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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9132#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1633 fasta sequence
[GTTTGAGCAAGAGAAGAACATAGAGGCAGCAATGACAAATTTCAAGAACACCAGGGCTGTATATGAGGAGCTTGGGAAATATGGGAGTATAGAAAATCAACTTTTATGCCGTCAGCGCATTGAGGAAGTGGAACCTATGATTGGATTTTGCTCTCGCAAACTAGGCGGATCAGCTTTGCAAGCACATGAACTACTAGATCTGGAAAAGGAGGGGCCTGCTTATGATCTTTTCAAGGCTAAGATTGAGGCTGTATTATCTGAGACAAGATCGCAGCAGGCAGCTTCCATGACCGAGTTTAGCTGGCTTGGTCGCAGATTTCCAATTACTAATGCAAAGACCCGTGTCTCCATTTTGAAAGCTCAACAGCTGGAGAAAGACTTGAATGGTGCAAACACAGAATCAGTTCCAGCGGACAAAAAACTTGGCATTTTTGACAAAATATTTTCTGCATACCATGACGCTCGGAGCTGCATCCGCAATGACTTGGCTTCTGCTGGCAATGCTGAGAATATAAGAGATGAATTGAATGGTCTTGACAAGGCTGTTAGTGCTGTCTTGGGATTCAGAACCATTGAGCGAAACCAATTACTCGTTAGTATTGCTAAAAGCAAGTTTACCAAGCACCGGGATGAGAAGAATGAGAAAATCACAAAACCAGAAGAACTTGTTCGGTTGTATGATCTGCTTATTCAAAATACAACAGATCTGACTGATTTAATTAGCTCAGGAAGGGATAAAAACAAGGAAGAGAACACTTTTATTCAGGAGTATGAGCTGAAAAGTTTGGCTTTCCGAGCTGAGAGATGTTTCTATTTGGCAAAGTCATACAGTTCAGCCGGTAAAAGGGCTGAAGCTTACGCGCTGTTTTGTCATGCCCGTTCAATCACTGATTCTGCACTGCAACAGCTGACTAACAGTCCTGACAAGGCCTTAGTCCAAGATCTTAAGGCTCTTTCTGACAGCTGTAGATCCAATAGCTTCATAGAACATGCGACAGGTATTATGGAGGAAGAGAATGTTCCTGAAAGACTTTCGAAAGGTGTCTCAACATTGTCACTTGGTGAACGAAAGGAGGCTTTCCTTCTTGATATGCTAGAAAGCTATGAATCAGCACTCGGTGAATCAAATACCAAAACACCATGTCGCATTGCACGATTCCCACCTCCATTCCAATCAGTTCCGTGTAATCCTATTGTTCTTGATATGGCCTACAATGCGATCGAGTTCCCAAACATTGAGAACAGAATGAAGAAGGAGAAGAAGGGTCTTCTCAGCAGATTCTGGGGCTGAAAAGAAGGGAGGGCGTAGTTCGACAGGATTATCTTCCTCTTGGATTTTGATACATTAGTTTGGTGGTTTGAATTGGTCTTTTCTTTTGCCATGAACTGGAACATGGCACTCTCGATTGGTGGAATGGTTTTGTTGGGCATCCCTTTCCCCTTAAGAATGTCATACTTTTTTTTTGTTAGGCAAAAAAATTTGCGTTTTCAAAGTACATCAGTTTTGAATGTCACACTAACTCGGTTACATACTGTATGAAGAGATGATTAGATCGCAGTTCAGTATTTAAATTGTCAAGCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTA]
[+] EMBL AK064573 [GTTTGAGCAAGAGAAGAACATAGAGGCAGCAATGACAAATTTCAAGAACACCAGGGCTGTATATGAGGAGCTTGGGAAATATGGGAGTATAGAAAATCAACTTTTATGCCGTCAGCGCATTGAGGAAGTGGAACCTATGATTGGATTTTGCTCTCGCAAACTAGGCGGATCAGCTTTGCAAGCACATGAACTACTAGATCTGGAAAAGGAGGGGCCTGCTTATGATCTTTTCAAGGCTAAGATTGAGGCTGTATTATCTGAGACAAGATCGCAGCAGGCAGCTTCCATGACCGAGTTTAGCTGGCTTGGTCGCAGATTTCCAATTACTAATGCAAAGACCCGTGTCTCCATTTTGAAAGCTCAACAGCTGGAGAAAGACTTGAATGGTGCAAACACAGAATCAGTTCCAGCGGACAAAAAACTTGGCATTTTTGACAAAATATTTTCTGCATACCATGACGCTCGGAGCTGCATCCGCAATGACTTGGCTTCTGCTGGCAATGCTGAGAATATAAGAGATGAATTGAATGGTCTTGACAAGGCTGTTAGTGCTGTCTTGGGATTCAGAACCATTGAGCGAAACCAATTACTCGTTAGTATTGCTAAAAGCAAGTTTACCAAGCACCGGGATGAGAAGAATGAGAAAATCACAAAACCAGAAGAACTTGTTCGGTTGTATGATCTGCTTATTCAAAATACAACAGATCTGACTGATTTAATTAGCTCAGGAAGGGATAAAAACAAGGAAGAGAACACTTTTATTCAGGAGTATGAGCTGAAAAGTTTGGCTTTCCGAGCTGAGAGATGTTTCTATTTGGCAAAGTCATACAGTTCAGCCGGTAAAAGGGCTGAATCTTACGCGCTGTTTTGTCATGCCCGTTCAATCACTGATTCTGCACTGCAACAGCTGACTAACAGTCCTGACAAGGCCTTAGTCCAAGATCTTAAGGCTCTTTCTGACAGCTGTAGATCCAATAGCTTCATAGAACATGCGACAGGTATTATGGAGGAAGAGAATGTTCCTGAAAGACTTTCGAAAGGTGTCTCAACATTGTCACTTGGTGAACGAA AGGCTTTCCTTCTTGATATGCTAGAAAGCTATGAATCAGCACTCGGTGAATCAAATACCAAAACACCATGTCGCATTGCGCGATTCCCACCTCCATTCCAATCAGTTCCGTGTAATCCTATTGTTCTTGATATGGCCTACAATGCGATCGAGTTCCCAAACATTGAGAACAGAATGAAGAAGGAGAAGAAGGGTCTTCTCAGCAGATTCTGGGGCTGAAAAGAAGGGAGGGCGTAGTTCGACAGGATTATCTTCCTCTTGGATTTTGATACATTAGTTTGGTGGTTTGAATTGGTCTTTTCTTTTGCCATGAACTGGAACATGGCACTCTCGATTGGTGGAATGGTTTTGTTGGGCATCCCTTTCCCCTTAAGAATGTCATACTTTTTTTTTGTTAGGCAAAAAAATTTGCGTTTTCAAAATACATCAGTTTTGAATGTCACACTAACTCGGTTACATACTGTATGAAGAGATGATTAGATCGCAGTTCAGTAT ]
[+] EMBL CF322959 [ TTTTATGCCGTCAGCGCATTGAGGAAGTGGAACCTATGATTGGATTTTGCTCTCGCAAACTAGGCGGATCAGCTTTGCAAGCACATGAACTACTAGATCTGGAAAAGGAGGGGCCTGCTTATGATCTTTTCAAGGCTAAGATTGAGGCTGTATTATCTGAGACAAGATCGCAGCAGGCAGCTTCCATGACCGAGTTTAGCTGGCTTGGTCGCAGATTTCCAATTACTAATGCAAAGACCCGTGTCTCCATTTTGAAAGCTCAACAGCTGGAGAAAGACTTGAATGGTGCAAACACAGAATCAGTTCCAGCGGACAAAAAACTTGGCATTTTTGACAAAATATTTTCTGCATACCATGACGCTCGGAGCTGCATCCGCAATGACTTGGCTTCTGCTGGCAATGCTGAGAATATAAGAGATGAATTGAATGGTCTTGACAAGGCTGTTAGTGCTGTCTTGGGATTCAGAACCATTGAGCGAAACCAATTACTCGTTAGTATTGCTAAAAGCAAGTTTACCAAGCACCGGGATGAGAAGAATGAGA ]
[+] EMBL CB621188 [ GCGCTTCAGATTTGCAAGCACATGAACTACTAGATCTGGAAAAGGAGGGGCCTGCTTATGATCTTTTCAAGGCTACCATTGAGGCTGTATTATCTGAGACAAGATCGCAGCAGGCAGCTTCCATGACCGAGTTTAGCTGGCTTGGTCGCAGATTTCCAATTACTAATGCAAAGACCCGTGTCTCCATTTTGAAAGCTCAACAGCTGGAGAAAGACTTGAATGGTGCAAACACAGAATCAGTTCCAGCGGACAAAAAACTTGGCATTTTTGACAAAATATTTTCTGCATACCATGATGCTCGGAGCTGCATCCGCAATGACTTGGCTTCTGCTGGCAATGCTGAGAATATAAGAGATGAATTGAATGGTCTTGACAAGGCTGTTAGTGCTGTCTTGGGATTCAGAACCATTGAGCGAAACCAATTACTCGTTAGTATTGCTAAAAGCAAGTTTACCAAGCACCGGGATGAGAAGAATGAGAAAATCACAAAACCAGAAGAACTTGTTCGGTTGTATGATCTGCTTATTCAAAATACAACAGATCTGACTGATTTAATTAGCTCAGGAAGGGATAAAAACAAGGAAGAGAACACTTTTATTCAGGAGTATGAGCTGAAAAGTTTGGCTTTCCGAGCTGAGAGATGTTTCTATTTGGCAAAGTCATACAGTTCAGCCGGTAAAAGGGCTGAAGCTTACGCGCTGTTTTGTCATGCCCGTTCAATCACTGATTCTGCACTGCAACAGCTGACTAACAGTCCTGACAAGGCCTTAGTCAAAGATCTTAAGGCTCTTT ]
