cluster # 8463

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Oryza sativa
cluster # 8463 cluster # 8463 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8463#0 length = 1540 sequences # 4

consensus_8463#1 length = 356 sequences # 1

consensusID : consensus_8463#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1540
fasta sequence

                              [CTCAACCAAACTTGAAAGAAATAGCAGAAGCAGAGATGCAGCAATTGTTGACACTGGTTCGGCACACGGCTGATCTGTACCATGAGTTGCATGCATTAGATAGATTTGAGCAAGATTATCGCCGTAAATTGGAGGAAGAGAAAAAATCAGTTGCTTTTGAAAGAGGGGACACTGTTCAGATTATAAGGCAAGAATTGAAGAGCCAAAGGAGGCATGTGAAAAGCTTGAAGAAAAAGTCCCTTTGGAATAAGATGCTCGAAGACGTCATGGATAAACTTGTGGATATTGTCCACTTTTTACATGTAGAGATTCAAGAATCTTTT-GGGCCCTATGATGGAGCTTTACAATTGAATCAACCTTCAGAGAGCCGTCAGACGTTAGGATCAGCTGGCCTCTCGCTGCACTATGCCAATATCATTTCACAGATTGACAACATTGTTTCCCGAAGCACCGTTCCACCACAAAGCACAAGAGATGCGCTCTATCAAGGACTGCCCCCAACTATTAAGTCTGCTCTTCGAAAAAAACTACATAATTGCCCACAACCACAAGAGGTTCCGATCACTGAAATCAGATCTTCAATGGAGAGAACCTTGCAATGGATTATCCCTATTGCCAACAATACAGCCAGAGCTCACCATGGATTCGGATGGGTCGGCGAGTGGGCGAACACAGGGAACGATGCGATGCGGAGGGCGGCTGGGCAGCCAGACGTGATCAAGATCGAGACATTCTACCATGCGGACAAGGCCAAGACGGAGGCGTGCATCCTGGACCTCGTCCTGTGGCTTCACCACCTCATCAGCTACAGCCGCCCAAGCAACGGTGGCAGGTCCAGGTCGCCGAGCAGGTCGCCGGTGCGCTCCCCTCCCCTCACGCCGCCGCACCAGGTGCCGACGACGACGTCGTCGTCCTCGCCGCCACCGCCGGCGGTGGCGAGGCCGAGCGGCGGCACCGGCGGT-GGCCTCACCAGGGAGGACCGCGCGATGCTCCAGGACGTGTACGCGGGCCGCCGGCGTCGCGCTCCCTGTCACAGCAGGAGCCAGGAGCTGTCGTCAGCTCGCGGCGGCGGCGGCGCCGGCGGCGACAGCTCGTCGGCGGTGGCAGCCGCGGCGCAGCTGAGCAAGAACGACAGGCTGAGCAAGAGCAGCAACGATGCTCCGGCGCGGAGCGGCGGCGGCGGCGGCGGCGGGAAGCTCTTCCCGCTGAGCAGGAGGCCCTCCTCCGCCGTGGTGTCGCCCGCCGTCGACTTCGACATCGACGGCATCAAGGCGCTGGCGGATGCACAGAAGCGGCAGTGACCGTGACGTCACAGCCACCATCTTCTTCTCCGCCGCAAATTTTGCTCAAACTGTCCACTGCTCAAACGCAGCGACGCCGGAAAACCGTGAGAAAAAATAAGAGAAAAAAAATCAAGAAAGAAATGGAGATGGCCAGATGATGAGAAACCAAGATCGGTGATGGATGCTTAATTAGGGTGTGATTGATACATGATCAATTAATTAATTAATCGCCATTGTATATTGTACGTATAAGGGAG]

