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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8663#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1217 fasta sequence
[ATCGCCCCCGTCACCCTCTCTGCGCTGCTGCTGCTGCTTCCGATGGCGGCGCCTCCGCTTCCCCGCGCCCCCGTCTCCTCCTCCGCCGCCGCCGCGTCGCCGGGGGGCCGCGCTCTCCTCCTCCTCCGCGTCGGCGGAGGAGGTTCCGGAAGATGCGCTGGCGTGGCGGCGGCGGCGGCACCGGGTTGGCGGCGGCCGTTCCCGGCTGCCTCCGTCGCGGCGCGCTCGGCTGGTACCACGCCGGGAGAGGTCGCCGTCGATCCTAAGGTCGAAGCAATACTAGACAGTGTGAAGTGGGACAGTAAAGGCTTGGCTGTTGCTATTGCCCAAAATGTGGATACTGGAGCCATTCTCATGCAGGGTTTTGCCAACAAAGAAGCCCTTGCAACAACTATATCAACCAGGAAAGCTACATTCTATAGCCGTTCACGGTCTTCATTGTGGACAAAAGGGGAGACATCAATGAATTTCATCAATGTGCATGACATTTTCTTGGACTGTGACCGTGATTCTATAATATACCTTGGGAAGCCAGATGGGCCTACTTGCCATACAGGGGCAGAGACTTGTTACTATACTTCAGTCTATGATGCTCTACAAGGTTCGAAGCCCAATCAAGATAGGCAGGTTGTCTCAACTCTGTACTCACTTGAAGATACAATTAGTAGACGGAAGGAAGAGATAGTTACTGAAGGAAGTGGCAAGCCATCATGGACAAAAAAACTAATACTTGATAACCGGCTGCTTTGCTCAAAAATAAGCGAAGAAGCTGGAGAGCTAAACCAAACACTGCTTGAGAACGAGGACGAGAGCCGCACAATCAGTGAGATGGGTGATTTGCTATACCACGCGATGGTGCTGCTTAGGGTCAAGGGCGTGAGGATGGAACAGGTCTTGGAGGTCCTCAGGAAGCGATTCTCGCAGTCTGGTATTGAGGAGAAGGCCAGTCGCAACAAATCTTAGGATATTACTCACAGAGTGGATGGGTTTACCAGTTTGCTTATGTCGTATCGGCATTGGTGCCAAGTGTGTACCATTGAGTAGTTTGGTCTTCTTAATTAGACCGAAGGTTGTGAATTGTGATTATGCTTTAATTGTTCTCCAATAAGACACTGAGCAAATACATGTCTGGAATTTGCAGTGCTGTTCTTGCTGTCGCCAATAAAATAATAAAATCAGCTCATAAGTAAAGCATCTTCCTGATTTGATGAAAAAAA]
[+] EMBL AK061002 [ATCGCCCCCGTCACCCTCTCTGCGCTGCTGCTGCTGCTTCCGATGGCGGCGCCTCCGCTTCCCCGCGCCCCCGTCTCCTCCTCCGCCGCCGCCGCGTCGCCGGGGGGCCGCGCTCTCCTCCTCCTCCGCGTCGGCGGAGGAGGTTCCGGAAGATGCGCTGGCGTGGCGGCGGCGGCGGCACCGGGTTGGCGGCGGCCGTTCCCGGCTGCCTCCGTCGCGGCGCGCTCGGCTGGTACCACGCCGGGAGAGGTCGCCGTCGATCCTAAGGTCGAAGCAATACTAGACAGTGTGAAGTGGGACAGTAAAGGCTTGGCTGTTGCTATTGCCCAAAATGTGGATACTGGAGCCATTCTCATGCAGGGTTTTGCCAACAAAGAAGCCCTTGCAACAACTATATCAACCAGGAAAGCTACATTCTATAGCCGTTCACGGTCTTCATTGTGGACAAAAGGGGAGACATCAATGAATTTCATCAATGTGCATGACATTTTCTTGGACTGTGACCGTGATTCTATAATATACCTTGGGAAGCCAGATGGGCCTACTTGCCATACAGGGGCAGAGACTTGTTACTATACTTCAGTCTATGATGCTCTACAAGGTTCGAAGCCCAATCAAGATAGGCAGGTTGTCTCAACTCTGTACTCACTTGAAGATACAATTAGTAGACGGAAGGAAGAGATAGTTACTGAAGGAAGTGGCAAGCCATCATGGACAAAAAAACTAATACTTGATAACCGGCTGCTTTGCTCAAAAATAAGCGAAGAAGCTGGAGAGCTAAACCAAACACTGCTTGAGAACGAGGACGAGAGCCGCACAATCAGTGAGATGGGTGATTTGCTATACCACGCGATGGTGCTGCTTAGGGTCAAGGGCGTGAGGATGGAACAGGTCTTGGAGGTCCTCAGGAAGCGATTCTCGCAGTCTGGTATTGAGGAGAAGGCCAGTCGCAACAAATCTTAGGATATTACTCACAGAGTGGATGGGTTTACCAGTTTGCTTATGTCGTATCGGCATTGGTGCCAAGTGTGTACCATTGAGTAGTTTGGTCTTCTTAATTAGACCGAAGGTTGTGAATTGTGATTATGCTTTAATTGTTCTCCAATAAGACACTGAGCAAATACATGTCTGGAATTTGCAGTGCTGTTCTTGCTGTCGCCAATAAAATAATAAAATCAGCTCA ]
[+] EMBL AK099335 [ TTCCGATGGCGGCGCCTCCGCTTCCCCGCGCCCCCGTCTCCTCCTCCGCCGCCGCCGCGTCGCCGGGGGGCCGCGCTCTCCTCCTCCTCCGCGTCGGCGGAGGAGGTTCCGGAAGATGCGCTGGCGTGGCGGCGGCGGCGGCACCGGGTTGGCGGCGGCCGTTCCCGGCTGCCTCCGTCGCGGCGCGCTCGGCTGGTACCACGCCGGGAGAGGTCGCCGTCGATCCTAAGGTCGAAGCAATACTAGACAGTGTGAAGTGGGACAGTAAAGGCTTGGCTGTTGCTATTGCCCAAAATGTGGATACTGGAGCCATTCTCATGCAGGG TCTGCCAACAAAGAAGCCCTTGCAACAACTATATCAACCAGGAAAGCTACATTCTATAGCCGTTCACGGTCTTCATTGTGGACAAAAGGGGAGACATCAATGAATTTCATCAATGTGCATGACATTTTCTTGGACTGTGACCGTGATTCTATAATATACCTTGGGAAGCCAGATGGGCCTACTTGCCATACAGGGGCAGAGACTTGTTACTATACTTCAGTCTATGATGCTCTACAAGGTTCGAAGCCCAATCAAGATAGGCAGGTTGTCTCAACTCTGTACTCACTTGAAGATACAATTAGTAGACGGAAGGAAGAGATAGTTACTGAAGGAAGTGGCAAGCCATCATGGACAAAAAAACTAATACTTGATAACCGGCTGCTTTGCTCAAAAATAAGCGAAGAAGCTGGAGAGCTAAACCAAACACTGCTTGAGAACGAGGACGAGAGCCGCACAATCAGTGAGATGGGTGATTTGCTATACCACGCGATGGTGCTGCTTAGGGTCAAGGGCGTGAGGATGGAACAGGTCTTGGAGGTCCTCAGGAAGCGATTCTCGCAGTCTGGTATTGAGGAGAAGGCCAGTCGCAACAAATCTTAGGATATTACTCACAGAGTGGATGGGTTTACCAGTTTGCTTATGTCGTATCGGCATTGGTGCCAAGTGTGTACCATTGAGTAGTTTGGTCTTCTTAATTAGACCGAAGGTTGTGAATTGTGATTATGCTTTAATTGTTCTCCAATAAGACACTGAGCAAATACATGTCTGGAATTTGCAGTGCTGTTCTTGCTGTCGCCAATAAAATAATAAAATCA ]
[+] EMBL CF307732 [ ACTCACAGAGTGGATGGGTTTACCAGTTTGCTTATGTCGTATCGGCATTGGTGCCAAGTGTGTACCATTGAGTAGTTTGGTCTTCTTAATTAGACCGAAGGTTGTGAATTGTGATTATGCTTTAATTGTTCTCCAATAAGACACTGAGCAAATACATGTCTGGAATTTGCAGTGCTGTTCTTGCTGTCGCCAATAAAATAATAAAATCAGCTCATAAGTAAAGCATCTTCCTGATTTGATGAAAAAAA]
consensusID : consensus_8663#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1010 fasta sequence
