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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8525#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1750 fasta sequence
[CCCACTCCGTCGTCTTCCCCGGAAACGGTCACGCGACTCGCGAGCTCCCGCCGCCGCCGCCGCCGTCGCCGTCGCCGTCGCGGCCTCCCACCTCTCCCTCTACCCCACCACACTCGCCGCCGGCGAGGCCTGACGGCGATCCCCAACACTGCCCCCCGGCGGCTGCCGTTGGATCGTGGGAGGGAGGATTGGCCGGTTGTACTACAGTTGAGGGAGGGAGGAGCTACCGTTTGTGATCCGCCGCCTGCGACCGAGCGTCCCCGTAGTTAGATCCGGCTCGACCACCACGGCCTCCGGCGCTCTGAGCGGCTGCTCTGTGTGAGAGGCCCTGCTGCTGAAAGAGAATCCATGGCCGCGGCGAGCGGACCGTGGCTGCTCGTCGTGGTCGTGGCTTGGGTCTTGGGCGTTGCGGCCGCCTCGTCGTCGTCGTCATCGCCTGGGCAGGCAGGTACCAGCCAGAAATTCAACAAGTGTATGCCGTGCTCTAGGAGATATGTCGCTGATTCATACCTCGATACCTTGATCGGCCAGCTTGCTCAACATCGTGACTTGACTGAAACATCTGATTCTGCTGACTCATGCAAAGGACTTGATTATGATCTTGATGCACCCATGCTTACAGAATTGCACTCGGAACTGGTTGGTGAAGGTTCTCATCGCCGTCTAGTCTATCATGTGGAATTTGCTAACTGTGCAGATGCTATGGTTAATTTCCTTGATAACTATGATGCCAATCTGGTGGTAATAGAAAATCTCCCGAATGGTGTGTTTGCTGACCCATTTGAGCTACAACATTTTGTTGAGCGGAAAGTATATCTTGATATGGTTGTTTTCGGAGACACCAACCTTGAACTGCCTTCGGCTCTATCCAACCGGTCATCTGTGGAAATCCATGTTGATCTCGCACCACTTGCATCGATGAACTGTAACCTTGTAATAGACCTGCCTCTCCATGCTAGATACCCACCTCTTGATGCCAGTGGTTATGCGACGGTTGAGTTTGGTAGCCCAGATCTGCTTCTACGTTACAGAAAGAAGGATACTGTTCCTGAATCCTGCTCATGGTTGCTTAAAGATCTTGATGCTGCACCTGTGGAGAAAGCTACATGGCGCATACCCTGTGGAGACGAAGCGCACATAGGATTTGTATCTAGTATCACTTTTCTTTCAGCTCTAGTTTGCTCAATTTTAATAGTCATAGCTGCCCTATTTTATTGATGTCAAAACTGAAATGCAAGACAAGTTGGATTATTTCGTCCAAATCAAAATATGTTATGTGATTACTTTTTCAGACATTTATAACCCCATTATCTTGTTCATGTCTAGAACACAATCAAAGGGAAAGTTCTTTGCAGTTGAAGTTGCGAACCTGCAGTTGCCTGACCACTGATAACTGACCAGGGCATCTGCCTGCAACATCACAAGGAGTTATAAAAGGAAAAGAATAATTTCCTTCATGAGGGCAGGAAGGAATGCCCAGTTGTTGAATTCTGAGTTGATCTGGATCAGAAGCTACCCTATTTTATTGTCTTGGAAGCAGCCAAGCAGGTGAAGCATGAATTGGAAGCTTGTGTTAACAACTGTACTCCTTTTGTCTTTGCACGCTTAATAGACTGGCACAGACAGTCATTCTCTGGTTATAAAAATCCAGAGCTGTCCCATTTTTAATTTCAGTAAGGCAGCATGCTACCCCAGGATCAGGTGAGCAGTTCTGTTCTGTCTGACAGACTGGATCTGTTGGGTGACAAAA]
[+] EMBL AK100450 [CCCACTCCGTCGTCTTCCCCGGAAACGGTCACGCGACTCGCGAGCTCCCGCCGCCGCCGCCGCCGTCGCCGTCGCCGTCGCGGCCTCCCACCTCTCCCTCTACCCCACCACACTCGCCGCCGGCGAGGCCTGACGGCGATCCCCAACACTGCCCCCCGGCGGCTGCCGTTGGATCGTGGGAGGGAGGATTGGCCGGTTGTACTACAGTTGAGGGAGGGAGGAGCTACCGTTTGTGATCCGCCGCCTGCGACCGAGCGTCCCCGTAGTTAGATCCGGCTCGACCACCACGGCCTCCGGCGCTCTGAGCGGCTGCTCTGTGTGAGAGGCCCTGCTGCTGAAAGAGAATCCATGGCCGCGGCGAGCGGACCGTGGCTGCTCGTCGTGGTCGTGGCTTGGGTCTTGGGCGTTGCGGCCGCCTCGTCGTCGTCGTCATCGCCTGGGCAGGCAGGTACCAGCCAGAAATTCAACAAGTGTATGCCGTGCTCTAGGAGATATGTCGCTGATTCATACCTCGATACCTTGATCGGCCAGCTTGCTCAACATCGTGACTTGACTGAAACATCTGATTCTGCTGACTCATGCAAAGGACTTGATTATGATCTTGATGCACCCATGCTTACAGAATTGCACTCGGAACTGGTTGGTGAAGGTTCTCATCGCCGTCTAGTCTATCATGTGGAATTTGCTAACTGTGCAGATGCTATGGTTAATTTCCTTGATAACTATGATGCCAATCTGGTGGTAATAGAAAATCTCCCGAATGGTGTGTTTGCTGACCCATTTGAGCTACAACATTTTGTTGAGCGGAAAGTATATCTTGATATGGTTGTTTTCGGAGACACCAACCTTGAACTGCCTTCGGCTCTATCCAACCGGTCATCTGTGGAAATCCATGTTGATCTCGCACCACTTGCATCGATGAACTGTAACCTTGTAATAGACCTGCCTCTCCATGCTAGATACCCACCTCTTGATGCCAGTGGTTATGCGACGGTTGAGTTTGGTAGCCCAGATCTGCTTCTACGTTACAGAAAGAAGGATACTGTTCCTGAATCCTGCTCATGGTTGCTTAAAGATCTTGATGCTGCACCTGTGGAGAAAGCTACATGGCGCATACCCTGTGGAGACGAAGCGCACATAGGATTTGTATCTAGTATCACTTTTCTTTCAGCTCTAGTTTGCTCAATTTTAATAGTCATAGCTGCCCTATTTTATTGATGTCAAAACTGAAATGCAAGACAAGTTGGAT ]
[+] EMBL CB662962 [ CGTCGTCTTCCCCGGAAACGGTCACGCGACTCGCGAGCTCCCGCCGCCGCCGCCGCCGTCGCCGTCGCCGTCGCGGCCTCCCACCTCTCCCTCTACCCCACCACACTCGCCGCCGGCGAGGCCTGACGGCGATCCCCAACACTGCCCCCCGGCGGCTGCCGTTGGATCGTGGGAGGGAGGATTGGCCGGTTGTACTACAGTTGAGGGAGGGAGGAGCTACCGTTTGTGATCCGCCGCCTGCGACCGGGCGTCCCCGTAGTTAGATCCGGCTCGACCACCACGGCCTCCGGCGCTCTGAGCGGCTGCTCTGTGTGAGAGGCCCTGCTGCTGAAAGAGAATCCATGGCCGCGGCGAGCGGACCGTGGCTGCTCGTCGTGGTCGTGGCTTGGGTCTTGGGCGTTGCGGCCGCCTCGTCGTCGTCGTCATCGCCTGGGCAGGCAGGTACCAGCCAGAAATTCAACAAGTGTATGCCGTGCTCTAGGAGATATGTCGCTGATTCATACCTCGATACCTTGATCGGCCAGCTTGCTCAACATCGTGACTTGACTGAAACATCTGATTCTGCTGACTCATGCAAAGGACTTGATTATGATCTTGATGCACCCATGCTTACAGAATTGCACTCGGAACTGGTTGGTGAAGGTTCTCATCGCCGTCTAGTCTATCATGTGGAATTTGCTAACTGTGCAGATGCTATGGTTAATTTCCTTGATAACTATGATGCCAATCTGGTGGTAATAGAAAATCTCCCGAATGGTGTGTTTGCTGACCCATTTGAGCTACAACATTTTGTTGAGCGGAAAG ]
[-] EMBL CB662963 [ ACAAGTGTATGCCGTGCTCTAGGAGATATGTCGCTGATTCATACCTCGATACCTGNATCGGCCAGCTTGCTCAACATCGTGACTTGACTGAAACATCTGATTCTGCTGACTCATGCAAAGGACTTGATTATGATCTTGATGCACCCATGCTTACAGAATTGCACTCGGAACTGGTTGGTGAAGGTTCTCATCGCCGTCTAGTCTATCATGTGGAATTTGCTAACTGTGCAGATGCTATGGTTAATTTCCTTGATAACTATGATGCCAATCTGGTGGTAATAGAAAATCTCCCGAATGGTGTGTTTGCTGACCCATTTGAGCTACAACATTTTGTTGAGCGGAAAGTATATCTTGATATGGTTGTTTTCGGAGACACCAACCTTGAACTGCCTTCGGCTCTATCCAACCGGTCATCTGTGGAAATCCATGTTGATCTCGCACCACTTGCATCGATGAACTGTAACCTTGTAATAGACCTGCCTCTCCATGCTAGATACCCACCTCTTGATGCCAGTGGTTATGCGACGGTTGAGTTTGGTAGCCCAGATCTGCTTCTACGTTACAGAAAGAAGGATACTGTTCCTGAATCCTGCTCATGGTTGCTTAAAGATCTTGATGCTGCACCTGTGGAGAAAGCTACATGGCGCATACCCTGTGGAGACGAAGCGCACATAGGATTTGTATCTAGTATCACTTTTCTTTCAGCTCTAGTTTGCTCAATTTTAATAGTCATAGCTGCCCTATTTTATTGATGTCAAAACTGAAATGCAAGACAAGTTGGATTATTTCGTCCAAATCAAAATATGTTATGTGATTACT ]