[+] EMBL OSC109861            [CTCAACCAAACTTGAAAGAAATAGCAGAAGCAGAGATGCAGCAATTGTTGACACTGGTTCGGCACACGGCTGATCTGTACCATGAGTTGCATGCATTAGATAGATTTGAGCAAGATTATCGCCGTAAATTGGAGGAAGAGAAAAAATCAGTTGCTTTTGAAAGAGGGGACACTGTTCAGATTATAAGGCAAGAATTGAAGAGCCAAAGGAGGCATGTGAAAAGCTTGAAGAAAAAGTCCCTTTGGAATAAGATGCTCGAAGACGTCATGGATAAACTTGTGGATATTGTCCACTTTTTACATGTAGAGATTCAAGAATCTTTTGGGGCCCTATGATGGAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AK106428             [                                                                                                                                                          TTTTGAAAGAGGGGACACTGTTCAGATTATAAGGCAAGAATTGAAGAGCCAAAGGAGGCATGTGAAAAGCTTGAAGAAAAAGTCCCTTTGGAATAAGATGCTCGAAGACGTCATGGATAAACTTGTGGATATTGTCCACTTTTTACATGTAGAGATTCAAGAATCTTTT GGGACCTATGATGGAGCTTTACAATTGAATCAACCTTCAGAGAGCCGTCAGACGTTAGGATCAGCTGGCCTCTCGCTGCACTATGCCAATATCATTTCACAGATTGACAACATTGTTTCCCGAAGCACCGTTCCACCACAAAGCACAAGAGATGCGCTCTATCAAGGACTGCCCCCAACTATTAAGTCTGCTCTTCGAAAAAAACTACATAATTGCCCACAACCACAAGAGGTTCCGATCACTGAAATCAGATCTTCAATGGAGAGAACCTTGCAATGGATTATCCCTATTGCCAACAATACAGCCAGAGCTCACCATGGATTCGGATGGGTCGGCGAGTGGGCGAACACAGGGAACGATGCGATGCGGAGGGCGGCTGGGCAGCCAGACGTGATCAAGATCGAGACATTCTACCATGCGGACAAGGCCAAGACGGAGGCGTGCATCCTGGACCTCGTCCTGTGGCTTCACCACCTCATCAGCTACAGCCGCCCAAGCAACGGTGGCAGGTCCAGGTCGCCGAGCAGGTCGCCGGTGCGCTCCCCTCCCCTCACGCCGCCGCACCAGGTGCCGACGACGACGTCGTCGTCCTCGCCGCCACCGCCGGCGGTGGCGAGGCCGAGCGGCGGCACCGGCGGT GGCCTCACCAGGGAGGACCGCGCGATGCTCCAGGACGTGTACGCGGGCCGCCGGCGTCGCGCTCCCTGTCACAGCAGGAGCCAGGAGCTGTCGTCAGCTCGCGGCGGCGGCGGCGCCGGCGGCGACAGCTCGTCGGCGGTGGCAGCCGCGGCGCAGCTGAGCAAGAACGACAGGCTGAGCAAGAGCAGCAACGATGCTCCGGCGCGGAGCGGCGGCGGCGGCGGCGGCGGGAAGCTCTTCCCGCTGAGCAGGAGGCCCTCCTCCGCCGTGGTGTCGCCCGCCGTCGACTTCGACATCGACGGCATCAAGGCGCTGGCGGATGCACAGAAGCGGCAGTGACCGTGACGTCACAGCCACCATCTTCTTCTCCGCCGCAAATTTTGCTCAAACTGTCCACTGCTCAAACGCAGCGACGCCGGAAAACCGTGAGAAAAAATAAGAGAAAAAAAATCAAGAAAGAAATGGAGATGGCCAGATGATGAGAAACCAAGATCGGTGATGGATGCTTAATTAGGGTGTGATTGATACATGATCAATTAATTAATTAATCGCCATTGTAT                  ]
[-] EMBL BI305463             [                                                                                                                                                                                                                                                                                                                                                                                      GACG TGGGATCAGCTGGCCTCTCGCTGCACTATGCCAATATCATCTCACAGATTGACAACATTGTTTCCCGAAGCACCGTTCCACCACAAAGCACAAGAGATGCGCTCTATCAAGGACTGCCCCCAACTATTAAGTCTGCTCTTCGAAAAAAACTACATAATTGCCCACAACCACAAGAGGTTCCGATCACTGAAATCAGATCTTCAATGGAGAGAACCTTGCAATGGATTATCCCTATTGCCAACAATACAGCCAGAGCTCACCATGGATTCGGATGGGTCGGCGAGTGGGCGAACACAGGGAACGATGCGATGCGGAGGGCGGCTGGGCAGCCAGACGTGATCAAGATCGAGACATTCTACCATGCGGACAAGGCCAAGACGGAGGCGTGCATCCTGGACCTCGTCCTGTGGCTTCACCACCTCATCAGCTACAGCCGCCCAAGCAACGGTGGCAGGTCCAGGTCGCCGAGCAGGTCGCCGGTGCGCTCCCCTCCCCTCACGCCGCCGCACCAGGTGCCGACGACGACGTCGTCGTCCTCGCCGCCACCGCCGGCGGTGGCGAGGCCGAGCGGCGGCACCGGCGGT GGCCTCACCAGGGAGGACCGCGCGATGCTCCAGGACGTGTACGCGGGCCGCCGGCGTCGCGCTCCCGGTCACAGCAGGAGCCAGGAGCTGTCGTCGGCTCGCGGCGGCGGCGGCGCCGGCGGCGACAGCTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CB673464             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CCGGCGGTGGGCCTCACCAGGGAGGACCGCGCGATGCTCCAGGACGTGTACGCGGGCCGCCGGCGTCGCGCTCCCTGTCACAGCAGGAGCCAGGAGCTGTTGTCAGCTCGCGGCGGCGGCGGCGCCGGCGGCGACAGCTTGTCGGCGGTGGCAGCCGCGGCGCAGCTGAGCAAGAACGACAGGCTGAGCAAGAGCAGCAACGATGCTCCGGCGCGGAGCGGCGGCGGCGGCGGCGGCGGGAAGCTCTTCCCGCTGAGCAGGAGGCCCTCCTCCGCCGTGGTGTCGCCCGCCGTCGACTTCGACATCGACGGCATCAAGGCGCTGGCGGATGCACAGAAGCGGCAGTGACCGTGACGTCACAGCCACCATCTTTTTTTCCGCCGCAAATTTTGCTCAAACTGTCCACTGCTCAAACGCAGCGACGCCGGAAAACCGTGAGAAAAAATAAGAGAAAAAAAATCAAGAAAGAAATGGAGATGGCCAGATGATGAGAAACCAAGATCGGTGATGGATGCTTAATTAGGGTGTGATTGATACATGATCAATTAATTAATTAATCGCCAATGTATATTGTACGTATAAGGGAG]




