cluster # 8609

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Oryza sativa
cluster # 8609 cluster # 8609 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8609#0 length = 931 sequences # 4

consensus_8609#1 length = 179 sequences # 1

consensusID : consensus_8609#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 931
fasta sequence

                              [TTCTGGATGAGCACCCACAACGACGAATGCAGGCGGTCCTTGACGATCCCTGTCATGGGTCTTGGAGGAGTAATTTTCCTCATATCGCTCGTGGGGTTTCTTGGTGCTTGGAAGAAAATTGCTTGCTTGCTATGGACATATCTGGTAATGCTGTTCGTGGTTTTGGTGGCAATCATGGTGTTCACAGTGCTTGCGTTTATTATCACAAATACCGGAACTGGCCATTCTGTCTCTGGGGTGAGATACAAAGAGTATCGTCTGCAGGATTATAGCTCTTGGTTTATCAAACAGCTGAATGACACTGAAAAATGGACTCACCTGAGAAGCTGTCTTGTGAAATCAGATGATTGTAATGGCTTGTCAAGAAGATACAAGACTCTGAAACAATACAAGCTTGCAGATCTTACTCCTATGGAGTCTGGTTGCTGCCGTCCACCGGCAGAGTGCGGGTACCCAGCTGTAAACGCTTCCTACTTTGATTTGAGCTATCATCCAGTCAGCACGAATGTCGACTGCAAACTGTACAAAAACGCACGCTCTGTTCTGTGCTATGATTGTGATTCTTGCAAAGCTGGGGTTGCTCAATACATGAAAACAGAGTGGAGGGTGGTAGCCATCTTTAACGTCATACTGTTTGTCATCTTGTCTTTCGTCTACTTCGTCGCGTGCTGTGCGCGCCGAAACACCGGAGAGAGCGACTCCAAGGTTCCTACAAGATGGCATGCATGATTGGCAGATGAAGCATCGTAGAGTTAGCTTTTGCTATTGCTTGTAGTGGCATTGTTCAGTCAAGTCTCGTTGGTGAAATGGAATGCAAGGGCTTTTCCTTTCTGGTGTGGGATGATGATGTTCTTTGTTGCAGTTGGCTTGTGAACATTTTAGGAATAAGTTCATTTTAGGTCCCTTAACTTTAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK103857             [TTCTGGATGAGCACCCACAACGACGAATGCAGGCGGTCCTTGACGATCCCTGTCATGGGTCTTGGAGGAGTAATTTTCCTCATATCGCTCGTGGGGTTTCTTGGTGCTTGGAAGAAAATTGCTTGCTTGCTATGGACATATCTGGTAATGCTGTTCGTGGTTTTGGTGGCAATCATGGTGTTCACAGTGCTTGCGTTTATTATCACAAATACCGGAACTGGCCATTCTGTCTCTGGGGTGAGATACAAAGAGTATCGTCTGCAGGATTATAGCTCTTGGTTTATCAAACAGCTGAATGACACTGAAAAATGGACTCACCTGAGAAGCTGTCTTGTGAAATCAGATGATTGTAATGGCTTGTCAAGAAGATACAAGACTCTGAAACAATACAAGCTTGCAGATCTTACTCCTATGGAGTCTGGTTGCTGCCGTCCACCGGCAGAGTGCGGGTACCCAGCTGTAAACGCTTCCTACTTTGATTTGAGCTATCATCCAGTCAGCACGAATGTCGACTGCAAACTGTACAAAAACGCACGCTCTGTTCTGTGCTATGATTGTGATTCTTGCAAAGCTGGGGTTGCTCAATACATGAAAACAGAGTGGAGGGTGGTAGCCATCTTTAACGTCATACTGTTTGTCATCTTGTCTTTCGTCTACTTCGTCGCGTGCTGTGCGCGCCGAAACACCGGAGAGAGCGACTCCAAGGTTCCTACAAGATGGCATGCATGATTGGCAGATGAAGCATCGTAGAGTTAGCTTTTGCTATTGCTTGTAGTGGCATTGTTCAGTCAAGTCTCGTTGGTGAAATGGAATGCAAGGGCTTTTCCTTTCTGGTGTGGGATGATGATGTTCTTTGTTGCAGTTGGCTTGTGAACATTTTAGGAATAAGTTCATTTTAGGTC                             ]
[+] EMBL C91612               [TTCTGGATGAGCACCCACAACGACGAATGCAGGCGGTCCTTGACGATCCCTGTCATGGGTCTTGGAGGAGTAATTTTCCTCATATCGCTCGTGGGGTTTCTTGGTGCTTGGAAGAAAATTGCTTGCTTGCTATGGACATATCTGGTAATGCTGTTCGTGGTTTTGGTGGCAATCATGGTGTTCACAGTGCTTGCGTTTATTATCACAAATACCGGAACTGGCCATTCTGTCTCTGGGGTGAGATACAAAGAGTATCGTCTGCAGGATTATAGCTCTTGGTTTATCAAACAGCTGAATGACACTGAAAAATGGACTCACCTGAGAAGCTGTCTTGTGAAATCAGATGATTGTAATGGCTTGTCAAGAAGATACAAGACTCTGAAACAATACAAGCTTGCAGATCTTACTCCTATGGAGTCTGGTTGCTGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU078629             [TTCTGGATGAGCACCCACAACGACGAATGCAGGCGGTCCTTGACGATCCCTGTCATGGGTCTTGGAGGAGTAATTTTCCTCATATCGCNCGTGGGGTNTCTTNGTGCTTGGAAGAAAATTGCTTGCTTGCTATGGACATATCTGGTAATGCTGTTCGTGGTTTTGGTGGCAATCATGGTGTTCACAGTNCTTGCGTTTATTATCACAAATACCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU058035             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AGTCAGCACGAATGNCGACTGC AACTGTACAAAAACGCACGCTCTGTCCTGTGCTATGATTGTGATTCTTGCAAANCTGGGGTTGCTCAATACATGAAAACAGAGTGGAGGGTGGTAGCCATCTTTAACGTCATACTGTTTGTCANCTTGTCTTTCGTCTACTTCGTCGCGTGCTGTGCGCGCCGAAACACCGGAGAGAGCGACTCCAAGGTTCCTACAAGATGGCATGCATGATTGGCAGATGAAGCATCGTAGAGTTAGCTTTTGCTATTGCTTGTAGTGGCATTGTTCAGTCAAGTCNCGTTGGTGAAATGGAATGCAAGGGCTTTTCCTTTCTGGTGTGGGATGATGATGTTCTTTGTTGCAGTTGGCTTGTGAACATTTTAGGAATAAGTTCATTTTAGGTCCCTTAACTTTAAAAAAAAAAAAAAAAAAA]