[-] EMBL CB663288 [ ACCCTGTGGAGACGAAGCGCACATAGGATTTGTATTTAGTATCACTTTTCTTTCAGCTATAGGGTGCTCAATTTTAATAGTCATAGCTGCCCTATTTTATTGATGTCAAAACTGAAATGCAAGACAAGTTGGATTATTTCGTCCAAATCAAAATATGTTATGTGATTACTTTTTCAGACATTTATAACCCCATTATCTTGTTCATGTCTAGAACACAATCAAAGGGAAAGTTCTTTGCAGTTGAAGTTGCGAACCTGCAGTTGCCTGACCACTGATAACTGACCAGGGCATCTGCCTGCAACATCACAAGGAGTTATAAAAGGAAAAGAATAATTTCCTTCATGAGGGCAGGAAGGAATGCCCAGTTGTTGAATTCTGAGTTGATCTGGATCAGAAGCTACCCTATTTTATTGTCTTGGAAGCAGCCAAGCAGGTGAAGCATGAATTGGAAGCTTGTGTTAACAACTGTACTCCTTTTGTCTTTGCACGCTTAATAGACTGGCACAGACAGTCATTCTCTGGTTATAAAAATCCAGAGCTGTCCCATTTTTAATTTCAGTAAGGCAGCATGCTACCCCAGGATCAGGTGAGCAGTTCTGTTCTGTCTGACAGACTGGATCTGTTGGGTGACAAAA]
consensusID : consensus_8525#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 592 fasta sequence
[GAGGTGGGAGTTTTTNCNTATTNTAGGATGCAAGGCAAGTAGGTAATTCCTGAAATAGAGCCANTNGGNGTAAAGAAATTTCCGGATGGGTGTTGGCNGACCATTGAGTACAAAATTTGGNGAGGGGAAGTANNTTTGANAGGGTGTTTNGGAGAACCAACCTGGAATGCTTCGGTCTATCCAACCGGTCATCTGGGAAATCCATGTTGATCTCGCACCACTTGCATCGATGAACTGTAACCTTGTAATAGACCTGCCTCTCCATGCTAGATACCCACCTCTTGATGCCAGTGGTTATGCGACGGTTGAGTTTGGTAGCCCAGATCTGCTTCTACGTTACAGAAAGAAGGATACTGTTCCTGAATCCTGCTCATGGTTGCTTAAAGATCTTGATGCTGCACCTGTGGAGAAAGCTACATGGCGCATACCCTGTGGAGACGAAGCGCACATAGGATTTGTATCTAGTATCACTTTTCTTTCAGCTCTAGTTTGCTCAATTTTAATAGTCATAGCTGCCCTATTTTATTGATGTCAAAACTGAAATGCAAGACAAGTTGGATTATTTCGTCCAAATCAAAATATGTTATGTGAT]
[-] EMBL BE229181 [GAGGTGGGAGTTTTTNCNTATTNTAGGATGCAAGGCAAGTAGGTAATTCCTGAAATAGAGCCANTNGGNGTAAAGAAATTTCCGGATGGGTGTTGGCNGACCATTGAGTACAAAATTTGGNGAGGGGAAGTANNTTTGANAGGGTGTTTNGGAGAACCAACCTGGAATGCTTCGGTCTATCCAACCGGTCATCTGGGAAATCCATGTTGATCTCGCACCACTTGCATCGATGAACTGTAACCTTGTAATAGACCTGCCTCTCCATGCTAGATACCCACCTCTTGATGCCAGTGGTTATGCGACGGTTGAGTTTGGTAGCCCAGATCTGCTTCTACGTTACAGAAAGAAGGATACTGTTCCTGAATCCTGCTCATGGTTGCTTAAAGATCTTGATGCTGCACCTGTGGAGAAAGCTACATGGCGCATACCCTGTGGAGACGAAGCGCACATAGGATTTGTATCTAGTATCACTTTTCTTTCAGCTCTAGTTTGCTCAATTTTAATAGTCATAGCTGCCCTATTTTATTGATGTCAAAACTGAAATGCAAGACAAGTTGGATTATTTCGTCCAAATCAAAATATGTTATGTGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8525#0 CCCACTCCGTCGTCTTCCCCGGAAACGGTCACGCGACTCGCGAGCTCCCGCCGCCGCCGC 60
consensus_8525#1 ------------------------------------------------------------
consensus_8525#0 CGCCGTCGCCGTCGCCGTCGCGGCCTCCCACCTCTCCCTCTACCCCACCACACTCGCCGC 120
consensus_8525#1 ------------------------------------------------------------
consensus_8525#0 CGGCGAGGCCTGACGGCGATCCCCAACACTGCCCCCCGGCGGCTGCCGTTGGATCGTGGG 180
consensus_8525#1 ------------------------------------------------------------
