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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8612#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1670 fasta sequence
[GGTTCAAAAGGCCTAGAAGAACGAAGCGGAGCTTAGCTCGCGCATGTGCCAACCTGAACCTCCGCTGCGAAACGCCGCGACATCTCGCCGCGCGAGCTAAGCTTAGCTGCAGGTGAGCCATCGGCGATGGCGACGGCGGCGATGACCAAGGTGTTCGTCCTGCTCTTTCTGGTGGCGGCGTGCTACCTGCCGGCGCACGCGGCGGCAGCGGAGTGCGACTGCGCGACGGACACGGCGGGGCGGGACAAGGCGCAGGCGCTGCGGCTCAAGGTCATCGCCATCTTCTGCATCCTCGCCGGGAGCACCGTCGGGGCGGCGCTGCCGTCACTGGGCGGCAGGTTCCCGGCGATCCAGCCGGAGACGGACGTGTTCCTCTCCGTCAAGGCCTTCGCCGGCGGCGTCATCCTCGCCACGGGCCTGGTGCACATCCTCCCCGCGGCCTTCGAGGCGCTCAGCTCGCCGTGCCTCGTCGGCGGCCCGTGGAAGCGCTTCCCGTTCGCCGGCATGGTCGCCATGGTCTCCGCCATCGGCACGCTCATCGTCGACACCGTCGCCACGGGGTACTTCCACCGCACGGACGCCAAGAGGAAGGCCGCGGCCGTCGCCGACGAGCCAGCCGACGACCTGGAGGCCTCCGACGAGCACAGCCACGGCCACGCCCACGGCATGTCCGTCATGTCCGTCGCTCCCGCCGGCGAGGAAGACCTCGTCCGCCACCGCGTCATCTCTCAGGTGCTGGAGCTGGGAGTGGTGGTGCACTCGCTCATCATCGGGATGTCGCTGGGCGCCTCCGACTTCCCGAGCACGGTGCGGCCGCTCGTGCCGGCGCTGACGTTTCATCAGTTCTTCGAGGGCATCGGGCTCGGCGGATGCATCGTTCAGGCAAAGTTCCGTGTCAGGTCAGTGGTGACGATGGCGCTCTTCTTCTCCCTGACGACGCCGGCCGGCATCGTCGTCGGGATCGGGATCTCCTCCGTCTACGACGCGAACAGCCCAACGGCGCTGGTGGTGCAGGGGCTCCTCGAGGCGGCGGCAGCGGGGATACTCGTCTACATGGCGCTCGTCGACATCCTCGCCGAGGACTTCATGAAGACCAAGGTGCAGAGAAGGGGACGCCTGCAGCTCGCCATGAACGTCGCGTTGCTGCTCGGCGCAGGGCTCATGTCCATGATCGCCATCTGGGCGTGATGAGTGAGTGACCATCACGGCCAGCATGCGACGTGCGGCGTTTCAATTTGTTCGGCAGGAATGGCAGGTTTTTGTTCTTAGGCGCGTCTGAT-CACGCTCGCGCTCTCGCGAAGACCTGAGAATTCGTTCGAGGATCTCAAAAGAGAGACCACTCCGTTGGTTGAAACTGACGAGGAGAGGGGTCTCCCGTGCACGATATGTAGAACAGTTCAGTGACCATGTTACTCTGACTTGACTGACTGACCCGTCATCGTCGTCGTTGCTCTCTTACTGTGCAGAACTTGTAGAGTCGTGCACTTGCGCCTACCACTGTCCTTCATCTTGGAGGACAATAATGCCAGTGGTGGGCAGAATTCTGGTCTTGATGTGAATCCGTGATGTACGGGGTAAGACAAGGCTCGTGAATGAGTATACTCCATATCTGTAAAGCTCTATCATATCCGAAGGTCATCACGAGTTAGTTAGAGTGTTAAAAAAAAAAA]
[+] EMBL AK070864 [GGTTCAAAAGGCCTAGAAGAACGAAGCGGAGCTTAGCTCGCGCATGTGCCAACCTGAACCTCCGCTGCGAAACGCCGCGACATCTCGCCGCGCGAGCTAAGCTTAGCTGCAGGTGAGCCATCGGCGATGGCGACGGCGGCGATGACCAAGGTGTTCGTCCTGCTCTTTCTGGTGGCGGCGTGCTACCTGCCGGCGCACGCGGCGGCAGCGGAGTGCGACTGCGCGACGGACACGGCGGGGCGGGACAAGGCGCAGGCGCTGCGGCTCAAGGTCATCGCCATCTTCTGCATCCTCGCCGGGAGCACCGTCGGGGCGGCGCTGCCGTCACTGGGCGGCAGGTTCCCGGCGATCCAGCCGGAGACGGACGTGTTCCTCTCCGTCAAGGCCTTCGCCGGCGGCGTCATCCTCGCCACGGGCCTGGTGCACATCCTCCCCGCGGCCTTCGAGGCGCTCAGCTCGCCGTGCCTCGTCGGCGGCCCGTGGAAGCGCTTCCCGTTCGCCGGCATGGTCGCCATGGTCTCCGCCATCGGCACGCTCATCGTCGACACCGTCGCCACGGGGTACTTCCACCGCACGGACGCCAAGAGGAAGGCCGCGGCCGTCGCCGACGAGCCAGCCGACGACCTGGAGGCCTCCGACGAGCACAGCCACGGCCACGCCCACGGCATGTCCGTCATGTCCGTCGCTCCCGCCGGCGAGGAAGACCTCGTCCGCCACCGCGTCATCTCTCAGGTGCTGGAGCTGGGAGTGGTGGTGCACTCGCTCATCATCGGGATGTCGCTGGGCGCCTCCGACTTCCCGAGCACGGTGCGGCCGCTCGTGCCGGCGCTGACGTTTCATCAGTTCTTCGAGGGCATCGGGCTCGGCGGATGCATCGTTCAGGCAAAGTTCCGTGTCAGGTCAGTGGTGACGATGGCGCTCTTCTTCTCCCTGACGACGCCGGCCGGCATCGTCGTCGGGATCGGGATCTCCTCCGTCTACGACGCGAACAGCCCAACGGCGCTGGTGGTGCAGGGGCTCCTCGAGGCGGCGGCAGCGGGGATACTCGTCTACATGGCGCTCGTCGACATCCTCGCCGAGGACTTCATGAAGACCAAGGTGCAGAGAAGGGGACGCCTGCAGCTCGCCATGAACGTCGCGTTGCTGCTCGGCGCAGGGCTCATGTCCATGATCGCCATCTGGGCGTGATGAGTGAGTGACCATCACGGCCAGCATGCGACGTGCGGCGTTTCAATTTGTTCGGCAGGAATGGCAGGTTTTTGTTCTTAGGCGCGTCTGAT CACGCTCGCGCTCTCGCGAAGACCTGAGAATTCGTTCGAGGATCTCAAAAGAGAGACCACTCCGTTGGTTGAAACTGACGAGGAGAGGGGTCTCCCGTGCACGATATGTAGAACAGTTCAGTGACCATGTTACT ]
[+] EMBL AY281300 [ GGCGATGGCGACGGCGGCGATGACCAAGGTGTTCGTCCTGCTCTTTCTGGTGGCGGCGTGCTACCTGCCGGCGCACGCGGCGGCAGCGGAGTGCGACTGCGCGACGGACACGGCGGGGCGGGACAAGGCGCAGGCGCTGCGGCTCAAGGTCATCGCCATCTTCTGCATCCTCGCCGGGAGCACCGTCGGGGCGGCGCTGCCGTCCCTGGGCGGCAGGTTCCCGGCGATCCAGCCGGAGACGGACGTGTTCCTCTCCGTCAAGGCCTTCGCCGGCGGCGTCATCCTCGCCACGGGCCTGGTGCACATCCTCCCCGCGGCCTTCGAGGCGCTCAGCTCGCCGTGCCTCGTCGGCGGCCCGTGGAAGCGCTTCCCGTTCGCCGGCATGGTCGCCATGGTCTCCGCCATCGGCACGCTCATCGTCGACACCGTCGCCACGGGGTACTTCCACCGCACGGACGCCAAGAGGAAGGCCGCGGCCGTCGCCGACGAGCCAGCCGACGACCTGGAGGCCTCCGACGAGCACAGCCACGGGCACGCCCACGGCATGTCCGTCATGTCCGTCGCTCCCGCCGGCGAGGAAGACCTCGTCCGCCACCGCGTCATCTCTCAGGTGCTGGAGCTGGGAGTGGTGGTGCACTCGCTCATCATCGGGATGTCGCTGGGCGCCTCCGACTTCCCGAGCACGGTGCGGCCGCTCGTGCCGGCGCTGACGTTTCATCAGTTCTTCGAGGGCATCGGGCTCGGCGGATGCATCGTTCAGGCAAAGTTCCGTGTCAGGTCAGTGGTGACGATGGCGCTCTTCTTCTCCCTGACGACGCCGGCCGGCATCGTCGTCGGGATCGGGATCTCCTCCGTCTACGACGCGAACAGCCCAACGGCGCTGGTGGTGCAGGGGCTCCTCGAGGCGGCGGCAGCGGGGATACTCGTCTACATGGCGCTCGTCGACATCCTCGCCGAGGACTTCATGAAGACCAAGGTGCAGAGAAGGGGACGCCTGCAGCTCGCCATGAACGTCGCGTTGCTGCTCGGCGCAGGGCTCATGTCCATGATCGCCATCTGGGCGTGATGAGTGAGTGACCAT ]
