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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9028#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1997 fasta sequence
[CTGACCCCCCCCCCNCCCCCCCAATNTCCATAGGAGTGTGATTTGAGCTCTCAAGACCCCCCATCTTTGGTTTCGAGGAATTAATCGTCGAGGGAAGAAGGGAAGTAGAAATGGCGACGCAGT-GGTTCTCCAATATGGTGATGGATGANCCGAGCTTTTTTCACCAGTGGCAGTCGGATGGGCTGCTGGAGCAGTACACGGAGCAGCAGATCGCCGTCGCGTTCGGGCAGGCCGGCGAGGCGGACGCGGCGGCGGCGGCGGCGGCGATGATGGTTCAGCAGCAGCAGTACGCGGCGGCGGCGGCGGCGGANAACCGGCCGCGG-AAGGCGGCGAAGGTGAACACCAGCTGGGACTCGTGCATCACGGAGCAGGGCTCCCCGGCGGACTCCTCCTCGCCGACCATCCTCTCCTTCGGCGGCCACGCCGACGCCGCCGCCGCCGCGGCGTTCGCCAGCGCGGGGCAGGCGCAGAGCGCCCCGTACTACGGCGGCGCCTCCGCCGCGGCCTTGAAGCCCAAGCAGGAGCTGGACGCCGCCGCCGCGCCCTTCTCCCAGGCGCGCCCGGTCAAGCGGAGCTACGACGCCATGGTCGCCGCCGACGTCGCCAAGGCCCCCGCCGCCGCCGCCTCCCGGCCTGCCTCCCAGAACCAGGAACACATCCTCGCCGAGCGGAAGCGCCGCGAGAAGCTCAGCCAGCGCTTCATCGCCCTCTCCAAGATCGTCCCTGGCCTCAAGAAAATGGACAAGGCGTCGGTGCTGGGCGACGCGATCAAGTACGTGAAGCAGCTGCAGGACCAGGTGAAGGGGCTGGAGGAGGAGGCGCGGCGGCGGCCGGTGGAGGCGGCGGTGCTGGTGAAGAAGTCCCAGCTGTCCGCCGACGACGACGACGGCTCGTCCTGCGACGAGAACTTCGACGGCGGCGAGGCCACCGCCGGGCTGCCGGAGATCGAGGCCCGCGTGTCGGAGCGCACCGTGCTGGTCAAGATCCACTGCGAGAACCGCAAGGGCGCCCTCATCACCGCCCTCTCCGAGGTCGAGACCATCGGCCTCACCATCATGAACACCAATGTGCTCCCCTTCACCTCCTCCTCCCTCGACATCACCATCATGGCCACCGCTGGAGAGAACTTCTCATTATCAGTCAAAGATATCGTCAAGAAGCTAAATCAAGCATTCAAGTTATCCCTGTGAAGGACTTGCTTTCCTGATCAAGTCTAATCTAGATCAAATCTTTGGTTTTTAATCTTCCTACTACATTTTTATCATTAGCCTTGAGAGAAATCTGAGGCTGATGGTTCTAATTAGGTCCTTTCCCTGCTTCTGCTTCTGAAGAGAGTTTGCTTGCAATCCACCACAGAGCACACCCCCTCAAGGATTTAGCCATTAACCACCTGTTTTTGCTGCATGGGTGCAGAGAATTTGCAGATTACCTAAATATCCACCTACAAGTCTTCTATTTTCTCTCCCATCACATTTTTTTGCATGGATTGAGCTAGTCACTCCATGTTCTTGGGAGAGGGTAGAAACGTAAAAAAGAGACCTGTCTTTTTCTAGGGCCTGTTTATCAAGGGGAGTTTGACTTTATCAAAAAAACCTTATTTTCATTTCTCCCCTTCTGCAATGTTGCCCTTTGATTTCACCCTGTTTTTCTATGAGAGGATTGAGGTTTTTCAAACCCAAATACCAACCTTTGCTGGCATCTCATACACTATCCTATCACACACTGTTCCCAAACCCAAAAGGCTTCAAATTGTGGAGAAAATGGTGCCTTCCTTTTTTCAGCTCTGAGGTGGACTTTTGCAAGCTCTTGATTCAGAAGTAGTGTAGGGTGTGTGTCTCTCTTCTCTTTTTTAGGGTCATACAAGCTGGCCCCAGCTTGATTGCACCCTTTGCTTGTAGTCTCCTTTGTGGGTTTTGTTGTAACAGGATCAAGATGTAGCTGTTCCCTCTTGTTTACACAAGTATAAAAATAAATAAATGTGCTTGTTGTTAAAAAAA]