consensus_8525#0 AGGGAGGATTGGCCGGTTGTACTACAGTTGAGGGAGGGAGGAGCTACCGTTTGTGATCCG 240
consensus_8525#1 ------------------------------------------------------------
consensus_8525#0 CCGCCTGCGACCGAGCGTCCCCGTAGTTAGATCCGGCTCGACCACCACGGCCTCCGGCGC 300
consensus_8525#1 ------------------------------------------------------------
consensus_8525#0 TCTGAGCGGCTGCTCTGTGTGAGAGGCCCTGCTGCTGAAAGAGAATCCATGGCCGCGGCG 360
consensus_8525#1 ------------------------------------------------------------
consensus_8525#0 AGCGGACCGTGGCTGCTCGTCGTGGTCGTGGCTTGGGTCTTGGGCGTTGCGGCCGCCTCG 420
consensus_8525#1 ------------------------------------------------------------
consensus_8525#0 TCGTCGTCGTCATCGCCTGGGCAGGCAGGTACCAGCCAGAAATTCAACAAGTGTATGCCG 480
consensus_8525#1 ------------------------------------------------------------
consensus_8525#0 TGCTCTAGGAGATATGTCGCTGATTCATACCTCGATACCTTGATCGGCCAGCTTGCTCAA 540
consensus_8525#1 ------------------------------------------------------------
consensus_8525#0 CATCGTGACTTGACTGAAACATCTGATTCTGCTGACTCATGCAAAGGACTTGATTATGAT 600
consensus_8525#1 ------------------------------------------------------------
consensus_8525#0 CTTGATGCACCCATGCTTACAGAATTGCACTCGGAACTGGTTGGTGAAGGTTCTCATCGC 660
consensus_8525#1 ------------------------------------------------------------
consensus_8525#0 CGTCTAGTCTATCATGTGGAATTTGCTAACTGT-GCAGATGCTATGGTTAATTTCCTTGA 719
consensus_8525#1 ------------GAGGTGGGAGTTTTTNCNTATTNTAGGATGCAAGGCAAGT-----AGG 43
* **** * ** * * * ** * ** * * *
consensus_8525#0 TAACTA-TGATGCCAATCTGGTGGTAATAGAAAATCTCCCGAATGGTGTGTTTGCTGACC 778
consensus_8525#1 TAATTCCTGAAATAGAGCCANTNGGNGTAAAGAAATTTCCGGATGG-GTGTTGGCNGACC 102
*** * *** * * * * ** * ** * *** **** ***** ** ****
consensus_8525#0 CATTTGAGCTACAACATTTTGTTGAGCGGAAAGTATATCTTGATATGGTTGTTTTCGGAG 838
consensus_8525#1 A--TTGAG-TACAAAATTTGGN-GAG-GGGAAGTANNT-TTGANAGGGT--GTTTNGGAG 154
***** ***** **** * *** ** ***** * **** * *** *** ****
consensus_8525#0 ACACCAACCTTGAACTGCCTTCGGCTCTATCCAACCGGTCATCTGTGGAAATCCATGTTG 898
consensus_8525#1 A-ACCAACCTGGAATG--CTTCGG-TCTATCCAACCGGTCATCTG-GGAAATCCATGTTG 209
* ******** *** ****** ******************** **************
consensus_8525#0 ATCTCGCACCACTTGCATCGATGAACTGTAACCTTGTAATAGACCTGCCTCTCCATGCTA 958
consensus_8525#1 ATCTCGCACCACTTGCATCGATGAACTGTAACCTTGTAATAGACCTGCCTCTCCATGCTA 269
************************************************************
consensus_8525#0 GATACCCACCTCTTGATGCCAGTGGTTATGCGACGGTTGAGTTTGGTAGCCCAGATCTGC 1018
