cluster # 8696

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Oryza sativa
cluster # 8696 cluster # 8696 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8696#0 length = 442 sequences # 3

consensus_8696#1 length = 324 sequences # 1
consensus_8696#2 length = 200 sequences # 1

consensusID : consensus_8696#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 442
fasta sequence

                              [GCCGTCGGGGCAGCGGCGGCTGGAGTTCAGCTTCCAGGGGTCGTCGGCGTCGGCGGTGGGTGGGGGAGGAGGGGAGTTCGAGAGGGTTAGGATGCGGAGCCGCTGGGGAACCCGATGGCGGCGAGGGAAGGGNAGGAGGAGTCGCGGTGGCTGCAGGCGTCGCGGGTCGGCTCGCCGGAGTCCGGCACGCCGTCGCCGGAGTTCTGGGGGCAGCAGCAGCAGCAGCAGCTCCAGCGGCTATACCCGGCGTCGGCGGGGAGCTCGCCGTCGAGGGCGCAGGCGATCGCCGGGTACCGACGCGAGATGCTCGACCTCGTCCGCGGCCTCCCCGAGTCCTGCTACGAGCTCTCCCTCCGCGAC-ATCGTCGA-GTCCCCTCCTCCTCCGCCGCCGCATCCTCTCCCTCCTCCTCCCCCCACCCCACCACCTCCCACCGCCGAAGCCA]

[+] EMBL AU097265             [GCCGTCGGGGCAGCGGCGGCTGGAGTTCAGCTTCCAGGGGTCGTCGGCGTCGGCGGTGGGTGGGGGAGGAGGGGAGTTCGAGAGGGTTAGGATGCGGACCCGCTGGGGAACCCGATGGCGGCGAGGGAAGGGGAGGAGGAGTCGCGGTGGCTGCAGGCGTCGCGGGTCGGCTCGCCGGAGTCCGGCACGCCGTCGCCGGAGTTCTGGGGGCAGCAGCAGCAGCAGCAGCTCCAGCGGCTATACCCGGCGTCGGCGGGGAGCTCGCCGTCGAGGGCGCAGGCGATCGCCGGGTACCGACGCGAGATGCTCGACCTCGTCCGCGGCCTCCCCGAGTCCTGCTACGAGCTCTCCCTCCGCGAC ATCGTCGA GTCCCCTCCTCCTCCGCCGCCGCATCCTCTCCCTCCTCCTCCCCCCACCCCACCACCTCCCACCGCCGAAGCCA]
[+] EMBL OSS3307A             [GCCGTCGGGGCAGCGGCGGCTGGAGTTCAGCTTCCAGGGGTCGTNGGCGTCGGCGGTGGGTGGGGGAGGAGGGGAGTTCGAGAGGGTTAGGATGCGGAGCCGCTGGGGAACCCGATGGCGGCGAGGGAAGNGNAGGAGGAGTCGCGGTGGCTGCAGGCGTCGCGGGTCGGCTCGCCGGAGTCCGGCACGCCGTCGCCGGAGTTCTGGGGGCAGCAGCAGCAGCAGCAGCTCCAGCGGCTATACCCGNCGTCGGCGNGGAGCTCGCCGTCGAGGGCGCAGGCGATCGCCGGGTACCGACGCGAGATGCTCNAGCTCGTCCNCGGCCTCCCCGAGTCCTNCTACGAACTCTCCCTCCGNGACAATCGTCGANGTCCCCTt                                                                  ]
[+] EMBL OSS3029A             [GCCGTCGGGGCAGCGGCGGCTGGAGTTCAGCTTCCAGGGGTCGTCGGCGTCGGCGGTGGGTGGGGGAGGAGGGGAGTTCGANAGGGTTAGGATGCGGANCCGCTGGGGAACCCGATGGCGGCGAGGGAAGGGNAGGAGGAGTCGCGGTGGCTGCAGGCNTCGCGGGTCGGCTCGCCGGAGTCCGGCACGNCGTCGCCGGAGTTCTGGGGGCAGCAGCAGCAGCAGCAGCTCCAGCGGCTATACCCGGCGTCGGCGGGGAGCTCGCCGT                                                                                                                                                                                ]




