cluster # 8659

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Oryza sativa
cluster # 8659 cluster # 8659 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8659#0 length = 797 sequences # 4

consensus_8659#1 length = 347 sequences # 1

consensusID : consensus_8659#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 797
fasta sequence

                              [AGCTAAGCTAATAAGAGCAAGCTTAGAACAAGAACACATCACTGTCTCCTAGCTAAGCTAGCCAATTCAATTCAAACACACAGAAATTCAGACGACGGCGACGACGATGTTTCGCCGCGCCGCCATGGCCGCCGCCGCACCCTCCGACAGCGAGGTGAGGGTTCAGAAGGTGGACAAGCT-GGACCT-CGTCTTCAACAT-CCTGACAAAG-CCGCCGGTGTACG-GCGCCGGCAAAGGTAACAACCCTCCAAAAGCTCCAGCACCAAGGCGACCGGCGGCTACCGGCGGCGACCATGGCAGCGGCGGCGCCGTCGCCGGCAGGAAGCAGCCGGGCGTCGTGTCGATAGAGGACATCAACAAGAGGTCTGAAAACTACAT-CAGGGACAGGAAGAGGAT-GTTC-TTTGGCCAAAA-TTAGTCCAAATTAGTTTCGAGCTCGA-TCA-TGGAAATTAATTGAAGTGTTAAGAT-CGGTCTGCATGATGTGATATTTGCACTGTATTACGTACGTATATACGGATGTATGCATGCATAAATATGGGGAAAATAATTAGCCCCTGATCGATGGGCGCTTGTGTTGTAAAATATTTACCTGAAATATATGAATAGCTTGCTATATGTTGACTGTGTTTTCAAGAGATTTTTAATTTTCAGAGACTGAACTTCATAGGCTATAGTTAGTGCTTATATAAGGATAAGGACGACTGTAAATTAAATTTTTTTTGTGAGGATTTTCTAGCTAGGTTGCCTACTGTAAGAAATTGTACAATTTTCAATACAAACATTACACATTATTAATCAAAAAA]

[+] EMBL AK107722             [AGCTAAGCTAATAAGAGCAAGCTTAGAACAAGAACACATCACTGTCTCCTAGCTAAGCTAGCCAATTCAATTCAAACACACAGAAATTCAGACGACGGCGACGACGATGTTTCGCCGCGCCGCCATGGCCGCCGCCGCACCCTCCGACAGCGAGGTGAGGGTTCAGAGGGTGGACAAGCT GGACCT CGTCTTCAACAT CCTGACAAAG CCGCCGGTGTACG GCGCCGGCAAAGGTAACAACCCTCCAAAAGCTCCAGCACCAAGGCGACCGGCGGCTACCGGCGGCGACCATGGCAGCGGCGGCGCCGTCGCCGGCAGGAAGCAGCCGGGCGTCGTGTCGATAGAGGACATCAACAAGAGGTCTGAAAACTACAT CAGGGACAGGAAGAGGAT GTTC TTTGGCCAAAA TTAGTCCAAATTAGTTTCGAGCTCGA TCA TGGAAATTAATTGAAGTGTTAAGAT CGGTCTGCATGATGTGATATTTGCACTGTATTACGTACGTATATACGGATGTATGCATGCATAAATATGGGGAAAATAATTAGCCCCTGATCGATGGGCGCTTGTGTTGTAAAATATTTACCTGAAATATATGA                                                                                                                                                                                                         ]
[+] EMBL OSC1021              [           TAAGAGCAAGCTTAGAACAAGAACACATCACTGTCTCCTAGCTAAGCTAGCCAATTCAATTCAAACACACAGAAATTCAGACGACGGCGACGACGATGTTTCGCCGCGCCGCCATGGCCGCCGNCGCACCCTCCGACAGCGAGGTGAGGGTTCAGAAGGTGGACAAGCT GGACCT CGTCTTCAACAT CCTGACAAAG CCGCCGGTGTACGCGC CCGGCAAAGGTAACAACCCTCCAAAAGCTCCAGCACCAAGGCGACCGGCGGTTACCGGCGGCGACCATGGCAGCGGCGGCG CGTCG CGGCAGGAAGCAGCCGGGCGTCGTGTCGATAGAGGACATCAACAAGAGGTCTGAAAACTACAT CAGGGACAGGAAGAGG T TNTC TTTGGCC AAA TTAGTCCAAAT                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU082261             [                            CAAGAACACATCACTGTCTCCTAGCTAAGCTAGCCAATTCAATTCAAACACACAGAAATTCAGACGACGGCGACGACGATGTTTCGCCGCGCCGCCATGGCCGCCGCCGCACCCTCCGACAGCGAGGTGAGGGTTCAGAAGGTGGACAAGCT GGACCT CGTCTTCAACAT CCTGACAAAG CCGCCGGTGTACG GCGCCGGCAAAGGTAACAACCCTCCAAAAGCTCCAGCACCAAGGCGACCGGCGGCTACCGGCGGCGACCATGGCAGCGGCGGCGCCGTCGCCGGCAGGAAGCAGCTGGGCGTCGTGTCGATAGANGACATCAACAAGAGGTCTGAAAACTACAT CAGGGACAGGAAGAGGAT GTTCTTTTGGCCAAAATTTAGTCCCAATTAGTTTCGAGCTCGATTCATTGGAATTTAATTGAAGT                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU032290             [                                                                                                                                                                 TTCAGAAGTTGNACAAGCTGGGACCTCCGTCTTCAACATCCCTGACAAAGCCCCCCGGTGTACG GCGCCGGCAAAGGTNANAACCCTCCAAAAGCTCCAGCACCAAGGCGACCGGCGGCTACCGGCGGCGACCATGGCNGCGGCGGCCCCNTCGCCGGCAGGAAGCAGCCGGGCGTCGTGTCGATAGAGGNCATCAACAAGAGGTCTGAAAACTACATCCAGGGACAGGAAGAGGATGGTTC TTTGGCCAAAA TTAGTCCAAATTAGTTTCGAGCTCGA TCA TGGAAATTAATTGAAGTGTTAAGATCCGGTCTGCATGATGTGATATTTGCACTGTATTACGTACGTATATACGGATGTATGCATGCATAAATATGGGGAAAATAATTAGCCCCTGATCGATGGGCGCTTGTGTTGTAAAATATTTACCTGAAATATATGAATAGCTTGCTATATGTTGACTGTGTTTTCAAGAGATTTTTAATTTTCAGAGACTGAACTTCATAGGCTATAGTTAGTGCTTATATAAGGATAAGGACGACTGTAAATTAAATTTTTTTTGTGAGGATTTTCTAGCTAGGTTGCCTACTGTAAGAAATTGTACAATTTTCAATACAAACATTACACATTATTAATCAAAAAA]




