|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8517#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1389 fasta sequence
[ATGAATGTTAAGCGTGTAATTTTTTAGATTAGTCGTGATTCATTGTCATTGGATTTGTGATACCGCTAATATGATGACATTTGGAAAATCTAGCACCTATAACCTATGTGATATTCTCAACCAGCACACATCTAGTGTTCGGTAGTAGTGGTCGTTGCGGTCCCCGTCGGCCACCTCACCTTCGGCGAGAGAGCCGGCGAGACGACCATCACGCCTGGGCTACCGACGGTGTCCGCCGCCGCAGCGTCGTGGGTGTGGCCGTCACCGACGAAGCCCGGGCAGAGCATCTCCAGCTCTTCCAAGCACACCGGCCGCGACAGCAGCTTCACCACCTGCCGCATCGTCGGCCGGCTGCACGGCTTCGCCTGCGTGCAGGCCAGCGCCACCTTGATGAACTTGAGCGCCTCCTCCTCCGGGTAACCTCCCTTCATGCTCGGATCCACCATGTCCAGCAGGCTGCCCTGTTCGTGCAGCATCCACGCCTGCCGCACGAGAAACATGCCTGATCGAATGGTCTGCGACATCCTCCTTCCACTGATGATCTCAAGAATGAGCACTCCGAAGCTGTAGACATCTGCCTTCTTCGTCAGCTGTCCGTGCACGACGTATTCAGGTGCCATGTAGCCAGTTGTCCCAATCACACGTGTGCTAACATGACTAACATTGTCCGGGAACAGCTTGGCAATTCCAAAGTCTCCGATTTTTGGGATGTAGTTTCTGTCAAGGAGAACGTTGCTAGCCTTGATGTCTCTGTGCACAATGCTTGGCTCGTGCTCTTCGTGAAGATAGCTCAGTCCCTTGGCCACTCCCATACAGATGTCCGATCTTGTGCTCCAGCTGAGGTCAGTTACTCCAGCAGCTGAACCCTGCAATGCATTGTCAAGGCTGTTGTTCTCGACGTACTCGTAAATCAGGATCCTGTTTTGCCTCTGAACACAGCAGCCCAGCAACCTGACAAGGTTTGCGTGCTTAGCTTCAGTAATGCTCTCGATTTCGGTCAGGAATTCGTTGATCCCTTGTTCAGATTCAGCAGACAGAACCTTTGCAGCAAATGCAGTACCATCTTCAAAAGTTCCCTTGTACACAGTTCCAAATCCACCTCGGCCTATCTTGTTGCCATCGTCGAAGTTGTTTGTTGCTGCTCTGATCTCTCTATAGGAGAATAGCTGGACATTTTTCAAGTTCAGAAGCTCTTTGATATCTTCTTGGGATCCACAGAAGCATCTCTTCATCAGAGCCATCTTTCAAGCTGGAGCTGTGACCTGGATTCCTGGAGCAATCCTCTCTTTCTCAGGCCAAACGGGAGCTCCAAAAGAAAGGCCAAGAATTTGTTGAAGTGAGAGGAACAGGGTTTCCAAGCGAGCATTAAATCTTCAGAGGTGTGGAACG]
[+] EMBL CB658940 [ATGAATGTTAAGCGTGTAATTTTTTAGATTAGTCGTGATTCATTGTCATTGGATTTGTGATACCGCTAATATGATGACATTTGGAAAATCTAGCACCTATAACCTATGTGATATTCTCAACCAGCACACATCTAGTGTTCGGTAGTAGTGGTCGTTGCGGTCCCCGTCGGCCACCTCACCTTCGGCGAGAGAGCCGGCGAGACGACCATCACGCCTGGGCTACCGACGGTGTCCGCCGCCGCAGCGTCGTGGGTGTGGCCGTCACCGACGAAGCCCGGGCAGAGCATCTCCAGCTCTTCCAAGCACACCGGCCGCGACAGCAGCTTCACCACCTGCCGCATCGTCGGCCGGCTGCACGGCTTCGCCTGCGTGCAGGCCAGCGCCACCTTGATGAACTTGAGCGCCTCCTCCTCCGGGTAACCTCCCTTCATGCTCGGATCCACCATGTCCAGCAGGCTGCCCTGTTCGTGCAGCATCCACGCCTGCCGCACGAGAAACATGCCTGATCGAATGGTCTGCGACATCCTCCTTCCACTGATGATCTCAAGAATGAGCACTCCGAAGCTGTAGACATCTGCCTTCTTCGTCAGCTGTCCGTGCACGACGTATTCAGGTGCCATGTAGCCAGTTGTCCCAATCACACGTGTGCTAACATGACTAACATTGTCCGGGAACAGCTTGGCAATTCCAAAGTCTCCGATTTTTGGGATGTAGTTTCTGTCAAGGAGAACGTTGCTAGCCTTGATGTCTCTGTGCACAATGCTTGGCTCGTGCTCTTCGTGAAGATAGCTCAGTCCCTTGG ]
