cluster # 8952

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Oryza sativa
cluster # 8952 cluster # 8952 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8952#0 length = 489 sequences # 3

consensus_8952#1 length = 418 sequences # 2
consensus_8952#2 length = 339 sequences # 1

consensusID : consensus_8952#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 489
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAATAAAGCCGGGGGCTTCCATTTTTTTAATTAAAATTGGCCCCCCCCAAAAAAATATAGGGGGAAAAAATCCCCTTTTTACTTAAAGTCAAAAAAAAATCGGGGGAAAAAAAAACAAAAGCAAACCCGGGGGGGTAAAATAAAAAAACAATAAACAACCGGGGAACCCCCAAAACAGGGGGGGAAACTTTTTCGAATCAAAAATAAACATTTAAACAGGGTTTTTTTTGACAAAAACGGTTTATTTGCCACCAAATTCCTTCAACCCGGGGGGTTTGGGGGCAAAAAAACTAAAAACCCCCCCCCCCCTGACTTTGTCAAACCCCATAATCCGGACAAATGCTTTGGGGTCCCCCTTTTTGGCCTCCTAAACCTCTTTGAACCCCGGGGGGGGGTAAGGGCCCCCAAACAGGGGCAGTTTCCA]

[+] EMBL CF332833             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAATAAAGGCCGGGCCTTCCATTTTTTTTATTAAAATTTGCCCCCCCCAAAAAAATTTTGTGGGAAAAAATCCCCTTTTTACTTTAAGTCAAAAAAAAATCGGGGGAAAAAAAAACAAAACCAAAGCCGGGGGGGTAAAATAAAAAAACGATAAACAACCGGGGAACCCCCAAAACAGGGGGGGAAACTTTTTCGAATCAAAAATGAACATTTAAACAGGGTTTTTTTTGACAAAAACGGTTTATTTGCCACCAAATTCTTTGAAACCGGGGGGTTTGGGGGCAAAAAAACTAAAAACCTGCCCCTGCCTGACTTTGTCAAACCCCATAATCCGGACAAATGCTTTGGGGTCCCCCTTTTTGGCCTCCTAAACCTCTTTGAACCCCGGGGGGGGGTAA                          ]
[+] EMBL CF333467             [  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAATATATATCCGGGGGCTTCCATTTTTTTAATTAAAATTGGCCCCCCCCAAAAAAATATAGGGGAAAAAAATCCCCTTTTTACTTAAAGTCAAAAAAAAATCGGGGGAAAAAAAAACAAAAGCAAACCCCGGGGGGGAAAATAAAAAAACAATAAACAACCGGGGAACCCCCAAAACAGGGGGGGAAACTTTTTCGATTCAAAAATAAACATTTAAACAGGGTTTTTTTTGACAAAAACGGTTTATTTGCCACCAAATTCCTTCAACCCCGGGGGTTTGGAGGCAAAAAAACTAAAAACCCCCCCCCCCCTGACT                                                                                                              ]
[+] EMBL CF335401             [    TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAATAAAGCCGGGGGCTTCCATTTTTTTAATTAAAATTGGCCCCCCCCAAAAAAATATAGGGGGAAAAAATCCCCTTTTTACTTAAAGTCAAAAAAAAATCGGGGGAAAAAAAAACAAAAGCAAACCCGGGGGGGTAAAATAAAAAAACAATAAACAACCGGGGAACCCCCAAAAAAGGGGGGGAAACTTTTTCGAATCAAAAATAAACAATTAAACAGGGTTTTTTTTGACAAAAACGGTTTATTTGCCACCAAACTCCTTCAACCCGGGGGGTTTGGGGGCAAAAAAACTAAAAACCCCCCCCCCCCTGACTTTGTCAAACCCCATAATCCGGACAAATGCTTTGGGGGCCCCCTTTTGGGCCTCCTAAACCTCTTTGAACCCCGGGGGGGGGTAAGGGCCCCCAAACAGGGGCAGTTTCCA]