[-] EMBL CA758918 [ CACTTTTNATCA GAGTATGAGCTG AAAGTTTGGCTTTCCGAGCTGAGAGATG TTCTATTTGGCAAAGTCATNCAG TCAGCCCGTAAAAGGGCTGAAGCTTACGCGCTGTTTTGTCATGCCCGTTCAATCACTGATTNTGCACTGCAACAGCTGACTAACAGTCCTGACAAGGCCTTAGTCCAAGATCTTAAGGCTCTTTCTGACAGCTGTAGATCCAATAGCTTCATAGAACATGCGACAGGTATTATGGAGGAAGAGAATGTTCCTGAAAGACTTTCGAAAGGTGTCTCAACATTGTCACTTGGTGAACGAAAGGAGGCTTTCCTTCTTGATATGCTAGAAAGCTATGAATCAGCACTCGGTGAATCAAATACCAAAACCCCATGTCGCATTGCACGATTCCCACCTCCATTCCAATCAGTTCCGTGTAATCCTATTGTTCTTGATATGGCCTACAATGCGATCGAGTTCCCAACCATTGAGACCAGAATGAAGAAGGAGAAGAAGGGTCTTCTCAGCAGATTTTGGGGCTGAAAAAAAGGGAGGGCGTAGTTCGACAGGATTATCTTCCTCTTGGATTTTGATACATTAGTTTGGTGGTTTGAATTGGTCTTTTCTTTTGCCATGAACTGGAACATGGCACTCTCGATTGGTGGAATGGTTTTGTTGGGCATCCCTTTCCCCTTAAGAATGTCATACTTTTTTTTTGTTAGGCAAAAAAATTTGGGTTTTCAAAGTACATCAGTTTTGAATGTCACACTAACTCGGTTACATACTGTATGAAAAGATGATTAGATCGCAGTTCAGTATTTAAATTGTCAAGCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTA]
[-] EMBL CB621189 [ CAGTTCAGCCGGTAAAAGGGCTGAAGCTTACGCGCTGTTTTGTCATGCCCGTTCAATCACTGATTCTGCACTGCAACAGCTGACTAACAGTCCTGACAAGGCCTTAGTCCAAGATCTTAAGGCTCTTTCTGACAGCTGTAGATCCAATAGCTTCATAGAACATGCGACAGGTATTATGGAGGAAGAGAATGTTCCTGAAAGACTTTCGAAAGGTGTCTCAACATTGTCACTTGGTGAACGAAAGGAGGCTTTCCTTCTTGATATGCTAGAAAGCTATGAATCAGCACTCGGTGAATCAAATACCAAAACACCATGTCGCATTGCACGATTCCCACCTCCATTCCAATCAGTTCCGTGTAATCCTATTGTTCTTGATATGGCCTACAATGCGATCGAGTTCCCAAACATTGAGAACAGAATGAAGAAGGAGAAGAAGGGTCTTCTCAGCAGATTCTGGGGCTGAAAAGAAGGGAGGGCGTAGTTCGACAGGATTATCTTCCTCTTGGATTTTGATACATTAGTTTGGTGGTTTGAATTGGTCTTTTCTTTTGCCATGAACTGGAACATGGCACTCTCGATTGGTGGAATGGTTTTGTTGGGCATCCCTTTCCCCTTAAGAATGTCATACTTTTTTTTTGTTAGGCAAAAAAATTTGCGTTTTCAAAGTACATCAGTTTTGAATGTCACACTAACTGGGTTTCTTA TAGGTGAAGAGA ]
consensusID : consensus_9132#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 459 fasta sequence
[GGAGGCTTTCCTTCTTGATATGCTAGAAAGCTATGAATCAGCACTCGGTGAATCTAAATACCATAACACCACTGTCGCATTGCACAGATTCCCACCTCCATTCCTATCTAGTTCCGGGTAATCCTCATTGTTCTTGATACTGGCCTACAATCGCGATCGAGTTCCCCAACATTTGACGAATCAGACATGCAAGCAATGGATGCAACGAATGGGTCTTCTCACCAGATTCGTGGGGCTNGANAAGAAGGGAGCGGTCGTAGTTCGACCAGGAGTTATCTTCCTCTTGGATTTTGATACANTACGTTTGCGCTGGTTTGAATTGGTCTNNTCTTTTGCCANGAACTGGAACATGGCACTCTCGATTGGTGGAATGGTTTTTGTTGGGCATCCCTTTCCCCTTAACAAGGTCATACTGATTTTTTGTTAGGCAAAAAAATTTGCGTTTTCATAAAAAAAAAA]
[+] EMBL BQ907839 [GGAGGCTTTCCTTCTTGATATGCTAGAAAGCTATGAATCAGCACTCGGTGAATCTAAATACCATAACACCACTGTCGCATTGCACAGATTCCCACCTCCATTCCTATCTAGTTCCGGGTAATCCTCATTGTTCTTGATACTGGCCTACAATCGCGATCGAGTTCCCCAACATTTGACGAATCAGACATGCAAGCAATGGATGCAACGAATGGGTCTTCTCACCAGATTCGTGGGGCTNGANAAGAAGGGAGCGGTCGTAGTTCGACCAGGAGTTATCTTCCTCTTGGATTTTGATACANTACGTTTGCGCTGGTTTGAATTGGTCTNNTCTTTTGCCANGAACTGGAACATGGCACTCTCGATTGGTGGAATGGTTTTTGTTGGGCATCCCTTTCCCCTTAACAAGGTCATACTGATTTTTTGTTAGGCAAAAAAATTTGCGTTTTCATAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9132#0 GTTTGAGCAAGAGAAGAACATAGAGGCAGCAATGACAAATTTCAAGAACACCAGGGCTGT 60
