cluster # 8677

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Oryza sativa
cluster # 8677 cluster # 8677 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8677#0 length = 842 sequences # 3

consensus_8677#1 length = 520 sequences # 1
consensus_8677#2 length = 261 sequences # 1

consensusID : consensus_8677#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 842
fasta sequence

                              [GAGCAACACACCAAGAAGGCCAGAGAGATTCAGAGAACTACACCGAGAAGGCGAGATTGTTTGCGTGGTTGGTAATTTGGCCGGCCTTGATCGATCGAGCGGAGAAGAGAAGAAAAAGATGGCGGGGAGCGGTGTCCTGGAGGTGCATCTCGTCGACGCCAAGGGCCTCACCGGCAACGACTTCCTAGGTGAGATAGGCAACATACACCCGTACGTGGTGGTGCAGTACCGGAGCCAGGAGCGCAAGAGCAGCGTCGCCAGAGATCAAGGGAAGAACCCGAGCTGGAACGAGGTGTTCAAGTTCCAGATCAACTCCACGGCGGCGACCGGGCAGCACAAGCTCTTTCTGCGGCTCATGGACCACGACACCTTCTCACGGGACGACTTCCTCGGCGAAGCAACGATCAACGTGACTGACCTGATCAGCTTAGGCATGGAGCACGGCACATGGGAGATGAGCGAATCCAAGCACCGGGTCGTCCTCGCGGACAAAACATACCACGGCG-AGATCAGAGTCAGCCTCACGTTCACGGCTTCTGCAAAGGCTCAAGACCACGCAGAACAGGTTGGAGGATGGGCGCACAGCTTTCGTCAGTAGAAAGATTGTGAACTTCAAGTCTATAATCAGTTGGGGCCTGTGGGAGGTTTAGATAAGTATACTATAGTACTAGCAAGGTAGGATTTTGTGAGTAACAACGGCATCTAATGCCCAAGATTGATGTGGTTCGAAGTGTATGTATGCTGCCTTTTTTTTTTCTATACTAGATGTATATTCAGAACATTGTAGAGTCATGAACCTGTTAATGGATGTGAATTATGATACTAAAAAAAACAAAAAAAAA]