>consensus_8659#0
AGCTAAGCTAATAAGAGCAAGCTTAGAACAAGAACACATCACTGTCTCCTAGCTAAGCTA
GCCAATTCAATTCAAACACACAGAAATTCAGACGACGGCGACGACGATGTTTCGCCGCGC
CGCCATGGCCGCCGCCGCACCCTCCGACAGCGAGGTGAGGGTTCAGAAGGTGGACAAGCT
GGACCTCGTCTTCAACATCCTGACAAAGCCGCCGGTGTACGGCGCCGGCAAAGGTAACAA
CCCTCCAAAAGCTCCAGCACCAAGGCGACCGGCGGCTACCGGCGGCGACCATGGCAGCGG
CGGCGCCGTCGCCGGCAGGAAGCAGCCGGGCGTCGTGTCGATAGAGGACATCAACAAGAG
GTCTGAAAACTACATCAGGGACAGGAAGAGGATGTTCTTTGGCCAAAATTAGTCCAAATT
AGTTTCGAGCTCGATCATGGAAATTAATTGAAGTGTTAAGATCGGTCTGCATGATGTGAT
ATTTGCACTGTATTACGTACGTATATACGGATGTATGCATGCATAAATATGGGGAAAATA
ATTAGCCCCTGATCGATGGGCGCTTGTGTTGTAAAATATTTACCTGAAATATATGAATAG
CTTGCTATATGTTGACTGTGTTTTCAAGAGATTTTTAATTTTCAGAGACTGAACTTCATA
GGCTATAGTTAGTGCTTATATAAGGATAAGGACGACTGTAAATTAAATTTTTTTTGTGAG
GATTTTCTAGCTAGGTTGCCTACTGTAAGAAATTGTACAATTTTCAATACAAACATTACA
CATTATTAATCAAAAAA

consensusID : consensus_8659#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 347
fasta sequence

                              [GCGACCGGCGGCTACCGGCGGCNGACCATGGCAGCGGCGGCACCTGTCNGCCGGCAGGAAGCAGCCGGGCGTCGTGTCGATAGAGGACATCAACAAGAGGTCTGAAAACTACATCAGGGACAGGAAGAGGATGTTCTTTGGCCAAAATTAGTCCAAATTAGTTTCGAGCTCGATCATGGAAATTAATTGAAGTGTTAAGATCGGTCTGCATGATGTGATATTTGCACTGTATTACGTACGTATATACGGATGTATGCATGCATAAATATGGGGAAAATAATTAGCCCCTGATCGATGGGCGCTTGTGTTGTAAAATATTTACCTGAAATAAAAAAAAAAAAAAAAAA]

[+] EMBL AU102022             [GCGACCGGCGGCTACCGGCGGCNGACCATGGCAGCGGCGGCACCTGTCNGCCGGCAGGAAGCAGCCGGGCGTCGTGTCGATAGAGGACATCAACAAGAGGTCTGAAAACTACATCAGGGACAGGAAGAGGATGTTCTTTGGCCAAAATTAGTCCAAATTAGTTTCGAGCTCGATCATGGAAATTAATTGAAGTGTTAAGATCGGTCTGCATGATGTGATATTTGCACTGTATTACGTACGTATATACGGATGTATGCATGCATAAATATGGGGAAAATAATTAGCCCCTGATCGATGGGCGCTTGTGTTGTAAAATATTTACCTGAAATAAAAAAAAAAAAAAAAAA]




