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Oryza sativa
cluster # 8690 cluster # 8690       Sequences # 5       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8690#0 length = 1072 sequences # 4  
 consensus_8690#1 length = 394 sequences # 1  
consensusID : consensus_8690#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1072
fasta sequence 
                              [GCTCGTCTCGCCTTCGCCTTACCGCAAATACTTCGGGGCTTCCGGCGCACGCAAAAAAACCGCAGGTTTTCTTAGCATTCCACAGCCGAAAAAGCCCCCAAACAAAACAGCCAAGCTTGCTCGGTCGCTGCGCGCTATCTCGCCTCGCGACGACGCCATGGCCACTGCCTCCTCACTCTTCCTCGCCTCCCCCGTCGCCACCGCGCCGACAGCCCGCGCCCGGTCCACACCCTCGGCTTCCCCTGCCCGGCCGTCCCTGCGCCTCCGGCGGCCGTCGACGTTGGCCGCGGCCGCGGTCCAGGCCGAGCACCAGCCCGCGGTCGCCGCGGCGCCGAAGCCGCCGGCACTCCCGTTCCGCGTCGGCCACGGCTTCGACCTCCACCGCCTCGAGCCGGGCCTCCCCCTCATCATCGGGGGCATCGACATCCCCCACGACCGCGGCTGCGACGCCCACTCCGACGGGGACGTGCTGCTGCACTGCGTGGTGGACGCGATTCTCGGCGCGCTCGGGCTGCCTGACATCGGGCAGATCTTCCCGGACTCCGACCCCCGTTGGAAGGGCGCCGATTCGTCGGTGTTCATGAGGGAAGCTGTGAAACTGATGCATGAAGCTGGCTATGAGCTGGGGAACCTAGACGCTACGTTGATCTTGCAGAAACCCAAAATTAGCCCATTCAAGGAGACAATACGGTCTAACTTGTGTGACTTGCTGGGGGCGGATCCATCCGTCGTCAATCTGAAGGCCAAGACGCACGAGAAAGTCGACAGTCTTGGTGAAAACAGGAGCATAGCTGCTCACACTGTAGTTCTTCTGATGCGGAAATAGGAAAATGGAAGTGTACTACATATTACAGGAATTGAATTGTAACATAGTGAACAAATTGTCCTTATGTAAGTGGTTTATCACTGAAATTTTAGGGC-AAAAACA--ATAAAAC-CGAGTGCAATGTAAAATTTTATGTATCCAGATTGTGTCTTGACTGTTTCAC-AATGAACATTANAATTTTATGGCAGCATGCTGAGGTTGGAGCGTCCGCTGCTAACATCAGAATGCCTCGTGCCGATTAAGCCTGGG]