[+] EMBL CB658969 [ ATTTGTGATAACGATAATATGATGAAATTTGGAAAATCTAGCACCTATAACCTCTGAGAGATTCTCAACCAGCACACATCTAGTGTTCGGTAGTAGTGGTCGTTGCGGTCCCCGTCGGCCACCTCACCTTCGGAGAGAGAGCCGGCGAGACGACCATCACGCCTGGGCTACCGACGGTGTCCGCCGCCGCAGCGTCGTGGGTGTGGCCGTCACCGACGAAGCCCGGGCAGAGCATCTCCAGCTCTTCCAAGCACACCGGCCGCGACAGTTTTTTCACCACCTGCCGGATCGTCGGCCGGCTGCACGGCTTCTCCTGCGTGCAGGCCAGCGCCACCTTGATGAACTTGAGCGCCTCCTCCTCCGGGTAACCTCCCTTCATGCTCGGATCCACCATGTCCAGCAGGCTGCCCTGTTCGTGCAGCATCCACGCCTGGCGCACGAGAAACATGCCTGATCGAATGGTCTGCGACATCCTCCTTCCACTGATGATCTCAAGAATGATCACTCCGAAGCTGTAGACATCTGCCTTCTTCATCAGCTGTCCGAGCACGACGTATTCAGGTGCCATGTAGCCAGTTGTCCCAATCACACGTGTG ]
[-] EMBL CB658939 [ AGCCAGTTGTCCCAATCACACGTGTGCTAACATGACTAACATTGTCCGGGAACAGCTTGGCAATTCCAAAGTCTCCGATTTTTGGGATGTAGTTTCTGTCAAGGAGAACGTTGCTAGCCTTGATGTCTCTGTGCACAATGCTTGGCTCGTGCTCTTCGTGAAGATAGCTCAGTCCCTTGGCCACTCCCATACAGATGTCCGATCTTGTGCTCCAGCTGAGGTCAGTTACTCCAGCAGCTGAACCCTGCAATGCATTGTCAAGGCTGTTGTTCTCGACGTACTCGTAAATCAGGATCCTGTTTTGCCTCTGAACACAGCAGCCCAGCAACCTGACAAGGTTTGCGTGCTTAGCTTCAGTAATGCTCTCGATTTCGGTCAGGAATTCGTTGATCCCTTGTTCAGATTCAGCAGACAGAACCTTTGCAGCAAATGCAGTACCATCTTCAAAAGTTCCCTTGTACACAGTTCCAAATCCACCTCGGCCTATCTTGTTGCCATCGTCGAAGTTGTTTGTTGCTGCTCTGATCTCTCTATAGGAGAATAGCTGGACATTTTTCAAGTTCAGAAGCTCTTTGATATCTTCTTGGGATCCACAGAAGCATCTCTTCATCAGAGCCATCTTTCAAGCTGGAGCTGTGACCTGGATTCCTGGAGCAATCCTCTCTTTCTCAGGCCAAACGGGAGCTCCAAAAGAAAGGCCAAGAATTTGTTGAAGTGAGAGGAACAGGGTTTCCAAGCGAGCATTAAATCTTCAGAGGTGTGGAACG]
[-] EMBL CB658941 [ gcCGTACTCTTAAATCAGGATCCTGTTTTGCCTCTGAACACAGCAGCCCAGCAACCTGACAAGGTTTGCGTGCTTAGCTTCAGTAATGCTCTCGATTTCGTTCAGGAATTCGTTGATCCCTTGTTCAGATTCAGCAGACAGAACCTTTGCAGCAAATGCAGTACCATCTTCAAAAGTTCCCTTGTACACAGTTCCAAATCCACCTCGGCTTATCTTGTTGCCATCGTGGAAGTTGTTTGTTGCTGCTTTGATCTTTTTATACCAGAATATCTGGACATTTTTCAAGTTCAGAAcc ]
consensusID : consensus_8517#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence
[TTTTTTGGGTTCGAAGCTTAACTTTTTTTTTTATCATTCTTGCAACCTCAAATGAGTCGATTCGTTGTTTCTCCCCATAGGTACCGCTAATATGATGACAGTTGGAAAATCCAGAACCTATGTAAGATTCCCAGAACCAGCACACATCAGTGTTCGGTACTTATGGCCGTTGCGGTCCCCGTCGGCCACCTCATCTTCGGCGAGAGAGCCGGCGAGACGACCATCACGCCTGGGCTACCGACGGTGTCCGCCGCCGCTGCATCGTGGGTGTGGCCGTCACCGACGAAGCCCGGGCAGAGCATCTCCAGCTCTTCCAAGCACACCGGCCGCGACAGCAGCTTCACCACCTGCCGCATCGTCGGCGGCTGCACGGCTTCGCCTGCGTGCAGGCCAGCGCCACCTTGATGAACTTGAGCGCCTCCTCCTCCGGGTAACCTCCCTTCATGCTCGGATCCACCATGTCCAGCAGGCTGTCCTGTTCGTGCAGCACCACGCCTGCCGCACGAGAAAACATGTCTGATCGAATGGTCTGGGAATCCTCCTTCCACTGATGA]