>consensus_8463#0
CTCAACCAAACTTGAAAGAAATAGCAGAAGCAGAGATGCAGCAATTGTTGACACTGGTTC
GGCACACGGCTGATCTGTACCATGAGTTGCATGCATTAGATAGATTTGAGCAAGATTATC
GCCGTAAATTGGAGGAAGAGAAAAAATCAGTTGCTTTTGAAAGAGGGGACACTGTTCAGA
TTATAAGGCAAGAATTGAAGAGCCAAAGGAGGCATGTGAAAAGCTTGAAGAAAAAGTCCC
TTTGGAATAAGATGCTCGAAGACGTCATGGATAAACTTGTGGATATTGTCCACTTTTTAC
ATGTAGAGATTCAAGAATCTTTTGGGCCCTATGATGGAGCTTTACAATTGAATCAACCTT
CAGAGAGCCGTCAGACGTTAGGATCAGCTGGCCTCTCGCTGCACTATGCCAATATCATTT
CACAGATTGACAACATTGTTTCCCGAAGCACCGTTCCACCACAAAGCACAAGAGATGCGC
TCTATCAAGGACTGCCCCCAACTATTAAGTCTGCTCTTCGAAAAAAACTACATAATTGCC
CACAACCACAAGAGGTTCCGATCACTGAAATCAGATCTTCAATGGAGAGAACCTTGCAAT
GGATTATCCCTATTGCCAACAATACAGCCAGAGCTCACCATGGATTCGGATGGGTCGGCG
AGTGGGCGAACACAGGGAACGATGCGATGCGGAGGGCGGCTGGGCAGCCAGACGTGATCA
AGATCGAGACATTCTACCATGCGGACAAGGCCAAGACGGAGGCGTGCATCCTGGACCTCG
TCCTGTGGCTTCACCACCTCATCAGCTACAGCCGCCCAAGCAACGGTGGCAGGTCCAGGT
CGCCGAGCAGGTCGCCGGTGCGCTCCCCTCCCCTCACGCCGCCGCACCAGGTGCCGACGA
CGACGTCGTCGTCCTCGCCGCCACCGCCGGCGGTGGCGAGGCCGAGCGGCGGCACCGGCG
GTGGCCTCACCAGGGAGGACCGCGCGATGCTCCAGGACGTGTACGCGGGCCGCCGGCGTC
GCGCTCCCTGTCACAGCAGGAGCCAGGAGCTGTCGTCAGCTCGCGGCGGCGGCGGCGCCG
GCGGCGACAGCTCGTCGGCGGTGGCAGCCGCGGCGCAGCTGAGCAAGAACGACAGGCTGA
GCAAGAGCAGCAACGATGCTCCGGCGCGGAGCGGCGGCGGCGGCGGCGGCGGGAAGCTCT
TCCCGCTGAGCAGGAGGCCCTCCTCCGCCGTGGTGTCGCCCGCCGTCGACTTCGACATCG
ACGGCATCAAGGCGCTGGCGGATGCACAGAAGCGGCAGTGACCGTGACGTCACAGCCACC
ATCTTCTTCTCCGCCGCAAATTTTGCTCAAACTGTCCACTGCTCAAACGCAGCGACGCCG
GAAAACCGTGAGAAAAAATAAGAGAAAAAAAATCAAGAAAGAAATGGAGATGGCCAGATG
ATGAGAAACCAAGATCGGTGATGGATGCTTAATTAGGGTGTGATTGATACATGATCAATT
AATTAATTAATCGCCATTGTATATTGTACGTATAAGGGAG