>consensus_8659#1
GCGACCGGCGGCTACCGGCGGCNGACCATGGCAGCGGCGGCACCTGTCNGCCGGCAGGAA
GCAGCCGGGCGTCGTGTCGATAGAGGACATCAACAAGAGGTCTGAAAACTACATCAGGGA
CAGGAAGAGGATGTTCTTTGGCCAAAATTAGTCCAAATTAGTTTCGAGCTCGATCATGGA
AATTAATTGAAGTGTTAAGATCGGTCTGCATGATGTGATATTTGCACTGTATTACGTACG
TATATACGGATGTATGCATGCATAAATATGGGGAAAATAATTAGCCCCTGATCGATGGGC
GCTTGTGTTGTAAAATATTTACCTGAAATAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8659#0      AGCTAAGCTAATAAGAGCAAGCTTAGAACAAGAACACATCACTGTCTCCTAGCTAAGCTA 60
consensus_8659#1      ------------------------------------------------------------
                                                                                  

consensus_8659#0      GCCAATTCAATTCAAACACACAGAAATTCAGACGACGGCGACGACGATGTTTCGCCGCGC 120
consensus_8659#1      ------------------------------------------------------------
                                                                                  

consensus_8659#0      CGCCATGGCCGCCGCCGCACCCTCCGACAGCGAGGTGAGGGTTCAGAAGGTGGACAAGCT 180
consensus_8659#1      ------------------------------------------------------------
                                                                                  

consensus_8659#0      GGACCTCGTCTTCAACATCCTGACAAAGCCGCCGGTGTACGGCGCCGGCAAAGGTAACAA 240
consensus_8659#1      ------------------------------------------------------------
                                                                                  

consensus_8659#0      CCCTCCAAAAGCTCCAGCACCAAGGCGACCGGCGGCTACCGGCGGCG-ACCATGGCAGCG 299
consensus_8659#1      ------------------------GCGACCGGCGGCTACCGGCGGCNGACCATGGCAGCG 36
                                              **********************  ************

consensus_8659#0      GCGGCGCCG--TCGCCGGCAGGAAGCAGCCGGGCGTCGTGTCGATAGAGGACATCAACAA 357
consensus_8659#1      GCGGCACCTGTCNGCCGGCAGGAAGCAGCCGGGCGTCGTGTCGATAGAGGACATCAACAA 96
                      ***** **     ***********************************************

consensus_8659#0      GAGGTCTGAAAACTACATCAGGGACAGGAAGAGGATGTTCTTTGGCCAAAATTAGTCCAA 417
consensus_8659#1      GAGGTCTGAAAACTACATCAGGGACAGGAAGAGGATGTTCTTTGGCCAAAATTAGTCCAA 156
                      ************************************************************

consensus_8659#0      ATTAGTTTCGAGCTCGATCATGGAAATTAATTGAAGTGTTAAGATCGGTCTGCATGATGT 477
consensus_8659#1      ATTAGTTTCGAGCTCGATCATGGAAATTAATTGAAGTGTTAAGATCGGTCTGCATGATGT 216
                      ************************************************************

consensus_8659#0      GATATTTGCACTGTATTACGTACGTATATACGGATGTATGCATGCATAAATATGGGGAAA 537
consensus_8659#1      GATATTTGCACTGTATTACGTACGTATATACGGATGTATGCATGCATAAATATGGGGAAA 276
                      ************************************************************

consensus_8659#0      ATAATTAGCCCCTGATCGATGGGCGCTTGTGTTGTAAAATATTTACCTGAAATATATGAA 597
consensus_8659#1      ATAATTAGCCCCTGATCGATGGGCGCTTGTGTTGTAAAATATTTACCTGAAATAAAAAAA 336
                      ****************************************************** *  **

consensus_8659#0      TAGCTTGCTATATGTTGACTGTGTTTTCAAGAGATTTTTAATTTTCAGAGACTGAACTTC 657
consensus_8659#1      AAAAAAAAAAA------------------------------------------------- 347
                       *       *                                                  

consensus_8659#0      ATAGGCTATAGTTAGTGCTTATATAAGGATAAGGACGACTGTAAATTAAATTTTTTTTGT 717
consensus_8659#1      ------------------------------------------------------------
                                                                                  

consensus_8659#0      GAGGATTTTCTAGCTAGGTTGCCTACTGTAAGAAATTGTACAATTTTCAATACAAACATT 777
consensus_8659#1      ------------------------------------------------------------
                                                                                  

consensus_8659#0      ACACATTATTAATCAAAAAA 797
consensus_8659#1      --------------------