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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8737#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 875 fasta sequence
[GGGGGGTTTGACTCGGCCAGAATAAGGGAAGCATTCGCTGAAATTGGACGGCCACCTCCGGAACCAAAGGGGATGATCGACACCTTGCCTCTGCTTACCCAGAAATTTGGGAGGAGAGCAGGGGACATGAAGATGGCAAGCTTGGCAAATTACTTTGGTCTGGGGCGACAAAGTCACAGGAGCCTTGATGATGTTAGGATGAATCTTGAAGTTCTCAAGTATTGTGCTACAGTTCTCTTCTTGGAGGCAAGTCTTCCAGGAGTGCTGACTGTTGAGAACCTGGTGGAGCGTGCAATTACAAGGAGCCAAGCTAATGGAGCTGCTTCTCCTGAGGTGCCAAAACCTGTAGCACGGTCTTCACCTGATTCCTCAAAACGGCAACGAACAATTTCTCGAGTTGACAATGCAATCCAAGCTGGAGATCGATGCAAGTTCTAGTGGGTTTTCTGGGTTCCTCGAGCCAGATGACGTTTCAACTGAGTCCATCCAAATTTCTGTTCCTTCTTCCTACCGATTAACTCGAAAAACTTCTATCAAGCACAAAGGTAGCCCGATCCAACTTTGTTGTGCCGGTCTGCGGATCCAGTTTGGAGTCAGCACAAAGTTCCTAGACAGCGCAGGTCGCCCAAAGNTGAACATACTGGTTGACATCCCTGAGAATCTCAGTAAAATTCTAGAATTCTGTGATGGTATCGCTCAGAAATCATCTCAGGATTCTGGGAGCACTTTCTGAATGGAGACCATTGATTAAAAAATATGGGTATGTGAATCGTCCTACTGTCCGNCTACACATTCCCACTATTGTCAGCGGTGAANCTGCGACCTATGGGAACCGACATATACCAGAAAGAGGCTAGCGGCAACATTCANAANCT]
[+] EMBL CA766003 [GGGGGGTTTGACTCGGCCAGAATAAGGGAAGCATTCGCTGAAATTGGACGGCCACCTCCGGAACCAAAGGGGATGATCGACACCTTGCCTCTGCTTACCCAGAAATTTGGGAGGAGAGCAGGGGACATGAAGATGGCAAGCTTGGCAAATTACTTTGGTCTGGGGCGACAAAGTCACAGGAGCCTTGATGATGTTAGGATGAATCTTGAAGTTCTCAAGTATTGTGCTACAGTTCTCTTCTTGGAGGCAAGTCTTCCAGGAGTGCTGACTGTTGAGAACCTGGTGGAGCGTGCAATTACAAGGAGCCAAGCTAATGGAGCTGCTTCTCCTGAGGTGCCAAAACCTGTAGCACGGTCTTCACCTGATTCCTCAAAACGGCAACGAACAATTTCTCGAGTTGACAATGCAATCCAAGCTGGAGATCGATGCAAGTTCTAGTGGGTTTTCTGGGTTCCTCGAGCCAGATGACGTTTCAACTGAGTCCATCCAAATTTCTGTTCCTTCTTCCTACCGATTAACTCGAAAAACTTCTATCAAGCACAAAGGTAGCCCGATCCAACTTTGTTGTGCCGGTCTGCGGATCCAGTTTGGAGTCAGCACAAAGTTCCTAGACAGCGCAGGTCGCCCAAAGNTGAACATACTGGTTGACATCCCTGAGAATCTCAGTAAAATTCTAGAATTCTGTGATGGTATCGCTCAGAAATCATCTCAGGATTCTGGGAGCACTTTCTGAATGGAGACCATTGATTAAAAAATATGGGTATGTGAATCGTCCTACTGTCCGNCTACACATTCCCACTATTGTCAGCGGTGAANCTGCGACCTATGGGAACCGACATATACCAGAAAGAGGCTAGCGGCAACATTCANAANCT]
consensusID : consensus_8737#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 661 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTATTACAGAGCATCAAAGGCATAGAGGTACTGGTAATACTTTACAGGGCATATAAATTCCTAGTTCAGGATCAACATGGGCTGCTGGTCAGATCTAACCAACACTTTGAATTATTTACATCTGGCTAACACCACTAAATTAGGGCAAGAGTTAGTTTCTAGCACTAGGATCATAAGCAGTTAGTCCGATGCTATTTGGATTGTACAACCAGCTTCTTAGCAACCAGCCGGATACCAGCATTTTGCTCGTAGTCATATAGTTCCAGGGAGAAAAATGCGTCCACCGTGTTCCCTCGAACAAACCAAGAGTCCAGGTCCGCGAGATCTACCTTGGTGAAAACTAGCTTCTGAATGGTGCCGCTAGCCTCTTTCTGGGAAATGTCGGGTCCATAGGTGGCACGTTCACCGCTGACAATAGTGCGGGATTGGGTCGGCGGACAGGCGTGACCATCCACGGGGCCATATTTTTTTACGCAATGCTACACATTCGCAGGNGGCCCCAAAACACGGACGGTTGCAGAGAAACTTTGGGGTCGCACCGTACGTGGATGGGGGGCGCGCGGGCACGAGGGGGCGGCGAGACGTCGCCAGAGGCTTAGGAGCGAAGGGTTTGGAACTAACAGGCGGCTGGGAGAGGCCGC]