[+] EMBL AU101091 [CTGACCCCCCCCCCNCCCCCCCAATNTCCATAGGAGTGTGATTTGAGCTCTCAAGACCCCCCATNTTTGGTTTCGAGGAATTAATCGTCGAGGGAAGAAGGGAAGTAGAAATGGCGACGCAGT GGTTCTCCAATATGGTGATGGATGANCCGAGCTTTTTTCACCANTGGCANTCGGATGGGCTGCTGGAGCAGTACACGGAGCAGCANATCGCCGTCGCGTTCGGGCAGGCCGGCGAGGCGGACGCGGCGGCGGCGGCGGCGGCGATGATGGTTCAGCAGCAGCAGTACGCGGCGGCGGCGGCGGCGGANAACCGGCCGCGGAAAGGCG ]
[+] EMBL C93642 [CTGACCCCCCCCCCTNCCCCCCAATNTCCATAGGAGTNTNATTTGAGCTCTNAAGACCCCCCATCTTTGGTTTCGAGGAATTAATCGTCGAGGGAAGAAGGGAAGTAGAAATGGCGACGCAGTGGGTTCTCCAATATGGTGATGGATGANCCGAGNTTTTTTCACCAGTGGCAGTCGGATGGGCTGCTGGAGCAGTACACGGAGCAGCAGATNGCCGTCGCGTTCGGGNAGGCCG ]
[+] EMBL AK120539 [ ATAGGAGTGTGATTTGAGCTCTCAAGACCCCCCATCTTTGGTTTCGAGGAATTAATCGTCGAGGGAAGAAGGGAAGTAGAAATGGCGACGCAGT GGTTCTCCAATATGGTGATGGATGAGCCGAGCTTTTTTCACCAGTGGCAGTCGGATGGGCTGCTGGAGCAGTACACGGAGCAGCAGATCGCCGTCGCGTTCGGGCAGGCCGGCGAGGCGGACGCGGCGGCGGCGGCGGCGGCGATGATGGTGCAGCAGCAGCAGTACGCGGCGGCGGCGGCGGCGGAGCACCGGCCGCGG AAGGCGGCGAAGGTGAACACCAGCTGGGACTCGTGCATCACGGAGCAGGGCTCCCCGGCGGACTCCTCCTCGCCGACCATCCTCTCCTTCGGCGGCCACGCCGACGCCGCCGCCGCCGCGGCGTTCGCCAGCGCGGGGCAGGCGCAGAGCGCCCCGTACTACGGCGGCGCCTCCGCCGCGGCCTTGAAGCCCAAGCAGGAGCTGGACGCCGCCGCCGCGCCCTTCTCCCAGGCGCGCCCGGTCAAGCGGAGCTACGACGCCATGGTCGCCGCCGACGTCGCCAAGGCCCCCGCCGCCGCCGCCTCCCGGCCTGCCTCCCAGAACCAGGAACACATCCTCGCCGAGCGGAAGCGCCGCGAGAAGCTCAGCCAGCGCTTCATCGCCCTCTCCAAGATCGTCCCTGGCCTCAAGAAAATGGACAAGGCGTCGGTGCTGGGCGACGCGATCAAGTACGTGAAGCAGCTGCAGGACCAGGTGAAGGGGCTGGAGGAGGAGGCGCGGCGGCGGCCGGTGGAGGCGGCGGTGCTGGTGAAGAAGTCCCAGCTGTCCGCCGACGACGACGACGGCTCGTCCTGCGACGAGAACTTCGACGGCGGCGAGGCCACCGCCGGGCTGCCGGAGATCGAGGCCCGCGTGTCGGAGCGCACCGTGCTGGTCAAGATCCACTGCGAGAACCGCAAGGGCGCCCTCATCACCGCCCTCTCCGAGGTCGAGACCATCGGCCTCACCATCATGAACACCAATGTGCTCCCCTTCACCTCCTCCTCCCTCGACATCACCATCATGGCCACCGCTGGAGAGAACTTCTCATTATCAGTCAAAGATATCGTCAAGAAGCTAAATCAAGCATTCAAGTTATCCCTGTGAAGGACTTGCTTTCCTGATCAAGTCTAATCTAGATCAAATCTTTGGTTTTTAATCTTCCTACTACATTTTTATCATTAGCCTTGAGAGAAATCTGAGGCTGATGGTTCTAATTAGGTCCTTTCCCTGCTTCTGCTTCTGAAGAGAGTTTGCTTGCAATCCACCACAGAGCACACCCCCTCAAGGATTTAGCCATTAACCACCTGTTTTTGCTGCATGGGTGCAGAGAATTTGCAGATTACCTAAATATCCACCTACAAGTCTTCTATTTTCTCTCCCATCACATTTTTTTGCATGGATTGAGCTAGTCACTCCATGTTCTTGGGAGAGGGTAGAAACGTAAAAAAGAGACCTGTCTTTTTCTAGGGCCTGTTTATCAAGGGGAGTTTGACTTTATCAAAAAAACCTTATTTTCATTTCTCCCCTTCTGCAATGTTGCCCTTTGATTTCACCCTGTTTTTCTATGAGAGGATTGAGGTTTTTCAAACCCAAATACCAACCTTTGCTGGCATCTCATACACTATCCTATCACACACTGTTCCCAAACCCAAAAGGCTTCAAATTGTGGAGAAAATGGTGCCTTCCTTTTTTCAGCTCTGAGGTGGACTTTTGCAAGCTCTTGATTCAGAAGTAGTGTAGGGTGTGTGTCTCTCTTCTCTTTTTTAGGGTCATACAAGCTGGCCCCAGCTTGATTGCACCCTTTGCTTGTAGTCTCCTTTGTGGGTTTTGTTGTAACAGGATCAAGATGTAGCTGTTCCCTCTTGTTTACACAAGTATAAAAATAAATAAATGT ]
[+] EMBL BP184729 [ AGTACGTGAAGCAGCTGCAGGACCAGGTGAAGGGGCTGGAGGAGGAGGCGCGGCGGCGGCCGGTGGAGGCGGCGGTGCTGGTGAAGAAGTCCCAGCTGTCCGCCGACGACGACGACGGCTCGTCCTGCGACGAGAACTTCGACGGCGGCGAGGCCACCGCCGGGCTGCCGGAGATCGAGGCCCGCGTGTCGGAGCGCACCGTGCTGGTCAAGATCCACTGCGAGAACCGCAAGGGCGCCCTCATCACCGCCCTCTCCGAGGTCGAGACCATCGGCCTCACCATCATGAACACCAATGTGCTCCCCTTCACCTCCTCCTCCCTCGACATCACCATCATGGCCACCGCTGGAGAGAACTTCTCATTATCAGTCAAAGATATCGTCAAGAAGCTAAATCAAGCATTCAAGTTATCCCTGTGAAGGACTTGCTTTCCTGATCAAGTCTAATCTAGATCAAATCTTTGGTTTTTAATCTTCCTACTACATTTTTATCATTAGCCTTGAGAGAAATCTGAGGCTGATGGTTCTAATTAGGTCCTTTCCCTGCTTCTGCTTCTGAAGAGAGTTTGCTTGCAATCCACCACAGAGCACACCCCCTCAAGGATTTAGCCATTAACCACCTGTTTTTGCTGCATGGGTGCAGAGAATTTGCA ]
[+] EMBL AU101092 [ TTTATCAAGGGGAGTTTGACTTTATCAAAAAAACCTTATTTTCATTTCTCCCCTTCTGCAATGTTGCCCTTTGATTTCACCCTGTTTTTCTATGAGAGGATTGAGGTTTTTCAAACCCAAATACCAACCTTTGCTGGNATCTCATACACTATCCTATCACACACTGTTCCCAAACCCAAAAGGCTTCAAATTGTGGAGAAAATGGTGCCTTCCTTTTTTCAGCTCTGAGGTGGACTTTTGCAAGCTCTTGATTCAGAAGTNGTGTAGGGTGTGTGTCTCTCTTCTCTTTTTTAGGGTNATACAAGCTGGCCCCAGCTTGATTGCACCCTTTGCTTGTNGTCTCCTTTGTGGGTTTTGTTGTAACAGGATCAAGATGTAGCTGTTCCCTCTTGTTTACACAAGTATAAAAATAAATAAATGTGCTTGTTGTTAAAAAAA]
consensusID : consensus_9028#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence
[CCTCTCCCACACATTCATCACAAGAACAACTCAATCTCACTCTCTTTTGAGCACAGAAACAAATGCAAATGCTGTTGGTTCTGACTGTTGTGTTGTGGGTGTTTGGTTTATGAGCAGGAGTGTGATTTGAGCTCTCAAGACCCCCCATCTTTGGTTTCGAGGAATTAATCGTCGAGGGAAGAAGGGAAGTAGAAATGGCGACGCAGTGGTTCTCCAATATGGTGATGGATGAGCCGAGCTTTTTTCACCAGTGGCAGGCCGGCGGCGGCGGCGGAGCACCGGCCGCGGAAGGCGGCGAAGGTGAACACCAGCTGGAACTCGTGCATCACGGAGCAGGGCTCCGCGGCGGACTCCTCCTCGCCGACCATCCTCTCCTTCGGCGGCCACGCCGACGTCGTCGCCGCCGCAGCGTTCGCCATCGCGGATCAGGCGCAGACGGCCCCGTACTACGGTAGCGCCTCCGGCGCGGGCTTGAAGCCCCACCAAGAGTGGACAGCACCGGCGAGCCTTCTCCCAGGTGGGTCCGGATAAGGGAACTACGACGTCCTGTCGAGACCTTAATGGGCAATGACCCCGGCTGGA]