[+] EMBL AK060238             [GCTCGTCTCGCCTTCGCCTTACCGCAAATACTTCGGGGCTTCCGGCGCACGCAAAAAAACCGCAGGTTTTCTTAGCATTCCACAGCCGAAAAAGCCCCCAAACAAAACAGCCAAGCTTGCTCGGTCGCTGCGCGCTATCTCGCCTCGCGACGACGCCATGGCCACTGCCTCCTCACTCTTCCTCGCCTCCCCCGTCGCCACCGCGCCGACAGCCCGCGCCCGGTCCACACCCTCGGCTTCCCCTGCCCGGCCGTCCCTGCGCCTCCGGCGGCCGTCGACGTTGGCCGCGGCCGCGGTCCAGGCCGAGCACCAGCCCGCGGTCGCCGCGGCGCCGAAGCCGCCGGCACTCCCGTTCCGCGTCGGCCACGGCTTCGACCTCCACCGCCTCGAGCCGGGCCTCCCCCTCATCATCGGGGGCATCGACATCCCCCACGACCGCGGCTGCGACGCCCACTCCGACGGGGACGTGCTGCTGCACTGCGTGGTGGACGCGATTCTCGGCGCGCTCGGGCTGCCTGACATCGGGCAGATCTTCCCGGACTCCGACCCCCGTTGGAAGGGCGCCGATTCGTCGGTGTTCATGAGGGAAGCTGTGAAACTGATGCATGAAGCTGGCTATGAGCTGGGGAACCTAGACGCTACGTTGATCTTGCAGAAACCCAAAATTAGCCCATTCAAGGAGACAATACGGTCTAACTTGTGTGACTTGCTGGGGGCGGATCCATCCGTCGTCAATCTGAAGGCCAAGACGCACGAGAAAGTCGACAGTCTTGGTGAAAACAGGAGCATAGCTGCTCACACTGTAGTTCTTCTGATGCGGAAATAGGAAAATGGAAGTGTACTACATATTACAGGAATTGAATTGTAACATAGTGAACAAATTGTCCTTATGTAAGTGGTTTATCACTGAAATTTTAGGGC AAAAACA  ATAAAAC CGAGTGCAATGTAAAATT                                                                                                                        ]
[-] EMBL AW070161             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GGCAGGTCTTCCCGGACTCCGACCCCCGTTGGAAGGGCGCCGATTCGTCGGTGTTCATGAGGGAAGCTGTGAAACTGATGCATGAAGCTGGCTATGAGCTGGGGAACCTAGACGCTACATTGACCTTGCAGAAACCCAAAATTAGCCCATTCAAGGAGACAATACGGTCTAACTTGTGTGACTTGCTGGGGGCGGATCCATCCGTCGTCAATCTGAAGGCCAAGACGCACGAGAAAGTCGACGGTCTTGGTGAAAACAGGAGCATAGCTGATCACACTGTAGTTCTTCTGATGCGGAAATAGGAAAAT                                                                                                                                                                                                                                                     ]
[+] EMBL AA751541             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ggcangagCTTGCTGGGGGCGGATCCATCCGTCGTCAATCTGAAGGCCAAGACGCACGANAAAGTCGACAGTCTTGGTGAAAACAGGAGCATAGCTGCTCACACTGTAGTTCTTCTGATGCGGAAATAGGAAAATGGAAGTGTACTACATATTACAGGAATTGAATTGTAACATAGTGAACAAATTGTCCTTATGTAAGTGGTTTATCACTGAAATTTTAGGGC AAAAACA  ATAAAAC CGAGTGCAATGTAAAATTTTATGTATCCAGATTGTGTCTTGACTGTTTCAC AATGAACATTANAAT                                                                       ]
[-] EMBL BU673895             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GGGCAAAAAACAATATAAAACACGAGTGCAATGTAAAATTTTATGTATCCAGATTGTGTCTTGACTGTTTCACAAATGAACATTAGAATTTTATGGCAGCATGCTGAGGTTGGAGCGTCCGCTGCTAACATCAGAATGCCTCGTGCCGATTAAGCCTGGG]




>consensus_8690#0
GCTCGTCTCGCCTTCGCCTTACCGCAAATACTTCGGGGCTTCCGGCGCACGCAAAAAAAC
CGCAGGTTTTCTTAGCATTCCACAGCCGAAAAAGCCCCCAAACAAAACAGCCAAGCTTGC
TCGGTCGCTGCGCGCTATCTCGCCTCGCGACGACGCCATGGCCACTGCCTCCTCACTCTT
CCTCGCCTCCCCCGTCGCCACCGCGCCGACAGCCCGCGCCCGGTCCACACCCTCGGCTTC
CCCTGCCCGGCCGTCCCTGCGCCTCCGGCGGCCGTCGACGTTGGCCGCGGCCGCGGTCCA
GGCCGAGCACCAGCCCGCGGTCGCCGCGGCGCCGAAGCCGCCGGCACTCCCGTTCCGCGT
CGGCCACGGCTTCGACCTCCACCGCCTCGAGCCGGGCCTCCCCCTCATCATCGGGGGCAT
CGACATCCCCCACGACCGCGGCTGCGACGCCCACTCCGACGGGGACGTGCTGCTGCACTG
CGTGGTGGACGCGATTCTCGGCGCGCTCGGGCTGCCTGACATCGGGCAGATCTTCCCGGA
CTCCGACCCCCGTTGGAAGGGCGCCGATTCGTCGGTGTTCATGAGGGAAGCTGTGAAACT
GATGCATGAAGCTGGCTATGAGCTGGGGAACCTAGACGCTACGTTGATCTTGCAGAAACC
CAAAATTAGCCCATTCAAGGAGACAATACGGTCTAACTTGTGTGACTTGCTGGGGGCGGA
TCCATCCGTCGTCAATCTGAAGGCCAAGACGCACGAGAAAGTCGACAGTCTTGGTGAAAA
CAGGAGCATAGCTGCTCACACTGTAGTTCTTCTGATGCGGAAATAGGAAAATGGAAGTGT
ACTACATATTACAGGAATTGAATTGTAACATAGTGAACAAATTGTCCTTATGTAAGTGGT
TTATCACTGAAATTTTAGGGCAAAAACAATAAAACCGAGTGCAATGTAAAATTTTATGTA
TCCAGATTGTGTCTTGACTGTTTCACAATGAACATTANAATTTTATGGCAGCATGCTGAG
GTTGGAGCGTCCGCTGCTAACATCAGAATGCCTCGTGCCGATTAAGCCTGGG