[+] EMBL AU029809 [ GGCG TTNAATTTG TCGGCAGGAATGGCAGGTTTTTG TCTTAGGCCCGTCTGATCCAAGCTCGCNCTCTCGCGAAGACCTGAGAATTCGTTCGAGGATCTCAAAAGAGAGACCACTCCGTTGGTTGAAACTGACGAGGAGAGGGGTCTCCCGTGCACGATATGTAGAACAGTTCAGTGACCATGTTACTCTGACTTGACTGACTGACCCGTCATCGTCGTCGTTGCTCTCTTACTGTGCAGAACTTGTAGAGTCGTGCACTTGCGCCTACCACTGTCCTTCATCTTGGAGGACAATAATGCCAGTGGTGGGCAGAATTCTGGTCTTGATGTGAATCCGTGATGTACGGGGTAAGACAAGGCTCGTGAATGAGTATACTCCATATCTGTAAAGCTCTATCATATCCGAAGGTCATCACGAGTTAGTTAGAGTGTTAAAAAAAAAAA]
consensusID : consensus_8612#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence
[AGCCTTCGGAGGAGCACACCCACGNCCACGCCCACGGCATGTCCGTCATNTCNGTCGCTCCCCCCGGNGAGGAGACTTCGTCCGCCACCGGTCATTTCTCAGGTATGTCATANACATCTCCCGCCACCGCGCCATTCAAGAAACAGAGCTGCGAAAACAAAAAAACGCAACCAAATTAAGAAAATTCAATCAAAATTTCTGTTCTTATTTTCTTAATCGATTTTGCTTGTGCGTCCTTGATGGTGGAGGNNCTGGAGCTGGGAGTGGTGGTGCACTCGCTCATCATCGGGATGTCGCTGGGCGCCTCCGACTTCCCGAGCACGGTGCGGCCGCTCGTGCCGGCGCTGACGTTTCATCAGTTCTTCGAGGGCATCGGGCTCGGCGGATGCATCGTTCAGGTGATTTACCCACACATTTACTCCGCACTCACAATTGTCAATTTCAACCTGTTTTTTTTTTTTTTCGAGAGAGAGAGAGAGAGAGAAAGATTTCCACGTTTTTGGNGCTNANCTNGATNTCCAGATTACGAGGGC]
[-] EMBL AA751631 [AGCCTTCGGAGGAGCACACCCACGNCCACGCCCACGGCATGTCCGTCATNTCNGTCGCTCCCCCCGGNGAGGAGACTTCGTCCGCCACCGGTCATTTCTCAGGTATGTCATANACATCTCCCGCCACCGCGCCATTCAAGAAACAGAGCTGCGAAAACAAAAAAACGCAACCAAATTAAGAAAATTCAATCAAAATTTCTGTTCTTATTTTCTTAATCGATTTTGCTTGTGCGTCCTTGATGGTGGAGGNNCTGGAGCTGGGAGTGGTGGTGCACTCGCTCATCATCGGGATGTCGCTGGGCGCCTCCGACTTCCCGAGCACGGTGCGGCCGCTCGTGCCGGCGCTGACGTTTCATCAGTTCTTCGAGGGCATCGGGCTCGGCGGATGCATCGTTCAGGTGATTTACCCACACATTTACTCCGCACTCACAATTGTCAATTTCAACCTGTTTTTTTTTTTTTTCGAGAGAGAGAGAGAGAGAGAAAGATTTCCACGTTTTTGGNGCTNANCTNGATNTCCAGATTACGAGGGC]
consensusID : consensus_8612#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 295 fasta sequence
[CNCTGACGTTTCATCAGTTCTTNNAGGGCATCGGGCTCGGCGGATGCATCGTTCAGGTGATTTACCCACACATTTACTCCGCACTCACAATTGTCAATTTCAACCTGTTTTTTTTTTTTCGAGAGAGAGAGAGAGAGAGAAAGATTTCAACGTTTTTGGTGTTCATATCCTATCAATCCATCGTGCTTACTAACTCGTCCGAAGATACCGATTTCAAACAAGTAGGNCAACTGATGTCTTGTACTACCAAAAAGTTAGTAAAAAGACGTTCCGATTTTGCAGATTTACAGATGGG]
[+] EMBL AU162281 [CNCTGACGTTTCATCAGTTCTTNNAGGGCATCGGGCTCGGCGGATGCATCGTTCAGGTGATTTACCCACACATTTACTCCGCACTCACAATTGTCAATTTCAACCTGTTTTTTTTTTTTCGAGAGAGAGAGAGAGAGAGAAAGATTTCAACGTTTTTGGTGTTCATATCCTATCAATCCATCGTGCTTACTAACTCGTCCGAAGATACCGATTTCAAACAAGTAGGNCAACTGATGTCTTGTACTACCAAAAAGTTAGTAAAAAGACGTTCCGATTTTGCAGATTTACAGATGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8612#1 ------------------------------------------------------------