[+] EMBL CA755742 [CCTCTCCCACACATTCATCACAAGAACAACTCAATCTCACTCTCTTTTGAGCACAGAAACAAATGCAAATGCTGTTGGTTCTGACTGTTGTGTTGTGGGTGTTTGGTTTATGAGCAGGAGTGTGATTTGAGCTCTCAAGACCCCCCATCTTTGGTTTCGAGGAATTAATCGTCGAGGGAAGAAGGGAAGTAGAAATGGCGACGCAGTGGTTCTCCAATATGGTGATGGATGAGCCGAGCTTTTTTCACCAGTGGCAGGCCGGCGGCGGCGGCGGAGCACCGGCCGCGGAAGGCGGCGAAGGTGAACACCAGCTGGAACTCGTGCATCACGGAGCAGGGCTCCGCGGCGGACTCCTCCTCGCCGACCATCCTCTCCTTCGGCGGCCACGCCGACGTCGTCGCCGCCGCAGCGTTCGCCATCGCGGATCAGGCGCAGACGGCCCCGTACTACGGTAGCGCCTCCGGCGCGGGCTTGAAGCCCCACCAAGAGTGGACAGCACCGGCGAGCCTTCTCCCAGGTGGGTCCGGATAAGGGAACTACGACGTCCTGTCGAGACCTTAATGGGCAATGACCCCGGCTGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9028#0 CTGACCCCCCCCCCNCCCCCCCAATNTCCATAGGAGTGTGATTTGAGCTCTCAAGACCCC 60
consensus_9028#1 ----------CCTCTCCCACACATTCATCACAAGAAC--------AACTC---AATCTCA 39
** * *** * ** * ** * ** * *** * * *
consensus_9028#0 CCATCTTTGGTTTCGAGGAATTAATCGTCGAGGGAAGAAGGGAAGTAGAAATGGCGACGC 120
consensus_9028#1 CTCTCTTTTGAGCACAGAAACAAAT--GCAAATGCTGTTGGTTC-TGACTGTTGTGTTGT 96
* ***** * ** ** *** * * * * ** * * * * *
consensus_9028#0 AG-TGGTTCTCCAATATGGTGATGGATGANCCGAGCTTTTTTCACCAGTGGCAGTCGGAT 179
consensus_9028#1 GGGTGTTTGGTTTATGAGCAGGAGTGTGATTTGAGCTCTCAAGACCCCCCATCTTTGGTT 156
* ** ** ** * * * *** ***** * *** * ** *
consensus_9028#0 GGGCTGCTGGAGCAGTACACGGAGCAGCAGATCGCCGTCGCGTTCGGGCAGGCCGGCGAG 239
consensus_9028#1 ---TCGAGGAATTAAT-CGTCGAGGGAAGAAGGGAAGTAGAAAT--GGCGACGCAGTGGT 210
* * * * * * *** * * ** * * *** * * *
consensus_9028#0 GCGGACGCGGCGGCGGCGGCGGCGGCGATGATGGTTCAGCAGCAGCAGTACGCGGCGGCG 299
consensus_9028#1 TCTC-CAATATGGTGATGGATGAGCCGAGCTTTTTTCACCAGTGGCAG-----GCCGGCG 264
* * ** * ** * * *** * **** *** **** * *****
consensus_9028#0 GCGGCGGCGGANAACCGGCCGCGGAAGGCGGCGAAGGTGAACACCAGCTGGGACTCGTGC 359
consensus_9028#1 GCGGCGGCGGAGCACCGGCCGCGGAAGGCGGCGAAGGTGAACACCAGCTGGAACTCGTGC 324
*********** ************************************** ********
consensus_9028#0 ATCACGGAGCAGGGCTCCCCGGCGGACTCCTCCTCGCCGACCATCCTCTCCTTCGGCGGC 419
consensus_9028#1 ATCACGGAGCAGGGCTCCGCGGCGGACTCCTCCTCGCCGACCATCCTCTCCTTCGGCGGC 384
****************** *****************************************
consensus_9028#0 CACGCCGACGCCGCCGCCGCCGCGGCGTTCGCCAGCGCGGGGCAGGCGCAGAGCGCCCCG 479