consensusID : consensus_8690#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 394
fasta sequence 
                              [CGAGGGAACCYAGACGCTACATGTGATCTYGCAGAAACCCAAAATWDGCCACATTCAAGGGAGACAATACGGATCTAACTTGCTGTGACTTGCTGGGGGGCGSATCCATCCGTCAGTCAATCTGTAAGGCCAAAGCACGCACGAGAAAGTCGACAGTCTTGGTGAAAACAGGAGCATAGCTGCTCACACTGTAGTTCTTACTGATGCGGAAATAAGGAAAATGGAAGWGTACTACATATTACAGGAATTGAATTGTAACATAGTGAACAAAWTGTCCTWATGTAAGTRGTTTATCACTGTAWATWTYAGGGCAAAAACAATAAAACCGAGTRCAATGTAAAATWTWATGTGTTCAGATTGTGTCTTGACTGTTTCACAATGAACAWTAGATWTT]

[+] EMBL BE229374             [CGAGGGAACCYAGACGCTACATGTGATCTYGCAGAAACCCAAAATWDGCCACATTCAAGGGAGACAATACGGATCTAACTTGCTGTGACTTGCTGGGGGGCGSATCCATCCGTCAGTCAATCTGTAAGGCCAAAGCACGCACGAGAAAGTCGACAGTCTTGGTGAAAACAGGAGCATAGCTGCTCACACTGTAGTTCTTACTGATGCGGAAATAAGGAAAATGGAAGWGTACTACATATTACAGGAATTGAATTGTAACATAGTGAACAAAWTGTCCTWATGTAAGTRGTTTATCACTGTAWATWTYAGGGCAAAAACAATAAAACCGAGTRCAATGTAAAATWTWATGTGTTCAGATTGTGTCTTGACTGTTTCACAATGAACAWTAGATWTT]




>consensus_8690#1
CGAGGGAACCYAGACGCTACATGTGATCTYGCAGAAACCCAAAATWDGCCACATTCAAGG
GAGACAATACGGATCTAACTTGCTGTGACTTGCTGGGGGGCGSATCCATCCGTCAGTCAA
TCTGTAAGGCCAAAGCACGCACGAGAAAGTCGACAGTCTTGGTGAAAACAGGAGCATAGC
TGCTCACACTGTAGTTCTTACTGATGCGGAAATAAGGAAAATGGAAGWGTACTACATATT
ACAGGAATTGAATTGTAACATAGTGAACAAAWTGTCCTWATGTAAGTRGTTTATCACTGT
AWATWTYAGGGCAAAAACAATAAAACCGAGTRCAATGTAAAATWTWATGTGTTCAGATTG
TGTCTTGACTGTTTCACAATGAACAWTAGATWTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8690#0      GCTCGTCTCGCCTTCGCCTTACCGCAAATACTTCGGGGCTTCCGGCGCACGCAAAAAAAC 60
consensus_8690#1      ------------------------------------------------------------
                                                                                  

consensus_8690#0      CGCAGGTTTTCTTAGCATTCCACAGCCGAAAAAGCCCCCAAACAAAACAGCCAAGCTTGC 120
consensus_8690#1      ------------------------------------------------------------
                                                                                  

consensus_8690#0      TCGGTCGCTGCGCGCTATCTCGCCTCGCGACGACGCCATGGCCACTGCCTCCTCACTCTT 180
consensus_8690#1      ------------------------------------------------------------
                                                                                  

consensus_8690#0      CCTCGCCTCCCCCGTCGCCACCGCGCCGACAGCCCGCGCCCGGTCCACACCCTCGGCTTC 240
consensus_8690#1      ------------------------------------------------------------
                                                                                  