>consensus_8696#0
GCCGTCGGGGCAGCGGCGGCTGGAGTTCAGCTTCCAGGGGTCGTCGGCGTCGGCGGTGGG
TGGGGGAGGAGGGGAGTTCGAGAGGGTTAGGATGCGGAGCCGCTGGGGAACCCGATGGCG
GCGAGGGAAGGGNAGGAGGAGTCGCGGTGGCTGCAGGCGTCGCGGGTCGGCTCGCCGGAG
TCCGGCACGCCGTCGCCGGAGTTCTGGGGGCAGCAGCAGCAGCAGCAGCTCCAGCGGCTA
TACCCGGCGTCGGCGGGGAGCTCGCCGTCGAGGGCGCAGGCGATCGCCGGGTACCGACGC
GAGATGCTCGACCTCGTCCGCGGCCTCCCCGAGTCCTGCTACGAGCTCTCCCTCCGCGAC
ATCGTCGAGTCCCCTCCTCCTCCGCCGCCGCATCCTCTCCCTCCTCCTCCCCCCACCCCA
CCACCTCCCACCGCCGAAGCCA

consensusID : consensus_8696#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 324
fasta sequence

                              [TCCAACCTCTCTCTCTCTCTCTCGGCGTCGGGATGATGCCGATGCCGCCGTCGGGGCAGCGGCGGCTGGAGTTCAGCTTCCAGGGGTCGTCGGCGTCGGCGGTGGGTGGGGGAGGAGGGGAGTTCGAGAGGGTTAGGATGCGGANCCGCTGGGGAACCCGATGGCGGCGAGGGAANNGGAGGAGGAGTCGCGGTNGCTGCAGGCGTCGCGGGTCGGCTCGCCGGAGTCCCGCANGNCGTCGCCGGAGTTCTTNGGGGCAACANCAACAGCAACAACTCCANCGCTATACCCGCGTCGCGGGAGTTGCGTCGAGGCCAGCATCCC]

[+] EMBL OSS13958A            [TCCAACCTCTCTCTCTCTCTCTCGGCGTCGGGATGATGCCGATGCCGCCGTCGGGGCAGCGGCGGCTGGAGTTCAGCTTCCAGGGGTCGTCGGCGTCGGCGGTGGGTGGGGGAGGAGGGGAGTTCGAGAGGGTTAGGATGCGGANCCGCTGGGGAACCCGATGGCGGCGAGGGAANNGGAGGAGGAGTCGCGGTNGCTGCAGGCGTCGCGGGTCGGCTCGCCGGAGTCCCGCANGNCGTCGCCGGAGTTCTTNGGGGCAACANCAACAGCAACAACTCCANCGCTATACCCGCGTCGCGGGAGTTGCGTCGAGGCCAGCATCCC]




>consensus_8696#1
TCCAACCTCTCTCTCTCTCTCTCGGCGTCGGGATGATGCCGATGCCGCCGTCGGGGCAGC
GGCGGCTGGAGTTCAGCTTCCAGGGGTCGTCGGCGTCGGCGGTGGGTGGGGGAGGAGGGG
AGTTCGAGAGGGTTAGGATGCGGANCCGCTGGGGAACCCGATGGCGGCGAGGGAANNGGA
GGAGGAGTCGCGGTNGCTGCAGGCGTCGCGGGTCGGCTCGCCGGAGTCCCGCANGNCGTC
GCCGGAGTTCTTNGGGGCAACANCAACAGCAACAACTCCANCGCTATACCCGCGTCGCGG
GAGTTGCGTCGAGGCCAGCATCCC

consensusID : consensus_8696#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 200
fasta sequence

                              [GCCGTCGGGGCAGCGGCGGCTGGAGTTCAGCTTCCAGNGGTCGTCGGCGTCGGCGGTGGGTGGGGGAGGAGGGGAGTTCGAGAGGGTTAGGATGCGGANCCGCTGGGGAACCCGATGGCGGCGAGGGAAAGGGAGGAGGAGTCNCGGTGGCTNCAAGCGTCGCGGGTCGGCTCGCNGNATTCCGCAACGNTNTNGCCGAA]

[+] EMBL OSS3047A             [GCCGTCGGGGCAGCGGCGGCTGGAGTTCAGCTTCCAGNGGTCGTCGGCGTCGGCGGTGGGTGGGGGAGGAGGGGAGTTCGAGAGGGTTAGGATGCGGANCCGCTGGGGAACCCGATGGCGGCGAGGGAAAGGGAGGAGGAGTCNCGGTGGCTNCAAGCGTCGCGGGTCGGCTCGCNGNATTCCGCAACGNTNTNGCCGAA]