consensus_9028#1 CACGCCGACGTCGTCGCCGCCGCAGCGTTCGCCATCGCGGATCAGGCGCAGACGGCCCCG 444
********** ** ********* ********** ***** ********** ******
consensus_9028#0 TACTACGGCGGCGCCTCCGCCGCGGCCTTGAAGCCCAAGCAGGAGCTGGACGCCGCCGCC 539
consensus_9028#1 TACTACGGTAGCGCCTCCGGCGCGGGCTTGAAGCCCCACCAAGAG-TGGACAGCACCGGC 503
******** ********* ***** ********** * ** *** ***** * *** *
consensus_9028#0 GCGCCCTTCTCCCAGGCGCGCCCGGTCAAGCGGAGCTACGACGCCATGGTCGCCGCCGAC 599
consensus_9028#1 GAGCC-TTCTCCCAGGTGGGTCCGGATAAG-GGAACTACGACGTCCTG-TCGAGACCTTA 560
* *** ********** * * **** *** *** ******** * ** *** **
consensus_9028#0 GTCGCCAAGGCCCCCGCCGCCGCCGCCTCCCGGCCTGCCTCCCAGAACCAGGAACACATC 659
consensus_9028#1 ATGGGCAATGACCCCGGCTGGA-------------------------------------- 582
* * *** * ***** *
consensus_9028#0 CTCGCCGAGCGGAAGCGCCGCGAGAAGCTCAGCCAGCGCTTCATCGCCCTCTCCAAGATC 719
consensus_9028#1 ------------------------------------------------------------
consensus_9028#0 GTCCCTGGCCTCAAGAAAATGGACAAGGCGTCGGTGCTGGGCGACGCGATCAAGTACGTG 779
consensus_9028#1 ------------------------------------------------------------
consensus_9028#0 AAGCAGCTGCAGGACCAGGTGAAGGGGCTGGAGGAGGAGGCGCGGCGGCGGCCGGTGGAG 839
consensus_9028#1 ------------------------------------------------------------
consensus_9028#0 GCGGCGGTGCTGGTGAAGAAGTCCCAGCTGTCCGCCGACGACGACGACGGCTCGTCCTGC 899
consensus_9028#1 ------------------------------------------------------------
consensus_9028#0 GACGAGAACTTCGACGGCGGCGAGGCCACCGCCGGGCTGCCGGAGATCGAGGCCCGCGTG 959
consensus_9028#1 ------------------------------------------------------------
consensus_9028#0 TCGGAGCGCACCGTGCTGGTCAAGATCCACTGCGAGAACCGCAAGGGCGCCCTCATCACC 1019
consensus_9028#1 ------------------------------------------------------------
consensus_9028#0 GCCCTCTCCGAGGTCGAGACCATCGGCCTCACCATCATGAACACCAATGTGCTCCCCTTC 1079
consensus_9028#1 ------------------------------------------------------------
consensus_9028#0 ACCTCCTCCTCCCTCGACATCACCATCATGGCCACCGCTGGAGAGAACTTCTCATTATCA 1139
consensus_9028#1 ------------------------------------------------------------
consensus_9028#0 GTCAAAGATATCGTCAAGAAGCTAAATCAAGCATTCAAGTTATCCCTGTGAAGGACTTGC 1199
consensus_9028#1 ------------------------------------------------------------