[+] EMBL CA759015 [TTTTTTTTTTTTTTTTTTTTTTATTACAGAGCATCAAAGGCATAGAGGTACTGGTAATACTTTACAGGGCATATAAATTCCTAGTTCAGGATCAACATGGGCTGCTGGTCAGATCTAACCAACACTTTGAATTATTTACATCTGGCTAACACCACTAAATTAGGGCAAGAGTTAGTTTCTAGCACTAGGATCATAAGCAGTTAGTCCGATGCTATTTGGATTGTACAACCAGCTTCTTAGCAACCAGCCGGATACCAGCATTTTGCTCGTAGTCATATAGTTCCAGGGAGAAAAATGCGTCCACCGTGTTCCCTCGAACAAACCAAGAGTCCAGGTCCGCGAGATCTACCTTGGTGAAAACTAGCTTCTGAATGGTGCCGCTAGCCTCTTTCTGGGAAATGTCGGGTCCATAGGTGGCACGTTCACCGCTGACAATAGTGCGGGATTGGGTCGGCGGACAGGCGTGACCATCCACGGGGCCATATTTTTTTACGCAATGCTACACATTCGCAGGNGGCCCCAAAACACGGACGGTTGCAGAGAAACTTTGGGGTCGCACCGTACGTGGATGGGGGGCGCGCGGGCACGAGGGGGCGGCGAGACGTCGCCAGAGGCTTAGGAGCGAAGGGTTTGGAACTAACAGGCGGCTGGGAGAGGCCGC]
consensusID : consensus_8737#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence
[GAATTGTCCTACTGTCCGCCTACACATCCCCACTATTGTCAGCGGTGAAGCTGCGACCTNTGGGCCCGAAATATCCCAGAAAGAGGCTAGCGGCAACATTTCNGAAGCTAGTTTTCAGCAAGGTAGATGTCGCGGAGCTGGACTCTTGGTTTGTTCGAGGGAACATGGTGGACGCATTCTTCTCTCTGGAACTATATGACTACGAAGAAAATGCTGGTATCCGGCTGGTTGCTAAGAAGCTGGTTGTACAATCCAAATAGCATCGGACTAACTGCTTATGATCCTAGTGCTAGAAACTAACTCTTGCACTAATTTAGTGGTGTTAGCCAGATGTAAATAATTCAAAGTGTTGATTAGATCTGACCAGCAGCACATGTTGATCCTGAACTAGGAATTTATATGCGCTGTAAAATATTAACAGTACCTCTATGCCTTTGATGCTCTGTAATAAAATCTCCAGGTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU030870 [GAATTGTCCTACTGTCCGCCTACACATCCCCACTATTGTCAGCGGTGAAGCTGCGACCTNTGGGCCCGAAATATCCCAGAAAGAGGCTAGCGGCAACATTTCNGAAGCTAGTTTTCAGCAAGGTAGATGTCGCGGAGCTGGACTCTTGGTTTGTTCGAGGGAACATGGTGGACGCATTCTTCTCTCTGGAACTATATGACTACGAAGAAAATGCTGGTATCCGGCTGGTTGCTAAGAAGCTGGTTGTACAATCCAAATAGCATCGGACTAACTGCTTATGATCCTAGTGCTAGAAACTAACTCTTGCACTAATTTAGTGGTGTTAGCCAGATGTAAATAATTCAAAGTGTTGATTAGATCTGACCAGCAGCACATGTTGATCCTGAACTAGGAATTTATATGCGCTGTAAAATATTAACAGTACCTCTATGCCTTTGATGCTCTGTAATAAAATCTCCAGGTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_8737#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence
[GCGACCTATGGGACCGAAATATACCAGAAAGAGGCTAGCGGCAACATTCAGAAGCTAGTTTTCAGCAAGGTAGATGTCGCGGACTGGACTCTTGGTTTGTTCGAGGGAACATGGTGGACGCATTCTTCTCTCTGGAACTATATGACTACGAAGAAAATGCTGGTATCCGGCTGGTTGCTAAGAAGCTGGTTGTACAATCCAAATAGCATCGGACTAACTGCTTATGATCCTAGTGCTAGAAACTAACTCTTGCACTAATTTAGTGGTGTTAGCCAGATGTAAATAATTCAAAGTGTTGATTAGATCTGACCAGCAGCACATGTTGATCCTGAACTAGGAATTTATATGCGCTGTAAAATATTAACCAGTACCTCTAATGCCTTTGGATGCTCTGTAATAAAATCTCCAGGTGTTATTTCCTTGTATTTAAAAAAAA]