>consensus_8696#2
GCCGTCGGGGCAGCGGCGGCTGGAGTTCAGCTTCCAGNGGTCGTCGGCGTCGGCGGTGGG
TGGGGGAGGAGGGGAGTTCGAGAGGGTTAGGATGCGGANCCGCTGGGGAACCCGATGGCG
GCGAGGGAAAGGGAGGAGGAGTCNCGGTGGCTNCAAGCGTCGCGGGTCGGCTCGCNGNAT
TCCGCAACGNTNTNGCCGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8696#0      ----------------------------------------------GCCGTCGGGGCAGC 14
consensus_8696#2      ----------------------------------------------GCCGTCGGGGCAGC 14
consensus_8696#1      TCCAACCTCTCTCTCTCTCTCTCGGCGTCGGGATGATGCCGATGCCGCCGTCGGGGCAGC 60
                                                                    **************

consensus_8696#0      GGCGGCTGGAGTTCAGCTTCCAGGGGTCGTCGGCGTCGGCGGTGGGTGGGGGAGGAGGGG 74
consensus_8696#2      GGCGGCTGGAGTTCAGCTTCCAGNGGTCGTCGGCGTCGGCGGTGGGTGGGGGAGGAGGGG 74
consensus_8696#1      GGCGGCTGGAGTTCAGCTTCCAGGGGTCGTCGGCGTCGGCGGTGGGTGGGGGAGGAGGGG 120
                      *********************** ************************************

consensus_8696#0      AGTTCGAGAGGGTTAGGATGCGGAGCCGCTGGGGAACCCGATGGCGGCGAGGGAAGGGNA 134
consensus_8696#2      AGTTCGAGAGGGTTAGGATGCGGANCCGCTGGGGAACCCGATGGCGGCGAGGGAAAGGGA 134
consensus_8696#1      AGTTCGAGAGGGTTAGGATGCGGANCCGCTGGGGAACCCGATGGCGGCGAGGGAANNGGA 180
                      ************************ ******************************  * *

consensus_8696#0      GGAGGAGTCGCGGTGGCTGCAGGCGTCGCGGGTCGGCTCGCCGGAGTCCGGCACGCCGTC 194
consensus_8696#2      GGAGGAGTCNCGGTGGCTNCAAGCGTCGCGGGTCGGCTCGCNGNATTCCGCAACGNTNTN 194
consensus_8696#1      GGAGGAGTCGCGGTNGCTGCAGGCGTCGCGGGTCGGCTCGCCGGAGTCCCGCANGNCGTC 240
                      ********* **** *** ** ******************* * * ***   * *   * 

consensus_8696#0      GCCGGAGTTCT-GGGGGCAGCAGCAGCAGCAGCAGCTCCAGCGGCTATACCCGGCGTCGG 253
consensus_8696#2      GCCGAA------------------------------------------------------ 200
consensus_8696#1      GCCGGAGTTCTTNGGGGCAACANCAACAGCAACAACTCCANCG-CTATACCCG-CGTCGC 298
                      **** *                                                      

consensus_8696#0      CGGGGAGCTCGCCGTCGAGGGC-GCAGGCGATCGCCGGGTACCGACGCGAGATGCTCGAC 312
consensus_8696#2      ------------------------------------------------------------
consensus_8696#1      --GGGAGTTG--CGTCGAGGCCAGCATCCC------------------------------ 324
                                                                                  

consensus_8696#0      CTCGTCCGCGGCCTCCCCGAGTCCTGCTACGAGCTCTCCCTCCGCGACATCGTCGAGTCC 372
consensus_8696#2      ------------------------------------------------------------
consensus_8696#1      ------------------------------------------------------------
                                                                                  

consensus_8696#0      CCTCCTCCTCCGCCGCCGCATCCTCTCCCTCCTCCTCCCCCCACCCCACCACCTCCCACC 432
consensus_8696#2      ------------------------------------------------------------
consensus_8696#1      ------------------------------------------------------------
                                                                                  

consensus_8696#0      GCCGAAGCCA 442
consensus_8696#2      ----------
consensus_8696#1      ----------