consensus_8612#2 ------------------------------------------------------------
consensus_8612#0 GGTTCAAAAGGCCTAGAAGAACGAAGCGGAGCTTAGCTCGCGCATGTGCCAACCTGAACC 60
consensus_8612#1 ------------------------------------------------------------
consensus_8612#2 ------------------------------------------------------------
consensus_8612#0 TCCGCTGCGAAACGCCGCGACATCTCGCCGCGCGAGCTAAGCTTAGCTGCAGGTGAGCCA 120
consensus_8612#1 ------------------------------------------------------------
consensus_8612#2 ------------------------------------------------------------
consensus_8612#0 TCGGCGATGGCGACGGCGGCGATGACCAAGGTGTTCGTCCTGCTCTTTCTGGTGGCGGCG 180
consensus_8612#1 ------------------------------------------------------------
consensus_8612#2 ------------------------------------------------------------
consensus_8612#0 TGCTACCTGCCGGCGCACGCGGCGGCAGCGGAGTGCGACTGCGCGACGGACACGGCGGGG 240
consensus_8612#1 ------------------------------------------------------------
consensus_8612#2 ------------------------------------------------------------
consensus_8612#0 CGGGACAAGGCGCAGGCGCTGCGGCTCAAGGTCATCGCCATCTTCTGCATCCTCGCCGGG 300
consensus_8612#1 ------------------------------------------------------------
consensus_8612#2 ------------------------------------------------------------
consensus_8612#0 AGCACCGTCGGGGCGGCGCTGCCGTCACTGGGCGGCAGGTTCCCGGCGATCCAGCCGGAG 360
consensus_8612#1 ------------------------------------------------------------
consensus_8612#2 ------------------------------------------------------------
consensus_8612#0 ACGGACGTGTTCCTCTCCGTCAAGGCCTTCGCCGGCGGCGTCATCCTCGCCACGGGCCTG 420
consensus_8612#1 -------------------------------------------------------AGCCT 5
consensus_8612#2 ------------------------------------------------------------
consensus_8612#0 GTGCACATCCTCCCCGCGGCCTTCGAGGCGCTCAGCTCGCCGTGCCTCGTCGGCGGCCCG 480
consensus_8612#1 TCGGAGGAGCACACCCACGNCCACGCCCACGGCATGTCCGTCATNTCNGTCGCTCCCCCC 65
consensus_8612#2 ------------------------------------------------------------
consensus_8612#0 TGGAAGCGCTTCCCGTTCGCCGGCATGGTCGCCATGGTCTCCGCCATCGGCACGCTCATC 540
consensus_8612#1 GGNGAGGAGACTTCGTCCGCCACCGGTCATTTCTCAGGTATGTCATANACATCTCCCGCC 125
consensus_8612#2 ------------------------------------------------------------