[+] EMBL AU071176 [GCGACCTATGGGACCGAAATATACCAGAAAGAGGCTAGCGGCAACATTCAGAAGCTAGTTTTCAGCAAGGTAGATGTCGCGGACTGGACTCTTGGTTTGTTCGAGGGAACATGGTGGACGCATTCTTCTCTCTGGAACTATATGACTACGAAGAAAATGCTGGTATCCGGCTGGTTGCTAAGAAGCTGGTTGTACAATCCAAATAGCATCGGACTAACTGCTTATGATCCTAGTGCTAGAAACTAACTCTTGCACTAATTTAGTGGTGTTAGCCAGATGTAAATAATTCAAAGTGTTGATTAGATCTGACCAGCAGCACATGTTGATCCTGAACTAGGAATTTATATGCGCTGTAAAATATTAACCAGTACCTCTAATGCCTTTGGATGCTCTGTAATAAAATCTCCAGGTGTTATTTCCTTGTATTTAAAAAAAA]
consensusID : consensus_8737#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence
[CCAAGCTGGAGGTAACCAACAATCAATCGATCCTGCAACAAACAAGGAACCCATTGAGTTGATATCCAATATCGAGGAAATGACATTAGGTTCTGGCATACAGATCGATGCAAGTTCTAGTGGGTTTTCTGGGTTCCTCGAGCCAGATGACGTTTCAACTGAGTCCATCCAAATTTCTGTTCCTTCTTCCTACCGATTAACTCGAAAAACATCTATCAAGCACAAAGGTAGCCCGATCCAACTTTGTTGTGCTGGTCTGCGGATCCAGTTTGGAGTCAGCACAAAGTTCCTAGACAGCGCAGGTCGCCCAAAGTTGAACATACTGGGTTGACATCCCTGAGAATCTCAGTAAAATTCTAGAATTCTGTGGATGGTATCGCTCAGAAATCATCTCAGGATTCTGGGNGCAC]
[+] EMBL AU030869 [CCAAGCTGGAGGTAACCAACAATCAATCGATCCTGCAACAAACAAGGAACCCATTGAGTTGATATCCAATATCGAGGAAATGACATTAGGTTCTGGCATACAGATCGATGCAAGTTCTAGTGGGTTTTCTGGGTTCCTCGAGCCAGATGACGTTTCAACTGAGTCCATCCAAATTTCTGTTCCTTCTTCCTACCGATTAACTCGAAAAACATCTATCAAGCACAAAGGTAGCCCGATCCAACTTTGTTGTGCTGGTCTGCGGATCCAGTTTGGAGTCAGCACAAAGTTCCTAGACAGCGCAGGTCGCCCAAAGTTGAACATACTGGGTTGACATCCCTGAGAATCTCAGTAAAATTCTAGAATTCTGTGGATGGTATCGCTCAGAAATCATCTCAGGATTCTGGGNGCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8737#0 GGGGGGTTTGACTCGGCCAGAATAAGGGAAGCATTCGCTGAAATTGGACGGCCACCTCCG 60
consensus_8737#4 ------------------------------------------------------------
consensus_8737#2 ------------------------------------------------------------
consensus_8737#3 ------------------------------------------------------------
consensus_8737#1 ------------------------------------------------------------
consensus_8737#0 GAACCAAAGGGGATGATCGACACCTTGCCTCTGCTTACCCAGAAATTTGGGAGGAGAGCA 120
consensus_8737#4 ------------------------------------------------------------
consensus_8737#2 ------------------------------------------------------------
consensus_8737#3 ------------------------------------------------------------
consensus_8737#1 ------------------------------------------------------------
consensus_8737#0 GGGGACATGAAGATGGCAAGCTTGGCAAATTACTTTGGTCTGGGGCGACAAAGTCACAGG 180
consensus_8737#4 ------------------------------------------------------------
consensus_8737#2 ------------------------------------------------------------
consensus_8737#3 ------------------------------------------------------------
consensus_8737#1 ------------------------------------------------------------
consensus_8737#0 AGCCTTGATGATGTTAGGATGAATCTTGAAGTTCTCAAGTATTGTGCTACAGTTCTCTTC 240