[-] EMBL BI813676 [TTTTTTGGGTTCGAAGCTTAACTTTTTTTTTTATCATTCTTGCAACCTCAAATGAGTCGATTCGTTGTTTCTCCCCATAGGTACCGCTAATATGATGACAGTTGGAAAATCCAGAACCTATGTAAGATTCCCAGAACCAGCACACATCAGTGTTCGGTACTTATGGCCGTTGCGGTCCCCGTCGGCCACCTCATCTTCGGCGAGAGAGCCGGCGAGACGACCATCACGCCTGGGCTACCGACGGTGTCCGCCGCCGCTGCATCGTGGGTGTGGCCGTCACCGACGAAGCCCGGGCAGAGCATCTCCAGCTCTTCCAAGCACACCGGCCGCGACAGCAGCTTCACCACCTGCCGCATCGTCGGCGGCTGCACGGCTTCGCCTGCGTGCAGGCCAGCGCCACCTTGATGAACTTGAGCGCCTCCTCCTCCGGGTAACCTCCCTTCATGCTCGGATCCACCATGTCCAGCAGGCTGTCCTGTTCGTGCAGCACCACGCCTGCCGCACGAGAAAACATGTCTGATCGAATGGTCTGGGAATCCTCCTTCCACTGATGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8517#0 --------------------------ATGAATGTTAAGCGTGTAATTTTTTAGATTAGTC 34
consensus_8517#1 TTTTTTGGGTTCGAAGCTTAACTTTTTTTTTTATCATTCTTGCAACCTC--AAATGAGTC 58
* * * * * ** ** * * ** ****
consensus_8517#0 GTGATTCATTGTCATTGGATTTGTGATACCGCTAATATGATGACATTTGGAAAATCTAGC 94
consensus_8517#1 G--ATTCGTTGTTTCTCCCCATA-GGTACCGCTAATATGATGACAGTTGGAAAATCCAG- 114
* **** **** * * * ******************* ********** **
consensus_8517#0 ACCTATAACCTATGTGATATTCTCA--ACCAGCACACATCTAGTGTTCGGTAGTAGTGGT 152
consensus_8517#1 ------AACCTATGTAAGATTCCCAGAACCAGCACACATC-AGTGTTCGGTACTTATGGC 167
********* * **** ** ************* *********** * ***
consensus_8517#0 CGTTGCGGTCCCCGTCGGCCACCTCACCTTCGGCGAGAGAGCCGGCGAGACGACCATCAC 212
consensus_8517#1 CGTTGCGGTCCCCGTCGGCCACCTCATCTTCGGCGAGAGAGCCGGCGAGACGACCATCAC 227
************************** *********************************
consensus_8517#0 GCCTGGGCTACCGACGGTGTCCGCCGCCGCAGCGTCGTGGGTGTGGCCGTCACCGACGAA 272
consensus_8517#1 GCCTGGGCTACCGACGGTGTCCGCCGCCGCTGCATCGTGGGTGTGGCCGTCACCGACGAA 287
****************************** ** **************************
consensus_8517#0 GCCCGGGCAGAGCATCTCCAGCTCTTCCAAGCACACCGGCCGCGACAGCAGCTTCACCAC 332
consensus_8517#1 GCCCGGGCAGAGCATCTCCAGCTCTTCCAAGCACACCGGCCGCGACAGCAGCTTCACCAC 347
************************************************************
consensus_8517#0 CTGCCGCATCGTCGGCCGGCTGCACGGCTTCGCCTGCGTGCAGGCCAGCGCCACCTTGAT 392
consensus_8517#1 CTGCCGCATCGTCGGC-GGCTGCACGGCTTCGCCTGCGTGCAGGCCAGCGCCACCTTGAT 406
**************** *******************************************
consensus_8517#0 GAACTTGAGCGCCTCCTCCTCCGGGTAACCTCCCTTCATGCTCGGATCCACCATGTCCAG 452
consensus_8517#1 GAACTTGAGCGCCTCCTCCTCCGGGTAACCTCCCTTCATGCTCGGATCCACCATGTCCAG 466
************************************************************
consensus_8517#0 CAGGCTGCCCTGTTCGTGCAGCATCCACGCCTGCCGCACGAGAAA-CATGCCTGATCGAA 511
consensus_8517#1 CAGGCTGTCCTGTTCGTGCAGCA-CCACGCCTGCCGCACGAGAAAACATGTCTGATCGAA 525