>consensus_8952#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
AAAAAAAATAAAGCCGGGGGCTTCCATTTTTTTAATTAAAATTGGCCCCCCCCAAAAAAA
TATAGGGGGAAAAAATCCCCTTTTTACTTAAAGTCAAAAAAAAATCGGGGGAAAAAAAAA
CAAAAGCAAACCCGGGGGGGTAAAATAAAAAAACAATAAACAACCGGGGAACCCCCAAAA
CAGGGGGGGAAACTTTTTCGAATCAAAAATAAACATTTAAACAGGGTTTTTTTTGACAAA
AACGGTTTATTTGCCACCAAATTCCTTCAACCCGGGGGGTTTGGGGGCAAAAAAACTAAA
AACCCCCCCCCCCCTGACTTTGTCAAACCCCATAATCCGGACAAATGCTTTGGGGTCCCC
CTTTTTGGCCTCCTAAACCTCTTTGAACCCCGGGGGGGGGTAAGGGCCCCCAAACAGGGG
CAGTTTCCA

consensusID : consensus_8952#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 418
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAATATATAGCCCGGAGCTTCCATATTTTTAATTCACATATGCCCCACCCAACAACATATAGTCGTAGCAAATCCCCCTTTTACTTAAAGTCAAAAAAAAATCGGGGGAAACAAAAACAAAACCAAACCCCGGCCGGTAAAATCAAAAAACGATGAACAACCGGGGAACCCCCAAAACAGGGGGGGAAACTTCTTCGATTCAAAAATGAACATTTAAACAGGGTTTTTTTTGACAATGACGGTTTATTTGCCACCAAACTCCTTAAACCCCGGGGGTTTGTAGGCAAAAAACCTGATAACCTGCCCCTGCCTGACTTTGTCAAACCCGATGATACGGACAAATGCTTTAGGGTCCCCC]

[+] EMBL CF334854             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAATATATAGCCCGGAGCTTCCATATTTTTAATTCACATATGCCCCACCCAACAACATATAGTCGTAGCAAATCCCCCTTTTACTTAAAGTCAAAAAAAAATCGGGGGAAACAAAAACAAAACCAAACCCCGGCCGGTAAAATCAAAAAACGATGAACAACCGGGGAACCCCCAAAACAGGGGGGGAAACTTCTTCGATTCAAAAATGAACATTTAAACAGGGTTTTTTTTGACAATGACGGTTTATTTGCCACCAAACTCCTTAAACCCCGGGGGTTTGTAGGCAAAAAACCTGATAACC                                                         ]
[+] EMBL CF298107             [     TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAATA A AGCCCGGGGCTTCCATATTTTTAATTCAAATATGCCCCACCCAAAAAAATATAGTCGGAGCAAATCCCCCTTTTACTTTAAGTCAAAAAAAAATCGGGGGAAACAAAAACAAAAGCAAAGCCCGGCCGGTAAAATCAAAAAACGATGAACAACCGGGGAACCCCCAAAACAGGGGGGGAAACTTTTTCGAATCAAAAATGAACAATTAAACAGGGTTTTTTTTGACAATGACGGTTTATTTGCCACCAAACTCCTTCAAACCCGGGGGTTTGTAGGCAAAAAAACTGATAACCTGCCCCTGCCTGACTTTGTCAAACCCGATGATACGGACAAATGCTTTAGGGTCCCCC]




>consensus_8952#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAA
AAATATATAGCCCGGAGCTTCCATATTTTTAATTCACATATGCCCCACCCAACAACATAT
AGTCGTAGCAAATCCCCCTTTTACTTAAAGTCAAAAAAAAATCGGGGGAAACAAAAACAA
AACCAAACCCCGGCCGGTAAAATCAAAAAACGATGAACAACCGGGGAACCCCCAAAACAG
GGGGGGAAACTTCTTCGATTCAAAAATGAACATTTAAACAGGGTTTTTTTTGACAATGAC
GGTTTATTTGCCACCAAACTCCTTAAACCCCGGGGGTTTGTAGGCAAAAAACCTGATAAC
CTGCCCCTGCCTGACTTTGTCAAACCCGATGATACGGACAAATGCTTTAGGGTCCCCC

consensusID : consensus_8952#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 339
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAAAAACCCGGACCTTCCATATTTTTAATTCAAATATGCCTCACCCAAAAAAATTTTGTGGTAACAAATCCCCCTTTTACTTTAAGAAAAAAAAAAATCGGGGGAAAAAAAAACAAAAGCAAAGCCCGGGCGGTAAAATCAAAAAACGATGAACAACCGGGGAACCCCCAAAACAGGGGGGGAAACTTTTTCGAATCAAAAATGAACATTTAAACAGGGTTTTTTTTGACAAAAACGGTTTATTTGCCACCAAATTTCTTCAAACCCGGGGGCTTGTAG]

[+] EMBL CF335904             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAAAAACCCGGACCTTCCATATTTTTAATTCAAATATGCCTCACCCAAAAAAATTTTGTGGTAACAAATCCCCCTTTTACTTTAAGAAAAAAAAAAATCGGGGGAAAAAAAAACAAAAGCAAAGCCCGGGCGGTAAAATCAAAAAACGATGAACAACCGGGGAACCCCCAAAACAGGGGGGGAAACTTTTTCGAATCAAAAATGAACATTTAAACAGGGTTTTTTTTGACAAAAACGGTTTATTTGCCACCAAATTTCTTCAAACCCGGGGGCTTGTAG]