consensus_8737#4 ------------------------------------------------------------
consensus_8737#2 ------------------------------------------------------------
consensus_8737#3 ------------------------------------------------------------
consensus_8737#1 ----------------------------------------------------------TT 2
consensus_8737#0 TTGGAGGCAAGTCTTCCAGGAGTGCTGACTGTTGAGAACCTGGTGGAGCGTGCAATTACA 300
consensus_8737#4 ------------------------------------------------------------
consensus_8737#2 -------------GAATTGTCCTACTGTCCGCCTACACATCCCCACTATTGTCAGCGGTG 47
consensus_8737#3 ------------------------------------------------------------
consensus_8737#1 TTTTTTTTTTTTTTTTTTTTATTACAGAGCATCAAAGGCATAGAGGTACTGGTAATACTT 62
consensus_8737#0 AGGAGCCAAGCTAATGGAGCTGCTTCTCCTGAGGTGCCAAAACCTGTAGCACGGTCTTCA 360
consensus_8737#4 -----CCAAGCT---GGAGGTAACCAAC---AATCAATCGATCCTGCAACAAA-----CA 44
consensus_8737#2 AAGCTGCGACCTNTGGGCCCGAAATATCCCAGAAAGAGGCTAGCGGCAACATTT--CNGA 105
consensus_8737#3 -----GCGACCTATGGGACCGAAATATACCAGAAAGAGGCTAGCGGCAACATT---CAGA 52
consensus_8737#1 TACAGGGCATATAAATTCCTAGTTCAGGATCAACATGGGCTGCTGGTCAGATCTAACCAA 122
* * * * *
consensus_8737#0 CCTG---ATTCCTCAAAAC--GGCAACGAACAATTTCTCGAGTTGACAATGCAATCCAAG 415
consensus_8737#4 AGGA---ACCCATTGAGTT--GATATCCAATA--TCGAGGAAATGACATTAGGTTCTGGC 97
consensus_8737#2 AGCT---AGTTTTCAGCAA--GGTAGATGTCGCGGAGCTGGACTCTTGGTTTGTTCGAGG 160
consensus_8737#3 AGCT---AGTTTTCAGCAA--GGTAGATGTCGCGGA-CTGGACTCTTGGTTTGTTCGAGG 106
consensus_8737#1 CACTTTGAATTATTTACATCTGGCTAACACCACTAAATTAGGGCAAGAGTTAGTTTCTAG 182
* * * * *
consensus_8737#0 CTGGA-GATCG-ATGCAAG-TTCTAGTGGGTTTTCTGGGTTCCTCGAGCCAGATGACGTT 472
consensus_8737#4 ATACA-GATCG-ATGCAAG-TTCTAGTGGGTTTTCTGGGTTCCTCGAGCCAGATGACGTT 154
consensus_8737#2 GAACATGGTGG-ACGCATTCTTCTCTCTGGAACTATATGA-CTACGAAGAAAATGCTGGT 218
consensus_8737#3 GAACATGGTGG-ACGCATTCTTCTCTCTGGAACTATATGA-CTACGAAGAAAATGCTGGT 164
consensus_8737#1 CACTAGGATCATAAGCAGTTAGTCCGATGCTATT-TGGATTGTACAACCAGCTTCTTAGC 241
* * * * *** * * * * * *
consensus_8737#0 --TCAACTGAGTCCATCCAAATTT-CTGTTCCTTCTTCCTACCGATTAACTCGAAAAACT 529
consensus_8737#4 --TCAACTGAGTCCATCCAAATTT-CTGTTCCTTCTTCCTACCGATTAACTCGAAAAACA 211
consensus_8737#2 ATCCGGCTGGTTGCTAAGAAGCTGGTTGTACAATCCAAATAGCATCGGACTAACTGCTTA 278
consensus_8737#3 ATCCGGCTGGTTGCTAAGAAGCTGGTTGTACAATCCAAATAGCATCGGACTAACTGCTTA 224
consensus_8737#1 AACCAGCCGGATACCAGCATTTTGCTCGTAGTCATATAGTTCCAGGGAGAAAAATGCGT- 300
* * * * * * * ** * *
consensus_8737#0 TCTATCAAGCAC--AAAGGTAGCCC--GATCCAACTTTGTTGTGC-CGGTCTG-CGGATC 583
consensus_8737#4 TCTATCAAGCAC--AAAGGTAGCCC--GATCCAACTTTGTTGTGC-TGGTCTG-CGGATC 265
