACACATAGAGAGATCGACATCGATCGCNTTCTAACTTCTAAGTTGTGAT 60
consensus_8407#1      ------------------------------------------------------------
consensus_8407#2      ------------------------------------------------------------
                                                                                  

consensus_8407#0      TGANATTTAAAACCGAGAACCATTGGAGGCGGGCATGACATGCACGGCGGCGGCCAGAAC 120
consensus_8407#1      ------------------------------------------------------------
consensus_8407#2      ------------------------------------------------------------
                                                                                  

consensus_8407#0      GGCGGCGTGAAGGGGCTGGTCTCCAAGCTCGTCGGCGGCGGTGGCCATGGCGGCGGACAC 180
consensus_8407#1      ------------------------------------------------------------
consensus_8407#2      ------------------------------------------------------------
                                                                                  

consensus_8407#0      GGCGGCGGACACGGGTACGAGCAAGGCTACGGCGGGCACGGTTACCCTCCCCACGCCGGC 240
consensus_8407#1      ----GCGGACNCGGGTGCGANCAAGGCTACG-CGGGCNCGGTTACCCTCCCCACGCCGGC 55
consensus_8407#2      ---------------------------------------------------CTCGTCGAG 9
                                                                         * ** **  

consensus_8407#0      GCCGCCCACGGGGGTAACCCTCCTCAGCACGGCGCGTATCCTCCACAGCACGGCGCCTAC 300
consensus_8407#1      GCCGCCCACGGCGCGTACCCTCCTCAGCACGGNGCGTATCCTCCACAGCACGGCGCCTAC 115
consensus_8407#2      ACCAACACTAGAGAG-ATCGACATCGAT-CGTCTTCTAACTTCTAAGTTGTGATTGAGAT 67
                       **  *    * *   * *  * **    **     ** * ** *      *      * 

consensus_8407#0      TCCGGGCACGGTTACGNGGGGGAAGCCTACCCTTCGAACGCNGCGCCACATGGAGGGCAC 360
consensus_8407#1      CCCGGGCNCGGTTACGTGCCGGGAGCCTACCCTTCGAACGCCGCGCCACATGGAGGGCAC 175
consensus_8407#2      TAAAACCGAGAACCTGGGAGGCGGGCATGACATGCAGGAGGCG-GCCAGAACGGCGGCGT 126
                            *  *     * *  *   ** *  * * *    *  * **** *  *  ***  

consensus_8407#0      ATGGGATCGTACCACACCGGCCATGGCGGCGGCGGCGGGCGTCACTACGGCGGCAAGCAC 420
consensus_8407#1      ATGGGATCGTACCACNCCGTCCATGNCGGCGGCGGCGGGNGTCACTACGGCGGCAAGCAC 235
consensus_8407#2      GAAGGGGCTGGT--CTCCAAGCTCGTCGGCGGCGGTGG------CCATGGCGGCGGACAC 178
                         **  *      * **   *  * ********* **      * * ******   ***

consensus_8407#0      A-AGGGCGGCATGTTCGGCGGCGGAAAGTGGAAGTGAAGCGGCTAGCTAGCT-CTACGTA 478
consensus_8407#1      A-AGGGCGGCATGTTCGGCGGCGGAAAGTGGAAGTNAAGCGGCTAGCTAGCT-CTACGTA 293
consensus_8407#2      GGAGGAGGGCGGGCACGGGTACGAAGCAAGGGCTACGGGCGGGGCACGGGTTACCCCTTC 238
                        ***  ***  *  ***   ** *    **       ****    *  * * *  * * 

consensus_8407#0      CACTATACGTGCCCACCAGCTTTCTGCCCTGCTACACCTACGTATAATATCTGCACGAGT 538
consensus_8407#1      CNCTATACGTGCCCACCAGCTTTNTGCCCTGCTACACCTACGTATAATATCTGCACGAGT 353
consensus_8407#2      CCCCACGCCGGGCGCCCGCCCACGGATCGCGTTACTCCTCCTCAG-------GCACGGGC 291
                      * * *  *  * *  **  *       *  * *** *** *  *        ***** * 

consensus_8407#0      -ATGAGTATCAACCATGTGGCGTACGCGTATATATACATACCTAATTAAGAAATAAATAA 597
consensus_8407#1      -ATGAGTATCAACCATGTGGCGTACGCGTATATATACATCCCTAATTAAGAAATAAATAA 412
consensus_8407#2      GACCTAACCCCTCCACAGGACACGGGCGGCCCTA-ACCCCCCGGGGCAACGGGCCTTAAC 350
                       *       *  ***   * *    ***    ** **   **     **         * 

consensus_8407#0      AGTGCATGCAGGCAGACAGATCTGTGTGTATACATGAGCTTAATGATCAGCTGATGAGTT 657
consensus_8407#1      AGTGCATGCAGGCAGACAGATCTGTGTGTATACATGAGCTTAAAAAAAAAAAAA------ 466
consensus_8407#2      GGTGGGCACGGG-GGGCGACCCTTAACACCCTNTTCGGATAAAC---------------- 393
                       ***    * **  * *    **           *  * * **                 

consensus_8407#0      GTGCAAATTAAGCATGTGGTGACGTATATATACTTTGTGTGTACTGATATACGTACACTT 717
consensus_8407#1      ------------------------------------------------------------
consensus_8407#2      ------------------------------------------------------------
                                                                                  

consensus_8407#0      TGCAAAAAA 726
consensus_8407#1      ---------
consensus_8407#2      ---------