cluster # 8741

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Oryza sativa
cluster # 8741 cluster # 8741 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8741#0 length = 1178 sequences # 4

consensus_8741#1 length = 452 sequences # 1

consensusID : consensus_8741#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1178
fasta sequence

                              [ACCATTAATCCCAGCACTTGATATGGCTGGTAGCCTTGCTCCCATAGAAAAATGTACTGAATCCAGATACTGAACTGAGAAGCATTTGAGCTTGAGCCTTCGCAGGACATCTCTACCATTGTCAATAGATCAACGTGTCAAATCTTGGCTCATAAAAACAGATCTGGCTATTGCAAAGCTGGCTTGCACAACCAGCAATCCATGACCAAGCCTTCTTATCCACATCGTATAGAAGACCTTTTCCCTGGTTCCACGATGTGAAACATATCAAGTTGTCCTGCCCAAAGCACTCGAACCTTTCAGCAGACAACCTCAGCAAAGCCCTGAAGTACTTGGGCGGCATCCGGCTTATCTCTACCCAGACTGTCCTACCATGATCAAGCTCCCAGATCCTCATACTCTGCAGTGTGCTGTATAGCCCAATCCTTCCTACCAAGAACAACCGTGTGCGAGCTCCTGCAACTAGATATCCATCCAGCAGCGACCGTGGGAATTTGGCTGGTATATGCTCCCAATTGCCCGCATCCACTCTATACATCATCAGCCCCAGTGGCGAGAGCGTCTCCAAGTACAACCTGGAGTCACAGAACGCCATCTTCGACGAGCACAGATTCGCCGCAGGCATCATCTGATGCACTGACCACTTATTCTCCTTGGAGTCATAGACCTCGGTGGGGAGCGTCTTGTCCCCATAGACATCGCTCGCGGCGATTACCTTGAACGACCTGCGCTTCTTATCCACCGCGAGCACCAGCTGCCGCTGCTGGTTGTAATGCATGTCCGGGAGCACCCGCCAGGTCTGCGTGAGCGGATTGCAAACCACGGTGCGGAATCCGGCGCCGTCAAAGCCGGAGAAGCAGACGAGACCCCCCGAGGAGCCGACTAGCCAGAGGTCCCAGGCGGGGAGGAAGCCGAACGGGAGCTTGTAGCGGGCGCGGAGGGGCAGGCTGAGCACGCTGCACTGCGGCGGCGAGCTCGCGGCGCCCCTCCAGAAGGTGAGGAGGCAGGGCCCGTGGGAGGGGACCCCGGCGTGCGCGGCGAGGAAGGCCGGGTCGTGGAGGATGGAGTCCCAGCGGCGGGAGACGGGGCGGAGGCGGAAGAGCAGGAAGGGCGGGACGCGGGCGAGCACCTCGAGGAGGAGGTCGTCGGGGAGGGGCGCCCAGACGCGCGCAGGCATG]