>consensus_8609#0
TTCTGGATGAGCACCCACAACGACGAATGCAGGCGGTCCTTGACGATCCCTGTCATGGGT
CTTGGAGGAGTAATTTTCCTCATATCGCTCGTGGGGTTTCTTGGTGCTTGGAAGAAAATT
GCTTGCTTGCTATGGACATATCTGGTAATGCTGTTCGTGGTTTTGGTGGCAATCATGGTG
TTCACAGTGCTTGCGTTTATTATCACAAATACCGGAACTGGCCATTCTGTCTCTGGGGTG
AGATACAAAGAGTATCGTCTGCAGGATTATAGCTCTTGGTTTATCAAACAGCTGAATGAC
ACTGAAAAATGGACTCACCTGAGAAGCTGTCTTGTGAAATCAGATGATTGTAATGGCTTG
TCAAGAAGATACAAGACTCTGAAACAATACAAGCTTGCAGATCTTACTCCTATGGAGTCT
GGTTGCTGCCGTCCACCGGCAGAGTGCGGGTACCCAGCTGTAAACGCTTCCTACTTTGAT
TTGAGCTATCATCCAGTCAGCACGAATGTCGACTGCAAACTGTACAAAAACGCACGCTCT
GTTCTGTGCTATGATTGTGATTCTTGCAAAGCTGGGGTTGCTCAATACATGAAAACAGAG
TGGAGGGTGGTAGCCATCTTTAACGTCATACTGTTTGTCATCTTGTCTTTCGTCTACTTC
GTCGCGTGCTGTGCGCGCCGAAACACCGGAGAGAGCGACTCCAAGGTTCCTACAAGATGG
CATGCATGATTGGCAGATGAAGCATCGTAGAGTTAGCTTTTGCTATTGCTTGTAGTGGCA
TTGTTCAGTCAAGTCTCGTTGGTGAAATGGAATGCAAGGGCTTTTCCTTTCTGGTGTGGG
ATGATGATGTTCTTTGTTGCAGTTGGCTTGTGAACATTTTAGGAATAAGTTCATTTTAGG
TCCCTTAACTTTAAAAAAAAAAAAAAAAAAA

consensusID : consensus_8609#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 179
fasta sequence

                              [TTCGCCACGANGTAAATTAGCTTTTGCTATTGCTTGTAGTGGNATTGTTCAGTCAAGTCTCGTTGGTGAAATGGAATGCAAGGGCTTTTCCTTTCTGGTGTGGGATGATNATGTTCTTTGTTGCAGTTGGCTTGTGAACATTTTAGGAATAAGTTCATTTTAGGTCCCTTAACTTTACA]