consensus_8737#2 TGATCCTAGTGCTAGAAACTAACTCTTGCACTAATTTAGTGGTGT-TAGCCAGATGTAAA 337
consensus_8737#3 TGATCCTAGTGCTAGAAACTAACTCTTGCACTAATTTAGTGGTGT-TAGCCAGATGTAAA 283
consensus_8737#1 CCACCGTGTTCCCTCGAACAAACCAAGAGTCCAGGTCCGCGAGATCTACCTTGGTGAAAA 360
* * * * * * * * * * *
consensus_8737#0 CAG--TTTGGAGT-CAGCACAAAGTTCCTAGACAGCGCAGGTCGC--CCAAAGNTGA--- 635
consensus_8737#4 CAG--TTTGGAGT-CAGCACAAAGTTCCTAGACAGCGCAGGTCGC--CCAAAGTTGA--- 317
consensus_8737#2 TAA--TTCAAAGTGTTGATTAGATCTGACCAGCAGCACATGTTGA--TC----CTGA--- 386
consensus_8737#3 TAA--TTCAAAGTGTTGATTAGATCTGACCAGCAGCACATGTTGA--TC----CTGA--- 332
consensus_8737#1 CTAGCTTCTGAATGGTGCCGCTAGCCTCTTTCTGGGAAATGTCGGGTCCATAGGTGGCAC 420
** * * * * * * ** * * **
consensus_8737#0 ACATACTGG-TTGAC--ATCCCTGAGAATCTCAGTAAAATT-CTAGAAT-TCTGTG-ATG 689
consensus_8737#4 ACATACTGGGTTGAC--ATCCCTGAGAATCTCAGTAAAATT-CTAGAAT-TCTGTGGATG 373
consensus_8737#2 ACTAGGAATTTATAT--GCGCTGTAAAATATTAAC-AGTAC-CTCTA-TGCCTTTG-ATG 440
consensus_8737#3 ACTAGGAATTTATAT--GCGCTGTAAAATATTAACCAGTAC-CTCTAATGCCTTTGGATG 389
consensus_8737#1 GTTCACCGCTGACAATAGTGCGGGATTGGGTCGGCGGACAGGCGTGACCATCCACGGGGC 480
* * * * * * * *
consensus_8737#0 GTATCGCTCAGAAATCATCTCAGGATTCTGGGAGCACTTTCTGAATGGAGACCATTGATT 749
consensus_8737#4 GTATCGCTCAGAAATCATCTCAGGATTCTGGGNGCAC----------------------- 410
consensus_8737#2 CT----CTGTAATAAAATCTCCAGGTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 496
consensus_8737#3 CT----CTGTAATAAAATCTCCAGGTGTTATTTCCTTGTATTTAAAAAAAA--------- 436
consensus_8737#1 CATATTTTTTTACGCAATGCTACACATTCGCAGGNGGCCCCAAAACACGGACGGTTGCAG 540
* * **
consensus_8737#0 AAAAAATATGGGTATGTGAATCGTCCTACTGTCCGNCTACACATTCCCACTATTGTCAGC 809
consensus_8737#4 ------------------------------------------------------------
consensus_8737#2 AAAAAA------------------------------------------------------ 502
consensus_8737#3 ------------------------------------------------------------
consensus_8737#1 AGAAACTTTGGGGTCGCACCGTACGTGGATGGGGGGCGCGCGGGCACGAGGGGGCGGCGA 600
consensus_8737#0 GGTGAANCTGCGACCTATGGGAACCGACATATACCAGAAAGAGGCTAGCGGCAACATTCA 869
consensus_8737#4 ------------------------------------------------------------
consensus_8737#2 ------------------------------------------------------------
consensus_8737#3 ------------------------------------------------------------
consensus_8737#1 GACGTCGCCAGAGGCTTAGGAGCGAAGGGTTTGGAACTAACAGGCGGCTGGGAGAGGCCG 660
consensus_8737#0 NAANCT 875
consensus_8737#4 ------
consensus_8737#2 ------
consensus_8737#3 ------
consensus_8737#1 C----- 661
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||