consensusID : consensus_8463#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 356
fasta sequence

                              [GATCGGTGATGGATGCTTAATTAGGGTGTGATTGATACATGNTCAATTAATTAATTAATCGCCNTTGTATATTGTAGGAGAAAGAAAGAAAGAAAAATAGATGGATAGATAGCCCAAGAATTGCAGCTGTCAGGTACTGTACTACCATNAGACAATCATGGATGGACATGTTATATAGTACTCCAGCTGTGCAATGCCTGAAGACTAGTAGTACTACTACATATATCAACAGACTNTGCAGGCACATATANATAGTGACCAAAAACCCTCCTGCTTGTGAATTTTCAACCCTTNTTGTCTTGGAATGGAATGCCCAGTTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU181229             [GATCGGTGATGGATGCTTAATTAGGGTGTGATTGATACATGNTCAATTAATTAATTAATCGCCNTTGTATATTGTAGGAGAAAGAAAGAAAGAAAAATAGATGGATAGATAGCCCAAGAATTGCAGCTGTCAGGTACTGTACTACCATNAGACAATCATGGATGGACATGTTATATAGTACTCCAGCTGTGCAATGCCTGAAGACTAGTAGTACTACTACATATATCAACAGACTNTGCAGGCACATATANATAGTGACCAAAAACCCTCCTGCTTGTGAATTTTCAACCCTTNTTGTCTTGGAATGGAATGCCCAGTTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_8463#1
GATCGGTGATGGATGCTTAATTAGGGTGTGATTGATACATGNTCAATTAATTAATTAATC
GCCNTTGTATATTGTAGGAGAAAGAAAGAAAGAAAAATAGATGGATAGATAGCCCAAGAA
TTGCAGCTGTCAGGTACTGTACTACCATNAGACAATCATGGATGGACATGTTATATAGTA
CTCCAGCTGTGCAATGCCTGAAGACTAGTAGTACTACTACATATATCAACAGACTNTGCA
GGCACATATANATAGTGACCAAAAACCCTCCTGCTTGTGAATTTTCAACCCTTNTTGTCT
TGGAATGGAATGCCCAGTTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8463#0      CTCAACCAAACTTGAAAGAAATAGCAGAAGCAGAGATGCAGCAATTGTTGACACTGGTTC 60
consensus_8463#1      ------------------------------------------------------------
                                                                                  