[+] EMBL CB659075             [ACCATTAATCCCAGCACTTGATATGGCTGGTAGCCTTGCTCCCATAGAAAAATGTACTGAATCCAGATACTGAACTGAGAAGCATTTGAGCTTGAGCCTTCGCAGGACATCTCTACCATTGTCAATAGATCAACGTGTCAAATCTTGGCTCATAAAAACAGATCTGGCTATTGCAAAGCTGGCTTGCACAACCAGCAATCCATGACCAAGCCTTCTTATCCACATCGTATAGAAGACCTTTTCCCTGGTTCCACGATGTGAAACATATCAAGTTGTCCTGCCCAAAGCACTCGAACCTTTCAGCAGACAACCTCAGCAAAGCCCTGAAGTACTTGGGCGGCATCCGGCTTATCTCTACCCAGACTGTCCTACCATGATCAAGCTCCCAGATCCTCATACTCTGCAGTGTGCTGTATAGCCCAATCCTTCCTACCAAGAACAACCGTGTGCGAGCTCCTGCAACTAGATATCCATCCAGCAGCGACCGTGGGAATTTGGCTGGTATATGCTCCCAATTGCCCGCATCCACTCTATACATCATCAGCCCCAGTGGCGAGAGCGTCTCCAAGTACAACCTGGAGTCACAGAACGCCATCTTCGACGAGCACAGATTCGCCGCAGGCATCATCTGATGCACTGACCACTTATTCTCCTTGGAGTCATAGACCTCGGTGGGGAGCGTCTTGTCCCCATAGACATCGCTCGCGGCGATTACCTTGAACGACCTGCGCTTCTTATCCACCGCGAGCACCAGCTGCCGCTGCTGGTTGTAATGCATGTCCGGGAGCACCCGCCAGGTCTGCGTGAGCGGATTGCAAACCACGGTGCGGAATCC                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB659073             [ ctcTTTATCCCAGCACTTGATATGGCTGGTAGCCTTGCTCCACTATAAAAATGTACTGAATCCAGATACTGAACTGAGAAGCATTTGAGCTTGAGCCTTCGCAGGACATCTCTACCATTGTCAATAGATCAACGTGTCAAATCTTGGCTCATAAAAACAGATCTGGCTATTGCAAAGCTGGCTTGCACAACCAGCAATCCATGACCAAGCCTTCTTATCCACATCGTATAGAAGACCTTTTCCCTGGTTCCACGATGTGAAACATATCAAGTTGTCCTGCCCAAAGCACTCGAACCTTTCAGCAGACAACCTCAGCAAAGCCCTGAAGTACTTGGGCGGCATCCGGCTTATCTCTACCCAGACTGTCCTACCATGATCAAGCTCCCAGATCCTCATACTCTGCAGTGTGCTGTATAGCCCAATCCTTCCTACCAAGAACAACCGTGTGCGAGCTCCTGCAACTAGATATCCATCCAGCAGCGACCGTGGGAATTTGGCTGGTATATGCTCCCAATTGCCCGCATCCACTCTATACATCATCAGCCCCAGTGGCGAGAGCGTCTCCAAGTACAACCTGGAGTCACAGAACGCCATCTTCGACGAGCACAGATTCGCCGCAGGCATCATCTGATGCACTGACCACTTATTCTCCTTGGAGTCATAGACCTCGGTGGGGAGCGTCTTGTCCCCATAGACATCGCTCGCGGCGATTACCTTGAACGACCTGCGCTTCTTATCCACCGCGAGCACCAGCTGCCGCTGCTGGTTGTAATGCATGTCCGGGAGCACCCGCCAGGTCTGCGTGAGCGGATTGCAAACCACGGTGCG                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CB659072             [                                                                                                                                                                                                                                                                                                                                                                              TCCTACCATGATCAAGCTCCCAGATCCTCATACTCTGCAGTGTGCTGTATAGCCCAATCCTTCCTACCAAGAACAACCGTGTGCGAGCTCCTGCAACTAGATATCCATCCAGCAGCGACCGTGGGAATTTGGCTGGTATATGCTCCCAATTGCCCGCATCCACTCTATACATCATCAGCCCCAGTGGCGAGAGCGTCTCCAAGTACAACCTGGAGTCACAGAACGCCATCTTCGACGAGCACAGATTCGCCGCAGGCATCATCTGATGCACTGACCACTTATTCTCCTTGGAGTCATAGACCTCGGTGGGGAGCGTCTTGTCCCCATAGACATCGCTCGCGGCGATTACCTTGAACGACCTGCGCTTCTTATCCACCGCGAGCACCAGCTGCCGCTGCTGGTTGTAATGCATGTCCGGGAGCACCCGCCAGGTCTGCGTGAGCGGATTGCAAACCACGGTGCGGAATCCGGCGCCGTCAAAGCCGGAGAAGCAGACGAGACCCCCCGAGGAGCCGACTAGCCAGAGGTCCCAGGCGGGGAGGAAGCCGAACGGGAGCTTGTAGCGGGCGCGGAGGGGCAGGCTGAGCACGCTGCACTGCGGCGGCGAGCTCGCGGCGCCCCTCCAGAAGGTGAGGAGGCAGGGCCCGTGGGAGGGGACCCCGGCGTGCGCGGCGAGGAAGGCCGGGTCGTGGAGGATGGAGTCCCAGCGGCGGGAGACGGGGCGGAGGCGGAAGAGCAGGAAGGGCGGGACGCGGGCGAGCACCTCGAGGAGGAGGTCGTCGGGGAGGGGCGCCCAGACGCGCGCAGGCATG]
[-] EMBL CB659074             [                                                                                                                                                                                                                                                                                                                                                                                                                                       TCTTCCCTACCAAGAACAACCGTGTGCGAGCTCCTGCAACTAGATATCCATCCAGCAGCGACCGTGGGAATTTGGCTGGTATATGCTCCCAATTGCCCGCATCCACTCTATACATCATCAGCCCCAGTGGCGAGAGCGTCTCCAAGTACAACCTGGAGTCACAGAACGCCATCTTCGACGAGCACAGATTCGCCGCAGGCATCATCTGATGCACTGACCACTTATTCTCCTTGGAGTCATAGACCTCGGTGGGGAGCGTCTTGTCCCCATAGACATCGCTCGCGGCGATTACCTTGAACGACCTGCGCTTCTTATCCACCGCGAGCACCAGCTGCCGCTGCTGGTTGTAATGCATGTCCGGGAGCACCCGCCAGGTCTGCGTGAGCGGATTGCAAACCACGGTGCGGAATCCGGCGCCGTCAAAGCCGGAGAAGCAGACGAGACCCCCCGAGGAGCCGACTAGCCAGAGGTCCCAGGCGGGGAGGAAGCCGAACGGGAGCTTGTAGCGGGCGCGGAGGGGCAGGCTGAGCACGCTGCACTGCGGCGGCGAGCTCGCGGCGCCCCTCCAGAAGGTGAGGAGGCAGGGCCCGTGGGAGGGGACCCCGGCGTGCGCGGCGAGGAAGGCCGGGTCGTGGAGGATGGAGTCCCAGCGGCGGGAGACGGGGCGGAGGCGGAAGAGCAGGAAGGGCGGGACGCGGGCGAGCACCTCGAGGAGGAGGTCGTCGGGGAGGGGCGCCCAGACGCGCGCAGGCATG]