[+] EMBL U95135               [GAGCAACACACCAAGAAGGCCAGAGAGATTCAGAGAACTACACCGAGAAGGCGAGATTGTTTGCGTGGTTGGTAATTTGGCCGGCCTTGATCGATCGAGCGGAGAAGAGAAGAAAAAGATGGCGGGGAGCGGTGTCCTGGAGGTGCATCTCGTCGACGCCAAGGGCCTCACCGGCAACGACTTCCTAGGTGAGATAGGCAACATACACCCGTACGTGGTGGTGCAGTACCGGAGCCAGGAGCGCAAGAGCAGCGTCGCCAGAGATCAAGGGAAGAACCCGAGCTGGAACGAGGTGTTCAAGTTCCAGATCAACTCCACGGCGGCGACCGGGCAGCACAAGCTCTTTCTGCGGCTCATGGACCACGACACCTTCTCACGGGACGACTTCCTCGGCGAAGCAACGATCAACGTGACTGACCTGATCAGCTTAGGCATGGAGCACGGCACATGGGAGATGAGCGAATCCAAGCACCGGGTCGTCCTCGCGGACAAAACATACCACGGCG AGATCAGAGTCAGCCTCACGTTCACGGCTTCTGCAAAGGCTCAAGACCACGCAGAACAGGTTGGAGGATGGGCGCACAGCTTTCGTCAGTAGAAAGATTGTGAACTTCAAGTCTATAATCAGTTGGGGCCTGTGGGAGGTTTAGATAAGTATACTATAGTACTAGCAAGGTAGGATTTTGTGAGTAACAACGGCATCTAATGCCCAAGATTGATGTGGTTCGAAGTGTATGTATGCTGCCTTTTTTTTTTCTATACTAGATGTATATTCAGAACATTGTAGAGTCATGAACCTGTTAATGGATGTGAATTATGATACTAAAAAAAA          ]
[+] EMBL U95136               [                                                                                                           AGAAGAAAAAGATGGCGGGGAGCGGTGTCCTGGAGGTGCATCTCGTCGACGCCAAGGGCCTCACCGGCAACGACTTCC         TAGGCAAGATAGACCCGTACGTGGTGGTGCAGTACCGGAGCCAGGAGCGCAAGAGCAGCGTCGCCAGAGATCAAGGGAAGAACCCGAGCTGGAACGAGGTGTTCAAGTTCCAGATCAACTCCACGGCGGCGACCGGGCAGCACAAGCTCTTTCTGCGGCTCATGGACCACGACACCTTCTCACGGGACGACTTCCTCGGCGAAGCAACGATCAACGTGACTGACCTGATCAGCTTAGGCATGGAGCACGGCACATGGGAGATGAGCGAATCCAAGCACCGGGTCGTCCTCGCGGACAAAACATACCACGGCG AGATCAGAGTCAGCCTCACGTTCACGGCTTCTGCAAAGGCTCAAGACCACGCAGAACAGGTTGGAGGATGGGCGCACAGCTTTCGTCAGTAGAAAGATTGTGAACTTCAAGTCTATAATCAGTTGGGGCCTGTGGGAGGTTTAGATAAGTATACTATAGTACTAGCAAGGTAGGATTTTGTGAGTAACAACGGCATCTAATGCCCAAGATTGATGTGGTTCGAAGTGTATGTATGCTGCCTTTTTTTTTTCTATACTAGATGTATATTCAGAACATTGTAGAGTCATGAACCTGTTAATGGATGTGAATTATGATACTACTTCAACCAAAAAAAAA]
[+] EMBL C74955               [                                                                                                                                                                                                                                                     AGAGCAGCGTCGCCAGAGATCAAGGGAAGAACCCGAGCTGGAACGAGGTGTTCAAGTTCCAGATCAACTCCACGGCGGCGACCGGGCAGCACAAGCTCTTTCTGCGGCTCATGGACCACGACACCTTCTCACGGGACGACTTCCTCGGCGAA NAACGATCAACGTGACTGACCTGATCAGCTTAGGCATGGAGCACGGCACATGGGAGATGAGCGAATCCAAGCACCGGGTCGTCCTCGCGGACAAAACATACCACGGCGAAGATCAGAGTCAGCCTCACGTTCACGGCTTCTGCAAAGGCTCca                                                                                                                                                                                                                                                                                                    ]




>consensus_8677#0
GAGCAACACACCAAGAAGGCCAGAGAGATTCAGAGAACTACACCGAGAAGGCGAGATTGT
TTGCGTGGTTGGTAATTTGGCCGGCCTTGATCGATCGAGCGGAGAAGAGAAGAAAAAGAT
GGCGGGGAGCGGTGTCCTGGAGGTGCATCTCGTCGACGCCAAGGGCCTCACCGGCAACGA
CTTCCTAGGTGAGATAGGCAACATACACCCGTACGTGGTGGTGCAGTACCGGAGCCAGGA
GCGCAAGAGCAGCGTCGCCAGAGATCAAGGGAAGAACCCGAGCTGGAACGAGGTGTTCAA
GTTCCAGATCAACTCCACGGCGGCGACCGGGCAGCACAAGCTCTTTCTGCGGCTCATGGA
CCACGACACCTTCTCACGGGACGACTTCCTCGGCGAAGCAACGATCAACGTGACTGACCT
GATCAGCTTAGGCATGGAGCACGGCACATGGGAGATGAGCGAATCCAAGCACCGGGTCGT
CCTCGCGGACAAAACATACCACGGCGAGATCAGAGTCAGCCTCACGTTCACGGCTTCTGC
AAAGGCTCAAGACCACGCAGAACAGGTTGGAGGATGGGCGCACAGCTTTCGTCAGTAGAA
AGATTGTGAACTTCAAGTCTATAATCAGTTGGGGCCTGTGGGAGGTTTAGATAAGTATAC
TATAGTACTAGCAAGGTAGGATTTTGTGAGTAACAACGGCATCTAATGCCCAAGATTGAT
GTGGTTCGAAGTGTATGTATGCTGCCTTTTTTTTTTCTATACTAGATGTATATTCAGAAC
ATTGTAGAGTCATGAACCTGTTAATGGATGTGAATTATGATACTAAAAAAAACAAAAAAA
AA