[GCACCGGGTTGGCGGCGGCACCGGGTTGGCGGCGGCCGTTCCCGGCTGCCTCCGTCGCGGCGCGCTCGGCTGGTACCACGCCGGGAGAGGTCGCCGTCGATCCTAAGGTCGAAGCAATACTAGACAGTGTGAAGTGGGACAGTAAAGGCTTGGCTGTTGCTATTGCCCAAAATGTGGATACTGGAGCCATTCTCATGCAGGGTTTTGCCAACAAAGAAGCCCTTGCAACAACTATATCAACCAGGAAAGCTACATTCTATAGCCGTTCACGGTCTTCATTGTGGACAAAAGGGGAGACATCAATGAATTTCATCAATGTGCATGACATTTTCTTGGACTGTGACCGTGATTCTATAATATACCTTGGGAAGCCAGATGGGCCTACTTGCCATACAGGGGCAGAGACTTGTTACTATACTTCAGTCTATGATGCTCTACAAGGTTCGAAGCCCAATCAAGATAGGCAGGTTGTCTCAACTCTGTACTCACTTGAAGATACAATTAGTAGACGGAAGGAAGAGATAGTTACTGAAGGAAGTGGCAAGCCATCATGGACAAAAAAACTAATACTTGATAACCGGCTGCTTTGCTCAAAAATAAGCGAAGAAGCTGGAGAGCTAAACCAAACACTGCTTGAGAACGAGGACGAGAGCCGCACAATCAGTGAGATGGGTGATTTGCTATACCACGCGATGGTGCTGCTTAGGGTCAAGGGCGTGAGGATGGAACAGGTCTTGGAGGTCCTCAGGAAGCGATTCTCCCAGTTTGGTATTGAGGAGAAGGCCAGTCGCAACAAATTTTAGCATATTACTCACAGAGTGGATGGGTTTACCAGTTTGCTTATGTCGTATGGGCATTGGTGCCAAGTGTGTACCATTGAGTAGTTTGGTCTTTTTAATTAGACCGAAGGTTGTGAATTGTGATTATGCCTTAATTGTTTTCCAATAAGACCCTGAGCAAATACATGTTTGGAATTTGCAGTGCTAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BP184582 [GCACCGGGTTGGCGGCGGCACCGGGTTGGCGGCGGCCGTTCCCGGCTGCCTCCGTCGCGGCGCGCTCGGCTGGTACCACGCCGGGAGAGGTCGCCGTCGATCCTAAGGTCGAAGCAATACTAGACAGTGTGAAGTGGGACAGTAAAGGCTTGGCTGTTGCTATTGCCCAAAATGTGGATACTGGAGCCATTCTCATGCAGGGTTTTGCCAACAAAGAAGCCCTTGCAACAACTATATCAACCAGGAAAGCTACATTCTATAGCCGTTCACGGTCTTCATTGTGGACAAAAGGGGAGACATCAATGAATTTCATCAATGTGCATGACATTTTCTTGGACTGTGACCGTGATTCTATAATATACCTTGGGAAGCCAGATGGGCCTACTTGCCATACAGGGGCAGAGACTTGTTACTATACTTCAGTCTATGATGCTCTACAAGGTTCGAAGCCCAATCAAGATAGGCAGGTTGTCTCAACTCTGTACTCACTTGAAGATACAATTAGTAGACGGAAGGAAGAGATAGTTACTGAAGGAAGTGGCAAGCCATCATGGACAAAAAAACTAATACTTGATAACCGGCTGCTTTGCTCAAAAATAAGCGAAGAAGCTGGAGAGCTAAACCAAACACTGCTTGAGAACGAGGACGAGAGCCGCACAATCAGTGAGATGGGTGATTTGCTATACCACGCGATGGTGCTGCTTAGGGTCAAGGGCGTGAGGATGGAA ]
[-] EMBL CA763228 [ acaAGGGGCAGAGACTTGTTACTATACTTCAGTCTATGATGCTCTACAAGGTTCGAAGCCCAATCAAGATAGGCAGGTTGTTTCAACTCTGTACTCCCTTGAAGATCCAATTAGTAGACGGAAGGAAGAGATAGTTACTGAAGGAAGTGGCAAGCCATCATGGCCAAAAAAACTAATACTTGATAACCGGCTGCTTTGCTCAAAAATAAGCGAAGAAGCTGGAGAGCTAAACCAAACCCTGCTTGAGAATGAGGCCGAGAGCCGCCCAATCAGTGAGATGGGTGATTTGCTATACCCCGCGATGGTGCTGCTTAGGGTCAAGGGCGTGAGGATGGAACAGGTCTTGGAGGTCCTCAGGAAGCGATTCTCCCAGTTTGGTATTGAGGAGAAGGCCAGTCGCAACAAATTTTAGCATATTACTCACAGAGTGGATGGGTTTACCAGTTTGCTTATGTCGTATGGGCATTGGTGCCAAGTGTGTACCATTGAGTAGTTTGGTCTTTTTAATTAGACCGAAGGTTGTGAATTGTGATTATGCCTTAATTGTTTTCCAATAAGACCCTGAGCAAATACATGTTTGGAATTTGCAGTGCTAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8663#0 ATCGCCCCCGTCACCCTCTCTGCGCTGCTGCTGCTGCTTCCGATGGCGGCGCCTCCGCTT 60