>consensus_8741#0
ACCATTAATCCCAGCACTTGATATGGCTGGTAGCCTTGCTCCCATAGAAAAATGTACTGA
ATCCAGATACTGAACTGAGAAGCATTTGAGCTTGAGCCTTCGCAGGACATCTCTACCATT
GTCAATAGATCAACGTGTCAAATCTTGGCTCATAAAAACAGATCTGGCTATTGCAAAGCT
GGCTTGCACAACCAGCAATCCATGACCAAGCCTTCTTATCCACATCGTATAGAAGACCTT
TTCCCTGGTTCCACGATGTGAAACATATCAAGTTGTCCTGCCCAAAGCACTCGAACCTTT
CAGCAGACAACCTCAGCAAAGCCCTGAAGTACTTGGGCGGCATCCGGCTTATCTCTACCC
AGACTGTCCTACCATGATCAAGCTCCCAGATCCTCATACTCTGCAGTGTGCTGTATAGCC
CAATCCTTCCTACCAAGAACAACCGTGTGCGAGCTCCTGCAACTAGATATCCATCCAGCA
GCGACCGTGGGAATTTGGCTGGTATATGCTCCCAATTGCCCGCATCCACTCTATACATCA
TCAGCCCCAGTGGCGAGAGCGTCTCCAAGTACAACCTGGAGTCACAGAACGCCATCTTCG
ACGAGCACAGATTCGCCGCAGGCATCATCTGATGCACTGACCACTTATTCTCCTTGGAGT
CATAGACCTCGGTGGGGAGCGTCTTGTCCCCATAGACATCGCTCGCGGCGATTACCTTGA
ACGACCTGCGCTTCTTATCCACCGCGAGCACCAGCTGCCGCTGCTGGTTGTAATGCATGT
CCGGGAGCACCCGCCAGGTCTGCGTGAGCGGATTGCAAACCACGGTGCGGAATCCGGCGC
CGTCAAAGCCGGAGAAGCAGACGAGACCCCCCGAGGAGCCGACTAGCCAGAGGTCCCAGG
CGGGGAGGAAGCCGAACGGGAGCTTGTAGCGGGCGCGGAGGGGCAGGCTGAGCACGCTGC
ACTGCGGCGGCGAGCTCGCGGCGCCCCTCCAGAAGGTGAGGAGGCAGGGCCCGTGGGAGG
GGACCCCGGCGTGCGCGGCGAGGAAGGCCGGGTCGTGGAGGATGGAGTCCCAGCGGCGGG
AGACGGGGCGGAGGCGGAAGAGCAGGAAGGGCGGGACGCGGGCGAGCACCTCGAGGAGGA
GGTCGTCGGGGAGGGGCGCCCAGACGCGCGCAGGCATG

consensusID : consensus_8741#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 452
fasta sequence