consensus_8612#0 GTCGACACCGTCGCCACGGGGTACTTCCACCGCACGGACGCCAAGAGGAAGGCCGCGGCC 600
consensus_8612#1 ACCGC--GCCATTCAAGAAACAGAGCTGCGAAAACAAAAAAACGCAACCAAA-------T 176
consensus_8612#2 ------------------------------------------------------------
consensus_8612#0 GTCGCCGACGAGCCAGCCGACGACCTGGAGGCCTCCGACGAGCACAGCCACGGCCACGCC 660
consensus_8612#1 TAAGAAAATTCAATCAAAATTTCTGTTCTTATTTTCTTAATCGATTTTGCTTGTGCGTCC 236
consensus_8612#2 ------------------------------------------------------------
consensus_8612#0 CACGGCATGTCCGTCATGTCCGTCGCTCCCGCCGGCGAGGAAGACCTCGTCCGCCACCGC 720
consensus_8612#1 TTGATGGTGGAGGNNCTGGAGCTGGGAGTGGTGGTGCACTCGCTCATCATCGGGATGTCG 296
consensus_8612#2 ------------------------------------------------------------
consensus_8612#0 GTCATCTCTCAGGTGCTGGAGCTGGGAGTGGTGGTGCACTCGCTCATCATCGGGATGTCG 780
consensus_8612#1 CTGGGCGCCTCCGACTTCCCGAGCACGGTGCGGCCGCTCGTGCCGGCGCTGACGTTTCAT 356
consensus_8612#2 ----------------------------------------------CNCTGACGTTTCAT 14
consensus_8612#0 CTGGGCGCCTCCGACTTCCCGAGCACGGTGCGGCCGCTCGTGCCGGCGCTGACGTTTCAT 840
* ************
consensus_8612#1 CAGTTCTTCGAGGGCATCGGGCTCGGCGGATGCATCGTTCAGGTGATTTACCCACACATT 416
consensus_8612#2 CAGTTCTTNNAGGGCATCGGGCTCGGCGGATGCATCGTTCAGGTGATTTACCCACACATT 74
consensus_8612#0 CAGTTCTTCGAGGGCATCGGGCTCGGCGGATGCATCGTTCAGGCAA---AGTTCCGTGTC 897
******** ********************************* * * * *
consensus_8612#1 TACTCCGCACTCACAATTGTCAATTTCAACCTGTTTTTTTTTTTTTTCGAGAGAGAGAGA 476
consensus_8612#2 TACTCCGCACTCACAATTGTCAATTTCAACCTGTTTTTTTTTTTT--CGAGAGAGAGAGA 132
consensus_8612#0 AGGTCAGTGGTGACGATGGCGCTCTTCTTCTCCCTGACGACGCCGGCCGGCATCGTCGTC 957
** * * ** ** * *** * * ** * *
consensus_8612#1 GAGAGAGAAAGATTTCCACGTTTTTGGNGCTNAN---CTNGATNTCCA----GATTACGA 529
consensus_8612#2 GAGAGAGAAAGATTTCAACGTTTTTGGTGTTCATATCCTATCAATCCATCGTGCTTACTA 192
consensus_8612#0 GGGATCGGGAT-CTCCTCCGTCTACGACGCGAACAGCCCAACGGCGCTGGTGGTGCAGGG 1016
* ** * * * * *** * * * * * * * *
consensus_8612#1 GGGC-------------------------------------------------------- 533
consensus_8612#2 ACTCGTCCGAAGATACCGATTTCAAACAAGTAGGNCAACTGATGTCTTGTACTACCAAAA 252
consensus_8612#0 GCTCCTCGAGGCGGCGGCAGCGGGGATACTCGTCTACATGGCGCTCGTCGACATCCTCGC 1076
*
consensus_8612#1 ------------------------------------------------------------
consensus_8612#2 AGTTAGTAAAAAGACGTTCCGATTTTGCAGATTTACAGATGGG----------------- 295