consensus_8663#1 ------------------------------------------------------------
consensus_8663#0 CCCCGCGCCCCCGTCTCCTCCTCCGCCGCCGCCGCGTCGCCGGGGGGCCGCGCTCTCCTC 120
consensus_8663#1 ------------------------------------------------------------
consensus_8663#0 CTCCTCCGCGTCGGCGGAGGAGGTTCCGGAAGATGCGCTGGCGTGGCGGCGGCGGCGGCA 180
consensus_8663#1 ----------------------------------------GCACCGGGTTGGCGGCGGCA 20
** * * **********
consensus_8663#0 CCGGGTTGGCGGCGGCCGTTCCCGGCTGCCTCCGTCGCGGCGCGCTCGGCTGGTACCACG 240
consensus_8663#1 CCGGGTTGGCGGCGGCCGTTCCCGGCTGCCTCCGTCGCGGCGCGCTCGGCTGGTACCACG 80
************************************************************
consensus_8663#0 CCGGGAGAGGTCGCCGTCGATCCTAAGGTCGAAGCAATACTAGACAGTGTGAAGTGGGAC 300
consensus_8663#1 CCGGGAGAGGTCGCCGTCGATCCTAAGGTCGAAGCAATACTAGACAGTGTGAAGTGGGAC 140
************************************************************
consensus_8663#0 AGTAAAGGCTTGGCTGTTGCTATTGCCCAAAATGTGGATACTGGAGCCATTCTCATGCAG 360
consensus_8663#1 AGTAAAGGCTTGGCTGTTGCTATTGCCCAAAATGTGGATACTGGAGCCATTCTCATGCAG 200
************************************************************
consensus_8663#0 GGTTTTGCCAACAAAGAAGCCCTTGCAACAACTATATCAACCAGGAAAGCTACATTCTAT 420
consensus_8663#1 GGTTTTGCCAACAAAGAAGCCCTTGCAACAACTATATCAACCAGGAAAGCTACATTCTAT 260
************************************************************
consensus_8663#0 AGCCGTTCACGGTCTTCATTGTGGACAAAAGGGGAGACATCAATGAATTTCATCAATGTG 480
consensus_8663#1 AGCCGTTCACGGTCTTCATTGTGGACAAAAGGGGAGACATCAATGAATTTCATCAATGTG 320
************************************************************
consensus_8663#0 CATGACATTTTCTTGGACTGTGACCGTGATTCTATAATATACCTTGGGAAGCCAGATGGG 540
consensus_8663#1 CATGACATTTTCTTGGACTGTGACCGTGATTCTATAATATACCTTGGGAAGCCAGATGGG 380
************************************************************
consensus_8663#0 CCTACTTGCCATACAGGGGCAGAGACTTGTTACTATACTTCAGTCTATGATGCTCTACAA 600
consensus_8663#1 CCTACTTGCCATACAGGGGCAGAGACTTGTTACTATACTTCAGTCTATGATGCTCTACAA 440
************************************************************
consensus_8663#0 GGTTCGAAGCCCAATCAAGATAGGCAGGTTGTCTCAACTCTGTACTCACTTGAAGATACA 660
consensus_8663#1 GGTTCGAAGCCCAATCAAGATAGGCAGGTTGTCTCAACTCTGTACTCACTTGAAGATACA 500