consensus_9028#0 TTTCCTGATCAAGTCTAATCTAGATCAAATCTTTGGTTTTTAATCTTCCTACTACATTTT 1259
consensus_9028#1 ------------------------------------------------------------
consensus_9028#0 TATCATTAGCCTTGAGAGAAATCTGAGGCTGATGGTTCTAATTAGGTCCTTTCCCTGCTT 1319
consensus_9028#1 ------------------------------------------------------------
consensus_9028#0 CTGCTTCTGAAGAGAGTTTGCTTGCAATCCACCACAGAGCACACCCCCTCAAGGATTTAG 1379
consensus_9028#1 ------------------------------------------------------------
consensus_9028#0 CCATTAACCACCTGTTTTTGCTGCATGGGTGCAGAGAATTTGCAGATTACCTAAATATCC 1439
consensus_9028#1 ------------------------------------------------------------
consensus_9028#0 ACCTACAAGTCTTCTATTTTCTCTCCCATCACATTTTTTTGCATGGATTGAGCTAGTCAC 1499
consensus_9028#1 ------------------------------------------------------------
consensus_9028#0 TCCATGTTCTTGGGAGAGGGTAGAAACGTAAAAAAGAGACCTGTCTTTTTCTAGGGCCTG 1559
consensus_9028#1 ------------------------------------------------------------
consensus_9028#0 TTTATCAAGGGGAGTTTGACTTTATCAAAAAAACCTTATTTTCATTTCTCCCCTTCTGCA 1619
consensus_9028#1 ------------------------------------------------------------
consensus_9028#0 ATGTTGCCCTTTGATTTCACCCTGTTTTTCTATGAGAGGATTGAGGTTTTTCAAACCCAA 1679
consensus_9028#1 ------------------------------------------------------------
consensus_9028#0 ATACCAACCTTTGCTGGCATCTCATACACTATCCTATCACACACTGTTCCCAAACCCAAA 1739
consensus_9028#1 ------------------------------------------------------------
consensus_9028#0 AGGCTTCAAATTGTGGAGAAAATGGTGCCTTCCTTTTTTCAGCTCTGAGGTGGACTTTTG 1799
consensus_9028#1 ------------------------------------------------------------
consensus_9028#0 CAAGCTCTTGATTCAGAAGTAGTGTAGGGTGTGTGTCTCTCTTCTCTTTTTTAGGGTCAT 1859
consensus_9028#1 ------------------------------------------------------------
consensus_9028#0 ACAAGCTGGCCCCAGCTTGATTGCACCCTTTGCTTGTAGTCTCCTTTGTGGGTTTTGTTG 1919
consensus_9028#1 ------------------------------------------------------------
consensus_9028#0 TAACAGGATCAAGATGTAGCTGTTCCCTCTTGTTTACACAAGTATAAAAATAAATAAATG 1979
consensus_9028#1 ------------------------------------------------------------
consensus_9028#0 TGCTTGTTGTTAAAAAAA 1997
consensus_9028#1 ------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||