consensus_8612#0 CGAGGACTTCATGAAGACCAAGGTGCAGAGAAGGGGACGCCTGCAGCTCGCCATGAACGT 1136
consensus_8612#1 ------------------------------------------------------------
consensus_8612#2 ------------------------------------------------------------
consensus_8612#0 CGCGTTGCTGCTCGGCGCAGGGCTCATGTCCATGATCGCCATCTGGGCGTGATGAGTGAG 1196
consensus_8612#1 ------------------------------------------------------------
consensus_8612#2 ------------------------------------------------------------
consensus_8612#0 TGACCATCACGGCCAGCATGCGACGTGCGGCGTTTCAATTTGTTCGGCAGGAATGGCAGG 1256
consensus_8612#1 ------------------------------------------------------------
consensus_8612#2 ------------------------------------------------------------
consensus_8612#0 TTTTTGTTCTTAGGCGCGTCTGATCACGCTCGCGCTCTCGCGAAGACCTGAGAATTCGTT 1316
consensus_8612#1 ------------------------------------------------------------
consensus_8612#2 ------------------------------------------------------------
consensus_8612#0 CGAGGATCTCAAAAGAGAGACCACTCCGTTGGTTGAAACTGACGAGGAGAGGGGTCTCCC 1376
consensus_8612#1 ------------------------------------------------------------
consensus_8612#2 ------------------------------------------------------------
consensus_8612#0 GTGCACGATATGTAGAACAGTTCAGTGACCATGTTACTCTGACTTGACTGACTGACCCGT 1436
consensus_8612#1 ------------------------------------------------------------
consensus_8612#2 ------------------------------------------------------------
consensus_8612#0 CATCGTCGTCGTTGCTCTCTTACTGTGCAGAACTTGTAGAGTCGTGCACTTGCGCCTACC 1496
consensus_8612#1 ------------------------------------------------------------
consensus_8612#2 ------------------------------------------------------------
consensus_8612#0 ACTGTCCTTCATCTTGGAGGACAATAATGCCAGTGGTGGGCAGAATTCTGGTCTTGATGT 1556
consensus_8612#1 ------------------------------------------------------------
consensus_8612#2 ------------------------------------------------------------
consensus_8612#0 GAATCCGTGATGTACGGGGTAAGACAAGGCTCGTGAATGAGTATACTCCATATCTGTAAA 1616
consensus_8612#1 ------------------------------------------------------
consensus_8612#2 ------------------------------------------------------
consensus_8612#0 GCTCTATCATATCCGAAGGTCATCACGAGTTAGTTAGAGTGTTAAAAAAAAAAA 1670
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||