consensusID : consensus_8677#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 520
fasta sequence

                              [CGTCCTCGCGGACAAAACATACCACGGGNAGATCAGAGTCAGCCTCACGTTCACGGCTTCTGCAAAGGTAAACAAATCACCANACGCACGANTGAATTATTGATTAATCATGTACCGCCCCGGTGGCCTTCCATGGGTCTCTCCTGATTGGCTGGGATCTGAATGTGATTCGATGTTGATGTCCAATGACAGGCTCAAGACCACGCAGAACAGGTTGGAGGATGGGCGCACAGCTTTCGTCAGTAGAAAGATTGTGAACTTCAAGTCTATAATCAGTTGGGGCCTGTGGGAGGTTTAGATAAGTATACTATAGTACTAGCAAGGTAGGATTTTGTGAGTAACAACGGCATCTAATGCCCAAGATTGATGTGGTTCGAAGTGTATGTATGCTGCCTTTTTTTTTTCTATACTAGATGTATATTCAGAACATTGTAGAGTCATGAACCTGTTAATGGATGTGAATTATGATACTACTTCAACCTCTAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC]

[-] EMBL AW155579             [CGTCCTCGCGGACAAAACATACCACGGGNAGATCAGAGTCAGCCTCACGTTCACGGCTTCTGCAAAGGTAAACAAATCACCANACGCACGANTGAATTATTGATTAATCATGTACCGCCCCGGTGGCCTTCCATGGGTCTCTCCTGATTGGCTGGGATCTGAATGTGATTCGATGTTGATGTCCAATGACAGGCTCAAGACCACGCAGAACAGGTTGGAGGATGGGCGCACAGCTTTCGTCAGTAGAAAGATTGTGAACTTCAAGTCTATAATCAGTTGGGGCCTGTGGGAGGTTTAGATAAGTATACTATAGTACTAGCAAGGTAGGATTTTGTGAGTAACAACGGCATCTAATGCCCAAGATTGATGTGGTTCGAAGTGTATGTATGCTGCCTTTTTTTTTTCTATACTAGATGTATATTCAGAACATTGTAGAGTCATGAACCTGTTAATGGATGTGAATTATGATACTACTTCAACCTCTAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC]




>consensus_8677#1
CGTCCTCGCGGACAAAACATACCACGGGNAGATCAGAGTCAGCCTCACGTTCACGGCTTC
TGCAAAGGTAAACAAATCACCANACGCACGANTGAATTATTGATTAATCATGTACCGCCC
CGGTGGCCTTCCATGGGTCTCTCCTGATTGGCTGGGATCTGAATGTGATTCGATGTTGAT
GTCCAATGACAGGCTCAAGACCACGCAGAACAGGTTGGAGGATGGGCGCACAGCTTTCGT
CAGTAGAAAGATTGTGAACTTCAAGTCTATAATCAGTTGGGGCCTGTGGGAGGTTTAGAT
AAGTATACTATAGTACTAGCAAGGTAGGATTTTGTGAGTAACAACGGCATCTAATGCCCA
AGATTGATGTGGTTCGAAGTGTATGTATGCTGCCTTTTTTTTTTCTATACTAGATGTATA
TTCAGAACATTGTAGAGTCATGAACCTGTTAATGGATGTGAATTATGATACTACTTCAAC
CTCTAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC

consensusID : consensus_8677#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 261
fasta sequence