******* *************** ********************* **** *********
consensus_8517#0 TGGTCTGCGACATCCTCCTTCCACTGATGATCTCAAGAATGAGCACTCCGAAGCTGTAGA 571
consensus_8517#1 TGGTCTGGGA-ATCCTCCTTCCACTGATGA------------------------------ 554
******* ** *******************
consensus_8517#0 CATCTGCCTTCTTCGTCAGCTGTCCGTGCACGACGTATTCAGGTGCCATGTAGCCAGTTG 631
consensus_8517#1 ------------------------------------------------------------
consensus_8517#0 TCCCAATCACACGTGTGCTAACATGACTAACATTGTCCGGGAACAGCTTGGCAATTCCAA 691
consensus_8517#1 ------------------------------------------------------------
consensus_8517#0 AGTCTCCGATTTTTGGGATGTAGTTTCTGTCAAGGAGAACGTTGCTAGCCTTGATGTCTC 751
consensus_8517#1 ------------------------------------------------------------
consensus_8517#0 TGTGCACAATGCTTGGCTCGTGCTCTTCGTGAAGATAGCTCAGTCCCTTGGCCACTCCCA 811
consensus_8517#1 ------------------------------------------------------------
consensus_8517#0 TACAGATGTCCGATCTTGTGCTCCAGCTGAGGTCAGTTACTCCAGCAGCTGAACCCTGCA 871
consensus_8517#1 ------------------------------------------------------------
consensus_8517#0 ATGCATTGTCAAGGCTGTTGTTCTCGACGTACTCGTAAATCAGGATCCTGTTTTGCCTCT 931
consensus_8517#1 ------------------------------------------------------------
consensus_8517#0 GAACACAGCAGCCCAGCAACCTGACAAGGTTTGCGTGCTTAGCTTCAGTAATGCTCTCGA 991
consensus_8517#1 ------------------------------------------------------------
consensus_8517#0 TTTCGGTCAGGAATTCGTTGATCCCTTGTTCAGATTCAGCAGACAGAACCTTTGCAGCAA 1051
consensus_8517#1 ------------------------------------------------------------
consensus_8517#0 ATGCAGTACCATCTTCAAAAGTTCCCTTGTACACAGTTCCAAATCCACCTCGGCCTATCT 1111
consensus_8517#1 ------------------------------------------------------------
consensus_8517#0 TGTTGCCATCGTCGAAGTTGTTTGTTGCTGCTCTGATCTCTCTATAGGAGAATAGCTGGA 1171
consensus_8517#1 ------------------------------------------------------------
consensus_8517#0 CATTTTTCAAGTTCAGAAGCTCTTTGATATCTTCTTGGGATCCACAGAAGCATCTCTTCA 1231
consensus_8517#1 ------------------------------------------------------------
consensus_8517#0 TCAGAGCCATCTTTCAAGCTGGAGCTGTGACCTGGATTCCTGGAGCAATCCTCTCTTTCT 1291
consensus_8517#1 ------------------------------------------------------------
consensus_8517#0 CAGGCCAAACGGGAGCTCCAAAAGAAAGGCCAAGAATTTGTTGAAGTGAGAGGAACAGGG 1351
consensus_8517#1 ------------------------------------------------------------
consensus_8517#0 TTTCCAAGCGAGCATTAAATCTTCAGAGGTGTGGAACG 1389
consensus_8517#1 --------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||