************************************************************
consensus_8663#0 ATTAGTAGACGGAAGGAAGAGATAGTTACTGAAGGAAGTGGCAAGCCATCATGGACAAAA 720
consensus_8663#1 ATTAGTAGACGGAAGGAAGAGATAGTTACTGAAGGAAGTGGCAAGCCATCATGGACAAAA 560
************************************************************
consensus_8663#0 AAACTAATACTTGATAACCGGCTGCTTTGCTCAAAAATAAGCGAAGAAGCTGGAGAGCTA 780
consensus_8663#1 AAACTAATACTTGATAACCGGCTGCTTTGCTCAAAAATAAGCGAAGAAGCTGGAGAGCTA 620
************************************************************
consensus_8663#0 AACCAAACACTGCTTGAGAACGAGGACGAGAGCCGCACAATCAGTGAGATGGGTGATTTG 840
consensus_8663#1 AACCAAACACTGCTTGAGAACGAGGACGAGAGCCGCACAATCAGTGAGATGGGTGATTTG 680
************************************************************
consensus_8663#0 CTATACCACGCGATGGTGCTGCTTAGGGTCAAGGGCGTGAGGATGGAACAGGTCTTGGAG 900
consensus_8663#1 CTATACCACGCGATGGTGCTGCTTAGGGTCAAGGGCGTGAGGATGGAACAGGTCTTGGAG 740
************************************************************
consensus_8663#0 GTCCTCAGGAAGCGATTCTCGCAGTCTGGTATTGAGGAGAAGGCCAGTCGCAACAAATCT 960
consensus_8663#1 GTCCTCAGGAAGCGATTCTCCCAGTTTGGTATTGAGGAGAAGGCCAGTCGCAACAAATTT 800
******************** **** ******************************** *
consensus_8663#0 TAGGATATTACTCACAGAGTGGATGGGTTTACCAGTTTGCTTATGTCGTATCGGCATTGG 1020
consensus_8663#1 TAGCATATTACTCACAGAGTGGATGGGTTTACCAGTTTGCTTATGTCGTATGGGCATTGG 860
*** *********************************************** ********
consensus_8663#0 TGCCAAGTGTGTACCATTGAGTAGTTTGGTCTTCTTAATTAGACCGAAGGTTGTGAATTG 1080
consensus_8663#1 TGCCAAGTGTGTACCATTGAGTAGTTTGGTCTTTTTAATTAGACCGAAGGTTGTGAATTG 920
********************************* **************************
consensus_8663#0 TGATTATGCTTTAATTGTTCTCCAATAAGACACTGAGCAAATACATGTCTGGAATTTGCA 1140
consensus_8663#1 TGATTATGCCTTAATTGTTTTCCAATAAGACCCTGAGCAAATACATGTTTGGAATTTGCA 980
********* ********* *********** **************** ***********
consensus_8663#0 GTGCTGTTCTTGCTGTCGCCAATAAAATAATAAAATCAGCTCATAAGTAAAGCATCTTCC 1200
consensus_8663#1 GTGCTA-----AAAAAAAAAAAAAAAAAAAAAAAA------------------------- 1010
***** ** **** ** ****
consensus_8663#0 TGATTTGATGAAAAAAA 1217
consensus_8663#1 -----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||