                              [AGNNCCCAGANNNNCANNNNNNNCAGTGTGCTGTATNNNNNAATCCNTNNNACCAAGAACAACCGTGTGCGAGCTNNNGCAACTAGATATCCATCCAGCAGCGACCGTGGGAATTTGGCTGGTATATGCTCCCAATTGCCCGCATCCACTCTATACATCATCAGCCCCAGTGGCGAGAGCGTCTCCAAGTACAACCTGGAGTCACAGAACGCCATCTTCGACGAGCACAGATTCGCCGCAGGCATCATCTGATGCACTGACCACTTATTCTCCTTGGAGTCATAGACCTCGGTGGGGAGCGTCTTGTCCCCATAGACATCGCTCGCGGCGATTACCTTGAACGACCTGCGCTTCTTATCCACCGCGAGCACCAGCTGCCGCTGCTGGTTGTAATGCATGTCCGGGAGCACCCGCCAGGTCTGCGTGAGCGGATTGCAAACCACGGTGCGGAA]

[-] EMBL CF197222             [AGNNCCCAGANNNNCANNNNNNNCAGTGTGCTGTATNNNNNAATCCNTNNNACCAAGAACAACCGTGTGCGAGCTNNNGCAACTAGATATCCATCCAGCAGCGACCGTGGGAATTTGGCTGGTATATGCTCCCAATTGCCCGCATCCACTCTATACATCATCAGCCCCAGTGGCGAGAGCGTCTCCAAGTACAACCTGGAGTCACAGAACGCCATCTTCGACGAGCACAGATTCGCCGCAGGCATCATCTGATGCACTGACCACTTATTCTCCTTGGAGTCATAGACCTCGGTGGGGAGCGTCTTGTCCCCATAGACATCGCTCGCGGCGATTACCTTGAACGACCTGCGCTTCTTATCCACCGCGAGCACCAGCTGCCGCTGCTGGTTGTAATGCATGTCCGGGAGCACCCGCCAGGTCTGCGTGAGCGGATTGCAAACCACGGTGCGGAA]




>consensus_8741#1
AGNNCCCAGANNNNCANNNNNNNCAGTGTGCTGTATNNNNNAATCCNTNNNACCAAGAAC
AACCGTGTGCGAGCTNNNGCAACTAGATATCCATCCAGCAGCGACCGTGGGAATTTGGCT
GGTATATGCTCCCAATTGCCCGCATCCACTCTATACATCATCAGCCCCAGTGGCGAGAGC
GTCTCCAAGTACAACCTGGAGTCACAGAACGCCATCTTCGACGAGCACAGATTCGCCGCA
GGCATCATCTGATGCACTGACCACTTATTCTCCTTGGAGTCATAGACCTCGGTGGGGAGC
GTCTTGTCCCCATAGACATCGCTCGCGGCGATTACCTTGAACGACCTGCGCTTCTTATCC
ACCGCGAGCACCAGCTGCCGCTGCTGGTTGTAATGCATGTCCGGGAGCACCCGCCAGGTC
TGCGTGAGCGGATTGCAAACCACGGTGCGGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8741#0      ACCATTAATCCCAGCACTTGATATGGCTGGTAGCCTTGCTCCCATAGAAAAATGTACTGA 60
consensus_8741#1      ------------------------------------------------------------
                                                                                  

consensus_8741#0      ATCCAGATACTGAACTGAGAAGCATTTGAGCTTGAGCCTTCGCAGGACATCTCTACCATT 120
consensus_8741#1      ------------------------------------------------------------
                                                                                  

consensus_8741#0      GTCAATAGATCAACGTGTCAAATCTTGGCTCATAAAAACAGATCTGGCTATTGCAAAGCT 180
consensus_8741#1      ------------------------------------------------------------
                                                                                  

consensus_8741#0      GGCTTGCACAACCAGCAATCCATGACCAAGCCTTCTTATCCACATCGTATAGAAGACCTT 240
consensus_8741#1      ------------------------------------------------------------
                                                                                  

consensus_8741#0      TTCCCTGGTTCCACGATGTGAAACATATCAAGTTGTCCTGCCCAAAGCACTCGAACCTTT 300
consensus_8741#1      ------------------------------------------------------------
                                                                                  