>consensus_8952#2
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAA
AAAAAACCCGGACCTTCCATATTTTTAATTCAAATATGCCTCACCCAAAAAAATTTTGTG
GTAACAAATCCCCCTTTTACTTTAAGAAAAAAAAAAATCGGGGGAAAAAAAAACAAAAGC
AAAGCCCGGGCGGTAAAATCAAAAAACGATGAACAACCGGGGAACCCCCAAAACAGGGGG
GGAAACTTTTTCGAATCAAAAATGAACATTTAAACAGGGTTTTTTTTGACAAAAACGGTT
TATTTGCCACCAAATTTCTTCAAACCCGGGGGCTTGTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8952#1      -----TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 55
consensus_8952#2      -------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 53
consensus_8952#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
                             *****************************************************

consensus_8952#1      AAAAAAAATATATAGCCCGGAGCTTCCATATTTTTAATTCACATATGCCCCACCCAACAA 115
consensus_8952#2      AAAAAAAAAAAA--ACCCGGACCTTCCATATTTTTAATTCAAATATGCCTCACCCAAAAA 111
consensus_8952#0      AAAAAAAATAAA--GCCGGGGGCTTCCATTTTTTTAATTAAAATTGGCCCCCCCCAAAAA 118
                      ******** * *   ** **  ******* ********* * **  *** * ***** **

consensus_8952#1      CATATAGTCGTAGCAAATCCCCCTTTTACTTAAAGTCAAAAAAAAATCGGGGGAAACAAA 175
consensus_8952#2      AATTTTGTGGTAACAAATCCCCCTTTTACTTTAAGAAAAAAAAAAATCGGGGGAAAAAAA 171
consensus_8952#0      AATATAGGGGGAAAAAATCCCCTTTTTACTTAAAGTCAAAAAAAAATCGGGGGAAAAAAA 178
                       ** * *  * *  ******** ******** ***  ******************* ***

consensus_8952#1      AACAAAACCAAACCCCGGCCGGTAAAATCAAAAAACGATGAACAACCGGGGAACCCCCAA 235
consensus_8952#2      AACAAAAGCAAAGCCCGGGCGGTAAAATCAAAAAACGATGAACAACCGGGGAACCCCCAA 231
consensus_8952#0      AACAAAAGCAAACCCGGGGGGGTAAAATAAAAAAACAATAAACAACCGGGGAACCCCCAA 238
                      ******* **** ** **  ******** ******* ** ********************

consensus_8952#1      AACAGGGGGGGAAACTTCTTCGATTCAAAAATGAACATTTAAACAGGGTTTTTTTTGACA 295
consensus_8952#2      AACAGGGGGGGAAACTTTTTCGAATCAAAAATGAACATTTAAACAGGGTTTTTTTTGACA 291
consensus_8952#0      AACAGGGGGGGAAACTTTTTCGAATCAAAAATAAACATTTAAACAGGGTTTTTTTTGACA 298
                      ***************** ***** ******** ***************************

consensus_8952#1      ATGACGGTTTATTTGCCACCAAACTCCTTAAACCCCGGGGGTTTGTAGGCAAAAAACCTG 355
consensus_8952#2      AAAACGGTTTATTTGCCACCAAATTTCTTCAAACCCGGGGGCTTGTAG------------ 339
consensus_8952#0      AAAACGGTTTATTTGCCACCAAATTCCTTCAACCCGGGGGGTTTGGGGGCAAAAAAACTA 358
                      *  ******************** * *** ** ** ***** ***  *            

consensus_8952#1      ATAACCTGCCCCTGCCTGACTTTGTCAAACCCGATGATACGGACAAATGCTTTAGGGTCC 415
consensus_8952#2      ------------------------------------------------------------
consensus_8952#0      AAAACCCCCCCCCCCCTGACTTTGTCAAACCCCATAATCCGGACAAATGCTTTGGGGTCC 418
                                                                                  

consensus_8952#1      CCC--------------------------------------------------------- 418
consensus_8952#2      ------------------------------------------------------------
consensus_8952#0      CCCTTTTTGGCCTCCTAAACCTCTTTGAACCCCGGGGGGGGGTAAGGGCCCCCAAACAGG 478
                                                                                  

consensus_8952#1      -----------
consensus_8952#2      -----------
consensus_8952#0      GGCAGTTTCCA 489