[+] EMBL AA751692             [TTCGCCACGANGTAAATTAGCTTTTGCTATTGCTTGTAGTGGNATTGTTCAGTCAAGTCTCGTTGGTGAAATGGAATGCAAGGGCTTTTCCTTTCTGGTGTGGGATGATNATGTTCTTTGTTGCAGTTGGCTTGTGAACATTTTAGGAATAAGTTCATTTTAGGTCCCTTAACTTTACA]




>consensus_8609#1
TTCGCCACGANGTAAATTAGCTTTTGCTATTGCTTGTAGTGGNATTGTTCAGTCAAGTCT
CGTTGGTGAAATGGAATGCAAGGGCTTTTCCTTTCTGGTGTGGGATGATNATGTTCTTTG
TTGCAGTTGGCTTGTGAACATTTTAGGAATAAGTTCATTTTAGGTCCCTTAACTTTACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8609#0      TTCTGGATGAGCACCCACAACGACGAATGCAGGCGGTCCTTGACGATCCCTGTCATGGGT 60
consensus_8609#1      ------------------------------------------------------------
                                                                                  

consensus_8609#0      CTTGGAGGAGTAATTTTCCTCATATCGCTCGTGGGGTTTCTTGGTGCTTGGAAGAAAATT 120
consensus_8609#1      ------------------------------------------------------------
                                                                                  

consensus_8609#0      GCTTGCTTGCTATGGACATATCTGGTAATGCTGTTCGTGGTTTTGGTGGCAATCATGGTG 180
consensus_8609#1      ------------------------------------------------------------
                                                                                  

consensus_8609#0      TTCACAGTGCTTGCGTTTATTATCACAAATACCGGAACTGGCCATTCTGTCTCTGGGGTG 240
consensus_8609#1      ------------------------------------------------------------
                                                                                  

consensus_8609#0      AGATACAAAGAGTATCGTCTGCAGGATTATAGCTCTTGGTTTATCAAACAGCTGAATGAC 300
consensus_8609#1      ------------------------------------------------------------
                                                                                  

consensus_8609#0      ACTGAAAAATGGACTCACCTGAGAAGCTGTCTTGTGAAATCAGATGATTGTAATGGCTTG 360
consensus_8609#1      ------------------------------------------------------------
                                                                                  

consensus_8609#0      TCAAGAAGATACAAGACTCTGAAACAATACAAGCTTGCAGATCTTACTCCTATGGAGTCT 420
consensus_8609#1      ------------------------------------------------------------
                                                                                  

consensus_8609#0      GGTTGCTGCCGTCCACCGGCAGAGTGCGGGTACCCAGCTGTAAACGCTTCCTACTTTGAT 480
consensus_8609#1      ------------------------------------------------------------
                                                                                  

consensus_8609#0      TTGAGCTATCATCCAGTCAGCACGAATGTCGACTGCAAACTGTACAAAAACGCACGCTCT 540
consensus_8609#1      ------------------------------------------------------------
                                                                                  

consensus_8609#0      GTTCTGTGCTATGATTGTGATTCTTGCAAAGCTGGGGTTGCTCAATACATGAAAACAGAG 600
consensus_8609#1      ------------------------------------------------------------
                                                                                  

consensus_8609#0      TGGAGGGTGGTAGCCATCTTTAACGTCATACTGTTTGTCATCTTGTCTTTCGTCTACTTC 660
consensus_8609#1      ------------------------------------------------------------
                                                                                  

consensus_8609#0      GTCGCGTGCTGTGCGCGCCGAAACACCGGAGAGAGCGACTCCAAGGTTCCTACAAGATGG 720
consensus_8609#1      ------------------------------------------------------------
                                                                                  

consensus_8609#0      CATGCATGATTGGCAGATGAAGCATCGTAGAGTTAGCTTTTGCTATTGCTTGTAGTGGCA 780
consensus_8609#1      ---------------TTCGCCACGANGTA-AATTAGCTTTTGCTATTGCTTGTAGTGGNA 44
                                        *   *   *** * ************************** *

consensus_8609#0      TTGTTCAGTCAAGTCTCGTTGGTGAAATGGAATGCAAGGGCTTTTCCTTTCTGGTGTGGG 840
consensus_8609#1      TTGTTCAGTCAAGTCTCGTTGGTGAAATGGAATGCAAGGGCTTTTCCTTTCTGGTGTGGG 104
                      ************************************************************

consensus_8609#0      ATGATGATGTTCTTTGTTGCAGTTGGCTTGTGAACATTTTAGGAATAAGTTCATTTTAGG 900
consensus_8609#1      ATGATNATGTTCTTTGTTGCAGTTGGCTTGTGAACATTTTAGGAATAAGTTCATTTTAGG 164
                      ***** ******************************************************

consensus_8609#0      TCCCTTAACTTTAAAAAAAAAAAAAAAAAAA 931
consensus_8609#1      TCCCTTAACTTTACA---------------- 179
                      ************* *