consensus_8525#1 GATACCCACCTCTTGATGCCAGTGGTTATGCGACGGTTGAGTTTGGTAGCCCAGATCTGC 329
************************************************************
consensus_8525#0 TTCTACGTTACAGAAAGAAGGATACTGTTCCTGAATCCTGCTCATGGTTGCTTAAAGATC 1078
consensus_8525#1 TTCTACGTTACAGAAAGAAGGATACTGTTCCTGAATCCTGCTCATGGTTGCTTAAAGATC 389
************************************************************
consensus_8525#0 TTGATGCTGCACCTGTGGAGAAAGCTACATGGCGCATACCCTGTGGAGACGAAGCGCACA 1138
consensus_8525#1 TTGATGCTGCACCTGTGGAGAAAGCTACATGGCGCATACCCTGTGGAGACGAAGCGCACA 449
************************************************************
consensus_8525#0 TAGGATTTGTATCTAGTATCACTTTTCTTTCAGCTCTAGTTTGCTCAATTTTAATAGTCA 1198
consensus_8525#1 TAGGATTTGTATCTAGTATCACTTTTCTTTCAGCTCTAGTTTGCTCAATTTTAATAGTCA 509
************************************************************
consensus_8525#0 TAGCTGCCCTATTTTATTGATGTCAAAACTGAAATGCAAGACAAGTTGGATTATTTCGTC 1258
consensus_8525#1 TAGCTGCCCTATTTTATTGATGTCAAAACTGAAATGCAAGACAAGTTGGATTATTTCGTC 569
************************************************************
consensus_8525#0 CAAATCAAAATATGTTATGTGATTACTTTTTCAGACATTTATAACCCCATTATCTTGTTC 1318
consensus_8525#1 CAAATCAAAATATGTTATGTGAT------------------------------------- 592
***********************
consensus_8525#0 ATGTCTAGAACACAATCAAAGGGAAAGTTCTTTGCAGTTGAAGTTGCGAACCTGCAGTTG 1378
consensus_8525#1 ------------------------------------------------------------
consensus_8525#0 CCTGACCACTGATAACTGACCAGGGCATCTGCCTGCAACATCACAAGGAGTTATAAAAGG 1438
consensus_8525#1 ------------------------------------------------------------
consensus_8525#0 AAAAGAATAATTTCCTTCATGAGGGCAGGAAGGAATGCCCAGTTGTTGAATTCTGAGTTG 1498
consensus_8525#1 ------------------------------------------------------------
consensus_8525#0 ATCTGGATCAGAAGCTACCCTATTTTATTGTCTTGGAAGCAGCCAAGCAGGTGAAGCATG 1558
consensus_8525#1 ------------------------------------------------------------
consensus_8525#0 AATTGGAAGCTTGTGTTAACAACTGTACTCCTTTTGTCTTTGCACGCTTAATAGACTGGC 1618
consensus_8525#1 ------------------------------------------------------------
consensus_8525#0 ACAGACAGTCATTCTCTGGTTATAAAAATCCAGAGCTGTCCCATTTTTAATTTCAGTAAG 1678
consensus_8525#1 ------------------------------------------------------------
consensus_8525#0 GCAGCATGCTACCCCAGGATCAGGTGAGCAGTTCTGTTCTGTCTGACAGACTGGATCTGT 1738
consensus_8525#1 ------------------------------------------------------------
consensus_8525#0 TGGGTGACAAAA 1750
consensus_8525#1 ------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||