consensus_8741#0      CAGCAGACAACCTCAGCAAAGCCCTGAAGTACTTGGGCGGCATCCGGCTTATCTCTACCC 360
consensus_8741#1      ------------------------------------------------------------
                                                                                  

consensus_8741#0      AGACTGTCCTACCATGATCAAGCTCCCAGATCCTCATACTCTGCAGTGTGCTGTATAGCC 420
consensus_8741#1      --------------------AGNNCCCAGANNNNCANNNNNNNCAGTGTGCTGTATNNNN 40
                                          **  ******    **       *************    

consensus_8741#0      CAATCCTTCCTACCAAGAACAACCGTGTGCGAGCTCCTGCAACTAGATATCCATCCAGCA 480
consensus_8741#1      NAATCCNTNNNACCAAGAACAACCGTGTGCGAGCTNNNGCAACTAGATATCCATCCAGCA 100
                       ***** *   ************************   **********************

consensus_8741#0      GCGACCGTGGGAATTTGGCTGGTATATGCTCCCAATTGCCCGCATCCACTCTATACATCA 540
consensus_8741#1      GCGACCGTGGGAATTTGGCTGGTATATGCTCCCAATTGCCCGCATCCACTCTATACATCA 160
                      ************************************************************

consensus_8741#0      TCAGCCCCAGTGGCGAGAGCGTCTCCAAGTACAACCTGGAGTCACAGAACGCCATCTTCG 600
consensus_8741#1      TCAGCCCCAGTGGCGAGAGCGTCTCCAAGTACAACCTGGAGTCACAGAACGCCATCTTCG 220
                      ************************************************************

consensus_8741#0      ACGAGCACAGATTCGCCGCAGGCATCATCTGATGCACTGACCACTTATTCTCCTTGGAGT 660
consensus_8741#1      ACGAGCACAGATTCGCCGCAGGCATCATCTGATGCACTGACCACTTATTCTCCTTGGAGT 280
                      ************************************************************

consensus_8741#0      CATAGACCTCGGTGGGGAGCGTCTTGTCCCCATAGACATCGCTCGCGGCGATTACCTTGA 720
consensus_8741#1      CATAGACCTCGGTGGGGAGCGTCTTGTCCCCATAGACATCGCTCGCGGCGATTACCTTGA 340
                      ************************************************************

consensus_8741#0      ACGACCTGCGCTTCTTATCCACCGCGAGCACCAGCTGCCGCTGCTGGTTGTAATGCATGT 780
consensus_8741#1      ACGACCTGCGCTTCTTATCCACCGCGAGCACCAGCTGCCGCTGCTGGTTGTAATGCATGT 400
                      ************************************************************

consensus_8741#0      CCGGGAGCACCCGCCAGGTCTGCGTGAGCGGATTGCAAACCACGGTGCGGAATCCGGCGC 840
consensus_8741#1      CCGGGAGCACCCGCCAGGTCTGCGTGAGCGGATTGCAAACCACGGTGCGGAA-------- 452
                      ****************************************************        

consensus_8741#0      CGTCAAAGCCGGAGAAGCAGACGAGACCCCCCGAGGAGCCGACTAGCCAGAGGTCCCAGG 900
consensus_8741#1      ------------------------------------------------------------
                                                                                  

consensus_8741#0      CGGGGAGGAAGCCGAACGGGAGCTTGTAGCGGGCGCGGAGGGGCAGGCTGAGCACGCTGC 960
consensus_8741#1      ------------------------------------------------------------
                                                                                  

consensus_8741#0      ACTGCGGCGGCGAGCTCGCGGCGCCCCTCCAGAAGGTGAGGAGGCAGGGCCCGTGGGAGG 1020
consensus_8741#1      ------------------------------------------------------------
                                                                                  

consensus_8741#0      GGACCCCGGCGTGCGCGGCGAGGAAGGCCGGGTCGTGGAGGATGGAGTCCCAGCGGCGGG 1080
consensus_8741#1      ------------------------------------------------------------
                                                                                  

consensus_8741#0      AGACGGGGCGGAGGCGGAAGAGCAGGAAGGGCGGGACGCGGGCGAGCACCTCGAGGAGGA 1140
consensus_8741#1      ------------------------------------------------------------
                                                                                  

consensus_8741#0      GGTCGTCGGGGAGGGGCGCCCAGACGCGCGCAGGCATG 1178
consensus_8741#1      --------------------------------------