consensus_9132#1 ------------------------------------------------------------
consensus_9132#0 ATATGAGGAGCTTGGGAAATATGGGAGTATAGAAAATCAACTTTTATGCCGTCAGCGCAT 120
consensus_9132#1 ------------------------------------------------------------
consensus_9132#0 TGAGGAAGTGGAACCTATGATTGGATTTTGCTCTCGCAAACTAGGCGGATCAGCTTTGCA 180
consensus_9132#1 ------------------------------------------------------------
consensus_9132#0 AGCACATGAACTACTAGATCTGGAAAAGGAGGGGCCTGCTTATGATCTTTTCAAGGCTAA 240
consensus_9132#1 ------------------------------------------------------------
consensus_9132#0 GATTGAGGCTGTATTATCTGAGACAAGATCGCAGCAGGCAGCTTCCATGACCGAGTTTAG 300
consensus_9132#1 ------------------------------------------------------------
consensus_9132#0 CTGGCTTGGTCGCAGATTTCCAATTACTAATGCAAAGACCCGTGTCTCCATTTTGAAAGC 360
consensus_9132#1 ------------------------------------------------------------
consensus_9132#0 TCAACAGCTGGAGAAAGACTTGAATGGTGCAAACACAGAATCAGTTCCAGCGGACAAAAA 420
consensus_9132#1 ------------------------------------------------------------
consensus_9132#0 ACTTGGCATTTTTGACAAAATATTTTCTGCATACCATGACGCTCGGAGCTGCATCCGCAA 480
consensus_9132#1 ------------------------------------------------------------
consensus_9132#0 TGACTTGGCTTCTGCTGGCAATGCTGAGAATATAAGAGATGAATTGAATGGTCTTGACAA 540
consensus_9132#1 ------------------------------------------------------------
consensus_9132#0 GGCTGTTAGTGCTGTCTTGGGATTCAGAACCATTGAGCGAAACCAATTACTCGTTAGTAT 600
consensus_9132#1 ------------------------------------------------------------
consensus_9132#0 TGCTAAAAGCAAGTTTACCAAGCACCGGGATGAGAAGAATGAGAAAATCACAAAACCAGA 660
consensus_9132#1 ------------------------------------------------------------
consensus_9132#0 AGAACTTGTTCGGTTGTATGATCTGCTTATTCAAAATACAACAGATCTGACTGATTTAAT 720
consensus_9132#1 ------------------------------------------------------------
consensus_9132#0 TAGCTCAGGAAGGGATAAAAACAAGGAAGAGAACACTTTTATTCAGGAGTATGAGCTGAA 780
consensus_9132#1 ------------------------------------------------------------
consensus_9132#0 AAGTTTGGCTTTCCGAGCTGAGAGATGTTTCTATTTGGCAAAGTCATACAGTTCAGCCGG 840
consensus_9132#1 ------------------------------------------------------------
consensus_9132#0 TAAAAGGGCTGAAGCTTACGCGCTGTTTTGTCATGCCCGTTCAATCACTGATTCTGCACT 900
consensus_9132#1 ------------------------------------------------------------
consensus_9132#0 GCAACAGCTGACTAACAGTCCTGACAAGGCCTTAGTCCAAGATCTTAAGGCTCTTTCTGA 960