consensus_8463#0      GGCACACGGCTGATCTGTACCATGAGTTGCATGCATTAGATAGATTTGAGCAAGATTATC 120
consensus_8463#1      ------------------------------------------GATCGGTGATGGATGCTT 18
                                                                ***  * *   ***  * 

consensus_8463#0      GCCGTAAATTGGAGGAAGAGAAAAAATCAGTTGCTTTTGAAAGAGGGGACACTGTTCAGA 180
consensus_8463#1      A--ATTAGGGTGTGATTGATACATGNTCAATTAATT---AATTAATCGCCNTTGT--ATA 71
                          * *    * *   ** * *   *** **  **   **  *   * *  ***  * *

consensus_8463#0      TTATAAGGCAAGAATTGAAGAGCCAAAGGAGGCATGTGAAAAGCTTGAAGAAAAAGTCCC 240
consensus_8463#1      TTGTAGGAGAAAGAAAGAAAGA--AAAATAGATGGATAGATAGCCCAAGAATTGCAGCTG 129
                      ** ** *  **  *  ***     ***  **     *  * ***   *  *      *  

consensus_8463#0      TTTGGAATAAGA-TGCTCGAAGACG-TCATGGATAAACTTGTGGATATTGTCCACTTTTT 298
consensus_8463#1      TCAGGTACTGTACTACCATNAGACAATCATGGATGGACATGTT-ATATAGT--ACTCCAG 186
                      *  ** *    * * *    ****  ********  ** ***  **** **  ***    

consensus_8463#0      ACATGTAGAGATTCAAGAATCTTTTGGGCCCTATGATGGAGCTTTACAATTGAATCAACC 358
consensus_8463#1      CTGTGCAATGCCTGAAGACTAGT---AGTACTACTACATA---TATCAACAGACTNTGCA 240
                         ** *  *  * **** *  *    *  ***  *   *   *  ***  ** *   * 

consensus_8463#0      TTCAGAGAGCCGTCAGACGTTAGGATCAGCTGGCCTCTCGCTGCACTATGCCAATATCAT 418
consensus_8463#1      GGCACATATANATAGTGACCAAAAACCCTCCTGCTTGTGAATTTTCAA--CCCTTNTTGT 298
                        ** * *    *        *  * *  *  ** * *   *   * *  **  * *  *

consensus_8463#0      TTCACAGATTGACAACATTGTTTCCCGAAGCACCGTTCCACCACAAAGCACAAGAGATGC 478
consensus_8463#1      CTTGGA-ATGGAATGCCCAGTTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA- 356
                       *   * ** **   *   ******* **  *       *  * ***  * ** * *   

consensus_8463#0      GCTCTATCAAGGACTGCCCCCAACTATTAAGTCTGCTCTTCGAAAAAAACTACATAATTG 538
consensus_8463#1      ------------------------------------------------------------
                                                                                  