consensus_8690#0      CCCTGCCCGGCCGTCCCTGCGCCTCCGGCGGCCGTCGACGTTGGCCGCGGCCGCGGTCCA 300
consensus_8690#1      ------------------------------------------------------------
                                                                                  

consensus_8690#0      GGCCGAGCACCAGCCCGCGGTCGCCGCGGCGCCGAAGCCGCCGGCACTCCCGTTCCGCGT 360
consensus_8690#1      ------------------------------------------------------------
                                                                                  

consensus_8690#0      CGGCCACGGCTTCGACCTCCACCGCCTCGAGCCGGGCCTCCCCCTCATCATCGGGGGCAT 420
consensus_8690#1      ------------------------------------------------------------
                                                                                  

consensus_8690#0      CGACATCCCCCACGACCGCGGCTGCGACGCCCACTCCGACGGGGACGTGCTGCTGCACTG 480
consensus_8690#1      ------------------------------------------------------------
                                                                                  

consensus_8690#0      CGTGGTGGACGCGATTCTCGGCGCGCTCGGGCTGCCTGACATCGGGCAGATCTTCCCGGA 540
consensus_8690#1      ------------------------------------------------------------
                                                                                  

consensus_8690#0      CTCCGACCCCCGTTGGAAGGGCGCCGATTCGTCGGTGTTCATGAGGGAAGCTGTGAAACT 600
consensus_8690#1      ------------------------------------------------------------
                                                                                  

consensus_8690#0      GATGCATGAAGCTGGCTATGAGCTGGGGAACCTAGACGCTACGT-TGATCTTGCAGAAAC 659
consensus_8690#1      ----------------------CGAGGGAACCYAGACGCTACATGTGATCTYGCAGAAAC 38
                                            *  ******* ********* * ****** ********

consensus_8690#0      CCAAAATTAGCC-CATTCAAGG-AGACAATACGG-TCTAACTTG-TGTGACTTGCTGGGG 715
consensus_8690#1      CCAAAATWDGCCACATTCAAGGGAGACAATACGGATCTAACTTGCTGTGACTTGCTGGGG 98
                      *******  *** ********* *********** ********* ***************

consensus_8690#0      G-CGGATCCATCCGTC-GTCAATCTG-AAGGCCAAG--ACGCACGAGAAAGTCGACAGTC 770
consensus_8690#1      GGCGSATCCATCCGTCAGTCAATCTGTAAGGCCAAAGCACGCACGAGAAAGTCGACAGTC 158
                      * ** *********** ********* ********   **********************

consensus_8690#0      TTGGTGAAAACAGGAGCATAGCTGCTCACACTGTAGTTCTT-CTGATGCGGAAATA-GGA 828
consensus_8690#1      TTGGTGAAAACAGGAGCATAGCTGCTCACACTGTAGTTCTTACTGATGCGGAAATAAGGA 218
                      ***************************************** ************** ***

consensus_8690#0      AAATGGAAGTGTACTACATATTACAGGAATTGAATTGTAACATAGTGAACAAATTGTCCT 888
consensus_8690#1      AAATGGAAGWGTACTACATATTACAGGAATTGAATTGTAACATAGTGAACAAAWTGTCCT 278
                      ********* ******************************************* ******

consensus_8690#0      TATGTAAGTGGTTTATCACTG-AAATTTTAGGGCAAAAACAATAAAACCGAGTGCAATGT 947
consensus_8690#1      WATGTAAGTRGTTTATCACTGTAWATWTYAGGGCAAAAACAATAAAACCGAGTRCAATGT 338
                       ******** *********** * ** * ************************ ******

consensus_8690#0      AAAATTTTATGTATCCAGATTGTGTCTTGACTGTTTCACAATGAACATTANAATTTTATG 1007
consensus_8690#1      AAAATWTWATGTGTTCAGATTGTGTCTTGACTGTTTCACAATGAACAWTAGATWTT---- 394
                      ***** * **** * ******************************** ** *  **    

consensus_8690#0      GCAGCATGCTGAGGTTGGAGCGTCCGCTGCTAACATCAGAATGCCTCGTGCCGATTAAGC 1067
consensus_8690#1      ------------------------------------------------------------
                                                                                  

consensus_8690#0      CTGGG 1072
consensus_8690#1      -----


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)