consensus_9132#1 ------------------------------------------------------------
consensus_9132#0 CAGCTGTAGATCCAATAGCTTCATAGAACATGCGACAGGTATTATGGAGGAAGAGAATGT 1020
consensus_9132#1 ------------------------------------------------------------
consensus_9132#0 TCCTGAAAGACTTTCGAAAGGTGTCTCAACATTGTCACTTGGTGAACGAAAGGAGGCTTT 1080
consensus_9132#1 ---------------------------------------------------GGAGGCTTT 9
*********
consensus_9132#0 CCTTCTTGATATGCTAGAAAGCTATGAATCAGCACTCGGTGAATC-AAATACCAAAACAC 1139
consensus_9132#1 CCTTCTTGATATGCTAGAAAGCTATGAATCAGCACTCGGTGAATCTAAATACCATAACAC 69
********************************************* ******** *****
consensus_9132#0 CA-TGTCGCATTGCAC-GATTCCCACCTCCATTCCAATC-AGTTCCGTGTAATCCT-ATT 1195
consensus_9132#1 CACTGTCGCATTGCACAGATTCCCACCTCCATTCCTATCTAGTTCCGGGTAATCCTCATT 129
** ************* ****************** *** ******* ******** ***
consensus_9132#0 GTTCTTGATA-TGGCCTACAAT-GCGATCGAGTTCCCAAACATT----------GAGAAC 1243
consensus_9132#1 GTTCTTGATACTGGCCTACAATCGCGATCGAGTTCCCCAACATTTGACGAATCAGACATG 189
********** *********** ************** ****** ** *
consensus_9132#0 AGAATGAAGAAGGAGAAGAA-GGGTCTTCTCAGCAGATTC-TGGGGCTG-AAAAGAAGGG 1300
consensus_9132#1 CAAGCAATGGATGCAACGAATGGGTCTTCTCACCAGATTCGTGGGGCTNGANAAGAAGGG 249
* * * * * * *** *********** ******* ******* * ********
consensus_9132#0 AGGG--CGTAGTTCGAC--AGGATTATCTTCCTCTTGGATTTTGATACATTA-GTTTGG- 1354
consensus_9132#1 AGCGGTCGTAGTTCGACCAGGAGTTATCTTCCTCTTGGATTTTGATACANTACGTTTGCG 309
** * *********** * ************************** ** *****
consensus_9132#0 -TGGTTTGAATTGGTCTTTTCTTTTGCCATGAACTGGAACATGGCACTCTCGATTGGTGG 1413
consensus_9132#1 CTGGTTTGAATTGGTCTNNTCTTTTGCCANGAACTGGAACATGGCACTCTCGATTGGTGG 369
**************** ********** ******************************
consensus_9132#0 AATGGTTTT-GTTGGGCATCCCTTTCCCCTTAAGAATGTCATACTTTTTTTTTGTTAGGC 1472
consensus_9132#1 AATGGTTTTTGTTGGGCATCCCTTTCCCCTTAACAAGGTCATACTGATTTTTTGTTAGGC 429
********* *********************** ** ******** *************
consensus_9132#0 AAAAAAATTTGCGTTTTCAAAGTACATCAGTTTTGAATGTCACACTAACTCGGTTACATA 1532
consensus_9132#1 AAAAAAATTTGCGTTTTCATAAAAAAAAAA------------------------------ 459
******************* * * * *
consensus_9132#0 CTGTATGAAGAGATGATTAGATCGCAGTTCAGTATTTAAATTGTCAAGCCTAAAAAAAAA 1592
consensus_9132#1 ------------------------------------------------------------
consensus_9132#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTA 1633
consensus_9132#1 -----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||