                              [GGAACGAGGTGTTCAAGTTCCAGATCAACTCCACGGCGGCGACCGGGCAGCACAAGCTCTTTCTGCGGCTCATGGACCACGACACCTTCTCACGGGACGACTTCCTCGGCGAAGCAACGTGAGTGCCATTATATGCTCTCACCAAAACAAAAAGCCAACAACCATGGCAGCTAGCTTAGTCATAGCAAACGCTAAACACTAAAGTAATTTTCCAGTTCTTAAAGGAGATATTAAGGAGGCACCAAATTTACACTAAAACTT]

[+] EMBL BE230432             [GGAACGAGGTGTTCAAGTTCCAGATCAACTCCACGGCGGCGACCGGGCAGCACAAGCTCTTTCTGCGGCTCATGGACCACGACACCTTCTCACGGGACGACTTCCTCGGCGAAGCAACGTGAGTGCCATTATATGCTCTCACCAAAACAAAAAGCCAACAACCATGGCAGCTAGCTTAGTCATAGCAAACGCTAAACACTAAAGTAATTTTCCAGTTCTTAAAGGAGATATTAAGGAGGCACCAAATTTACACTAAAACTT]




>consensus_8677#2
GGAACGAGGTGTTCAAGTTCCAGATCAACTCCACGGCGGCGACCGGGCAGCACAAGCTCT
TTCTGCGGCTCATGGACCACGACACCTTCTCACGGGACGACTTCCTCGGCGAAGCAACGT
GAGTGCCATTATATGCTCTCACCAAAACAAAAAGCCAACAACCATGGCAGCTAGCTTAGT
CATAGCAAACGCTAAACACTAAAGTAATTTTCCAGTTCTTAAAGGAGATATTAAGGAGGC
ACCAAATTTACACTAAAACTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8677#0      GAGCAACACACCAAGAAGGCCAGAGAGATTCAGAGAACTACACCGAGAAGGCGAGATTGT 60
consensus_8677#1      ------------------------------------------------------------
consensus_8677#2      ------------------------------------------------------------
                                                                                  

consensus_8677#0      TTGCGTGGTTGGTAATTTGGCCGGCCTTGATCGATCGAGCGGAGAAGAGAAGAAAAAGAT 120
consensus_8677#1      ------------------------------------------------------------
consensus_8677#2      ------------------------------------------------------------
                                                                                  

consensus_8677#0      GGCGGGGAGCGGTGTCCTGGAGGTGCATCTCGTCGACGCCAAGGGCCTCACCGGCAACGA 180
consensus_8677#1      ------------------------------------------------------------
consensus_8677#2      ------------------------------------------------------------
                                                                                  

consensus_8677#0      CTTCCTAGGTGAGATAGGCAACATACACCCGTACGTGGTGGTGCAGTACCGGAGCCAGGA 240
consensus_8677#1      ------------------------------------------------------------
consensus_8677#2      ------------------------------------------------------------
                                                                                  

consensus_8677#0      GCGCAAGAGCAGCGTCGCCAGAGATCAAGGGAAGAACCCGAGCTGGAACGAGGTGTTCAA 300
consensus_8677#1      ------------------------------------------------------------
consensus_8677#2      ------------------------------------------------------------
                                                                                  

consensus_8677#0      GTTCCAGATCAACTCCACGGCGGCGACCGGGCAGCACAAGCTCTTTCTGCGGCTCATGGA 360
consensus_8677#1      -------------------------------------------------CGTCCTCGCGG 11
consensus_8677#2      ------------------------------------------------------------
                                                                                  