consensus_8463#0      CCCACAACCACAAGAGGTTCCGATCACTGAAATCAGATCTTCAATGGAGAGAACCTTGCA 598
consensus_8463#1      ------------------------------------------------------------
                                                                                  

consensus_8463#0      ATGGATTATCCCTATTGCCAACAATACAGCCAGAGCTCACCATGGATTCGGATGGGTCGG 658
consensus_8463#1      ------------------------------------------------------------
                                                                                  

consensus_8463#0      CGAGTGGGCGAACACAGGGAACGATGCGATGCGGAGGGCGGCTGGGCAGCCAGACGTGAT 718
consensus_8463#1      ------------------------------------------------------------
                                                                                  

consensus_8463#0      CAAGATCGAGACATTCTACCATGCGGACAAGGCCAAGACGGAGGCGTGCATCCTGGACCT 778
consensus_8463#1      ------------------------------------------------------------
                                                                                  

consensus_8463#0      CGTCCTGTGGCTTCACCACCTCATCAGCTACAGCCGCCCAAGCAACGGTGGCAGGTCCAG 838
consensus_8463#1      ------------------------------------------------------------
                                                                                  

consensus_8463#0      GTCGCCGAGCAGGTCGCCGGTGCGCTCCCCTCCCCTCACGCCGCCGCACCAGGTGCCGAC 898
consensus_8463#1      ------------------------------------------------------------
                                                                                  

consensus_8463#0      GACGACGTCGTCGTCCTCGCCGCCACCGCCGGCGGTGGCGAGGCCGAGCGGCGGCACCGG 958
consensus_8463#1      ------------------------------------------------------------
                                                                                  

consensus_8463#0      CGGTGGCCTCACCAGGGAGGACCGCGCGATGCTCCAGGACGTGTACGCGGGCCGCCGGCG 1018
consensus_8463#1      ------------------------------------------------------------
                                                                                  

consensus_8463#0      TCGCGCTCCCTGTCACAGCAGGAGCCAGGAGCTGTCGTCAGCTCGCGGCGGCGGCGGCGC 1078
consensus_8463#1      ------------------------------------------------------------
                                                                                  

consensus_8463#0      CGGCGGCGACAGCTCGTCGGCGGTGGCAGCCGCGGCGCAGCTGAGCAAGAACGACAGGCT 1138
consensus_8463#1      ------------------------------------------------------------
                                                                                  

consensus_8463#0      GAGCAAGAGCAGCAACGATGCTCCGGCGCGGAGCGGCGGCGGCGGCGGCGGCGGGAAGCT 1198
consensus_8463#1      ------------------------------------------------------------
                                                                                  

consensus_8463#0      CTTCCCGCTGAGCAGGAGGCCCTCCTCCGCCGTGGTGTCGCCCGCCGTCGACTTCGACAT 1258
consensus_8463#1      ------------------------------------------------------------
                                                                                  

consensus_8463#0      CGACGGCATCAAGGCGCTGGCGGATGCACAGAAGCGGCAGTGACCGTGACGTCACAGCCA 1318
consensus_8463#1      ------------------------------------------------------------
                                                                                  

consensus_8463#0      CCATCTTCTTCTCCGCCGCAAATTTTGCTCAAACTGTCCACTGCTCAAACGCAGCGACGC 1378
consensus_8463#1      ------------------------------------------------------------
                                                                                  

consensus_8463#0      CGGAAAACCGTGAGAAAAAATAAGAGAAAAAAAATCAAGAAAGAAATGGAGATGGCCAGA 1438
consensus_8463#1      ------------------------------------------------------------
                                                                                  

consensus_8463#0      TGATGAGAAACCAAGATCGGTGATGGATGCTTAATTAGGGTGTGATTGATACATGATCAA 1498
consensus_8463#1      ------------------------------------------------------------
                                                                                  

consensus_8463#0      TTAATTAATTAATCGCCATTGTATATTGTACGTATAAGGGAG 1540
consensus_8463#1      ------------------------------------------