consensus_8677#0      CCACGACACCTTCTCACGGGACGACTTCCTCGGCGAAGCAACGATCAACGTGACTGACCT 420
consensus_8677#1      ACAAAACA---TACCACGGGNAGA--TCAGAGTCAGCCTCACGTTCACGGCTTCTGCAAA 66
consensus_8677#2      --------------------------------GGAACGAGGTGTTCA-AGTTCCAGATCA 27
                                                                * ***  *   * *    

consensus_8677#0      GATCAGCTTAGGCATGGAGCACGGCACATGGGAGATGAGCGAATCCAAGCACCG----GG 476
consensus_8677#1      GGTAAACA-AATCACCANACGCA-CGANTGAATTATTGATTAATC-ATGTACCGCCCCGG 123
consensus_8677#2      ACTCCACGGCGGCGACCGG-GCAGCACAAGCTCTTTCTGCGGCTC-ATGGACCAC---GA 82
                        *   *     *        *  *    *     *       ** * * ***     * 

consensus_8677#0      TCGTCCTC-GCGGACAAAACATACCACGGCGAG--ATCAGAGTCAGCCTC-ACGTTCACG 532
consensus_8677#1      TGGCCTTCCATGGGTCTCTCCTGATTGGCTGGG--ATCTGAATGTGATTCGATGTTGATG 181
consensus_8677#2      CACCTTCTCACGGGACGA-CTTCCTCGGCGAAGCAACGTGAGTGCCATTATATGCTCTCA 141
                                 **      * *     *    *  *   ** *     *  * * *    

consensus_8677#0      GCTTCTGCAAAGGCTCAAGACCACGCAGAACAGGTTGGAGGATGGGCGCACAGCTTTCGT 592
consensus_8677#1      TCCAATG-ACAGGCTCAAGACCACGCAGAACAGGTTGGAGGATGGGCGCACAGCTTTCGT 240
consensus_8677#2      CCAAAACAAAAAGCCAACAACCATGGCAGCTAGCTTAGT---------CATAGCAAACGC 192
                       *      * * **  *  **** *      ** ** *          ** ***   ** 

consensus_8677#0      CAGTAGAAAGATTGTGAACTTCAAGTCTATAATCAGTTGGGGCCTGTGGGAGGTTTAGAT 652
consensus_8677#1      CAGTAGAAAGATTGTGAACTTCAAGTCTATAATCAGTTGGGGCCTGTGGGAGGTTTAGAT 300
consensus_8677#2      TA--AACACTAAAGTAATTTTCCAGTTCTTAA--AG--GAGATATTAAGGAGGCAC---C 243
                       *  *  *  *  ** *  *** ***   ***  **  * *   *   *****       

consensus_8677#0      AAGTATACTATAGTACTAGCAAGGTAGGATTTTGTGAGTAACAACGGCATCTAATGCCCA 712
consensus_8677#1      AAGTATACTATAGTACTAGCAAGGTAGGATTTTGTGAGTAACAACGGCATCTAATGCCCA 360
consensus_8677#2      AAATTTACACTAAAACTT------------------------------------------ 261
                      ** * ***  **  ***                                           

consensus_8677#0      AGATTGATGTGGTTCGAAGTGTATGTATGCTGCCTTTTTTTTTTCTATACTAGATGTATA 772
consensus_8677#1      AGATTGATGTGGTTCGAAGTGTATGTATGCTGCCTTTTTTTTTTCTATACTAGATGTATA 420
consensus_8677#2      ------------------------------------------------------------
                                                                                  

consensus_8677#0      TTCAGAACATTGTAGAGTCATGAACCTGTTAATGGATGTGAATTATGATACTA------- 825
consensus_8677#1      TTCAGAACATTGTAGAGTCATGAACCTGTTAATGGATGTGAATTATGATACTACTTCAAC 480
consensus_8677#2      ------------------------------------------------------------
                                                                                  

consensus_8677#0      ----AAAAAAACAAAAAAAAA------------------- 842
consensus_8677#1      CTCTAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC 520
consensus_8677#2      ----------------------------------------