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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9142#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1672 fasta sequence
[CTTTGTAAAAAAAAAAAAACAACTACAGAAGAGAGAGAGAGAGAGAGAGAGAGAGGGGAAGCGTCAACCTCCCGAATCCATCGCCGCCGCCGCCGCCGCCGGCGATGTCTCCGCCGGCCGACACCGCCGCGCTCGCCTCCACGTCCGGCGCCCCGCTCGCGCCCCTCGTCGCCGCCCAGCTCAACTTCGTCCTCTCCCAAGCCAACCTCCCCATCAGGGTGGGGCAGATCTGGTCCGGATGCCGCGACGGCCGCTACGCCGATCGCTTCACGCTCGCCATCCCCTTCTGCCTCGACTACGTCTACTGGGACTTCCTGTACAATGCGCTGTCGCCGAAGGTGGCGCCGGATGTGGTGTTCGGCCCGGACGACGAGGGGTTTCAGCCGCTAGTCGATTTCGATGAGACCGGGAGTGGGGAGAAGAGCTGCTTGGCAAATTGGGATTGCCGGGACACCTCGGCCCTCCTCTCTCTCATCAAAGAGCTCCGTGAATTTTATATTGAATACCAAAAGAAGCGGGCAGCCGAGGTTGATGACGCAAGACTGAAATTTGAAATAAGCACAGTTCTGTCTAAGGAGGGGATTGAAGTCTGCACGGTATCGTCCAATGGTAGACCAGATGAGGTGAAATTTGCTGTCCCACTTCTGGATCTGGACCTTGCCAAACTGGTTCCTGGATGTCCTTGGAAACTTCCTCAAAAGATCCATTTGCAGGCTGTTTTTCCAATTAGCAGAAGTTACTCCTCTGTTCCTTCTGCACCACGACTCAAATTAGTCTCAACCCCAGATTTGAAGTCATTTTTCTCAGTTGATGATGTTAAACTCCCTCCATGGTTAGATGGAATGTGCATGGCTGAGTATCTTCCTAACTTGGAAGAAAATCTTAAAATCCAGGTTGTGGAAGCATCAGCTTCAATTGGTTCTAGAAGACGTTTCATTGAAGCATTGGCTCCTACTTTTGGAAGGCCATTAGAGGCTGATCCGATTTTTTGCAGAAAAGCTACGATTCTTTCCATCTCAGGGATTTTCACTTTTCTGGTCCACTTTGTCATTCCCCTCCAATTCCCTAAGCATCAACCTGTGCTGACATTAGAGAGTTCTCAGCACTTCAATGCCCAGGGGTTACCTATCATGTCAGCTCCAGTAAATGACTATCCCTGGAGCCCTAGATGGGATCCAACAGAAATGGTTGAACGCATCTATGACTTTTTGGTTGACGAGTGCCAAAC-TTTCAAGAAGTTTTGCAGCGATTCTATCCCTCAACAGAAGTAGCTGATAAGGAAGCATCTCTGTTACTGCCGGCTTGCTCGGTCTGCTCGCAAGTTGCAACCTGTATTCCCCAACCTGGCAAGTAAATTTGTAAGCTCAAGAAGAAGCCTAGTCAGGCAGTAGAATCCATAAGATTTGGATAGGTGCGCTTCTGTTTGACAAGTAAATTGTGTACA-CTAGAGCAAAGCTGGGCATATGTTTTGTTGGTTAACCCCATTGCTGCTGGTCCTAGACTCCTACCTTGTGATTGCTGGGATAAATGGCAACCCAATTGTTCCTGCCATGTACATACAGATACCGCACGTTTACCACCGGCCGTTTCTTTCACTGTAAAGTTTGATGCAAGTGACCTCTGGCTGCTATGGTTTACTGTACTTAATGATTTACTAGTACTACAAAAAAAA]
[+] EMBL AK102724 [CTTTGTAAAAAAAAAAAAACAACTACAGAAGAGAGAGAGAGAGAGAGAGAGAGAGGGGAAGCGTCAACCTCCCGAATCCATCGCCGCCGCCGCCGCCGCCGGCGATGTCTCCGCCGGCCGACACCGCCGCGCTCGCCTCCACGTCCGGCGCCCCGCTCGCGCCCCTCGTCGCCGCCCAGCTCAACTTCGTCCTCTCCCAAGCCAACCTCCCCATCAGGGTGGGGCAGATCTGGTCCGGATGCCGCGACGGCCGCTACGCCGATCGCTTCACGCTCGCCATCCCCTTCTGCCTCGACTACGTCTACTGGGACTTCCTGTACAATGCGCTGTCGCCGAAGGTGGCGCCGGATGTGGTGTTCGGCCCGGACGACGAGGGGTTTCAGCCGCTAGTCGATTTCGATGAGACCGGGAGTGGGGAGAAGAGCTGCTTGGCAAATTGGGATTGCCGGGACACCTCGGCCCTCCTCTCTCTCATCAAAGAGCTCCGTGAATTTTATATTGAATACCAAAAGAAGCGGGCAGCCGAGGTTGATGACGCAAGACTGAAATTTGAAATAAGCACAGTTCTGTCTAAGGAGGGGATTGAAGTCTGCACGGTATCGTCCAATGGTAGACCAGATGAGGTGAAATTTGCTGTCCCACTTCTGGATCTGGACCTTGCCAAACTGGTTCCTGGATGTCCTTGGAAACTTCCTCAAAAGATCCATTTGCAGGCTGTTTTTCCAATTAGCAGAAGTTACTCCTCTGTTCCTTCTGCACCACGACTCAAATTAGTCTCAACCCCAGATTTGAAGTCATTTTTCTCAGTTGATGATGTTAAACTCCCTCCATGGTTAGATGGAATGTGCATGGCTGAGTATCTTCCTAACTTGGAAGAAAATCTTAAAATCCAGGTTGTGGAAGCATCAGCTTCAATTGGTTCTAGAAGACGTTTCATTGAAGCATTGGCTCCTACTTTTGGAAGGCCATTAGAGGCTGATCCGATTTTTTGCAGAAAAGCTACGATTCTTTCCATCTCAGGGATTTTCACTTTTCTGGTCCACTTTGTCATTCCCCTCCAATTCCCTAAGCATCAACCTGTACTGACATTAGAGAGTTCTCAGCACTTCAATGCCCAGGGGTTACCTATCATGTCAGCTCCAGTAAATGACTATCCCTGGAGCCCTAGATGGGATCCAACAGAAATGGTTGAACGCATCTATGACTTTTTGGTTGACGAGTGCCAAAC TTTCAAGAAGTTTTGCAGCGATTCTATCCCTCAACAGAAGTAGCTGATAAGGAAGCATCTCTGTTACTGCCGGCTTGCTCGGTCTGCTCGCAAGTTGCAACCTGTATTCCCCAACCTGGCAAGTAAATTTGTAAGCTCAAGAAGAAGCCTAGTCAGGCAGTAGAATCCATAAGATTTGGATAGGTGCGCTTCTGTTTGACAAGTAAATTGTGTACA CTAGAGCAAAGCTGGGCATATGTTTTGTTGGTTAACCCCATTGCTGCTGGTCCTAGACTCCTACCTTGTGATTGCTGGGATAAATGGCAACCCAATTGCTCCTGCCATGTACATACAGATACCGCACGTTTACCACCGGCCGTTTCTTTCACTGTAAAGTTTGATGCAAGTGACCTCTGGCTGCTATGGTTTACTGTACTTAATGATTTACTAGTACTACA ]
[+] EMBL AK059304 [ GAGAGAGAGGGGAAGCGTCAACCTCCCGAATCCATCGCCGCCGCCGCCGCCGCCGGCGATGTCTCCGCCGGCCGACACCGCCGCGCTCGCCTCCACGTCCGGCGCCCCGCTCGCGCCCCTCGTCGCCGCCCAGCTCAACTTCGTCCTCTCCCAAGCCAACCTCCCCATCAGGGTGGGGCAGATCTGGTCCGGATGCCGCGACGGCCGCTACGCCGATCGCTTCACGCTCGCCATCCCCTTCTGCCTCGACTACGTCTACTGGGACTTCCTGTACAATGCGCTGTCGCCGAAGGTGGCGCCGGATGTGGTGTTCGGCCCGGACGACGAGGGGTTTCAGCCGCTAGTCGATTTCGATGAGACCGGGAGTGGGGAGAAGAGCTGCTTGGCAAATTGGGATTGCCGGGACACCTCGGCCCTCCTCTCTCTCATCAAAGAGCTCCGTGAATTTTATATTGAATACCAAAAGAAGCGGGCAGCCGAGGTTGATGACGCAAGACTGAAATTTGAAATAAGCACAGTTCTGTCTAAGGAGGGGATTGAAGTCTGCACGGTATCGTCCAATGGTAGACCAGATGAGGTGAAATTTGCTGTCCCACTTCTGGATCTGGACCTTGCCAAACTGGTTCCTGGATGTCCTTGGAAACTTCCTCAAAAGATCCATTTGCAGGCTGTTTTTCCAATTAGCAGAAGTTACTCCTCTGTTCCTTCTGCACCACGACTCAAATTAGTCTCAACCCCAGATTTGAAGTCATTTTTCTCAGTTGATGATGTTAAACTCCCTCCATGGTTAGATGGAATGTGCATGGCTGAGTATCTTCCTAACTTGGAAGAAAATCTTAAAATCCAGGTTGTGGAAGCATCAGCTTCAATTGGTTCTAGAAGACGTTTCATTGAAGCATTGGCTCCTACTTTTGGAAGGCCATTAGAGGCTGATCCGATTTTTTGCAGAAAAGCTACGATTCTTTCCATCTCAGGGATTTTCACTTTTCTGGTCCACTTTGTCATTCCCCTCCAATTCCCTAAGCATCAACCTGTGCTGACATTAGAGAGTTCTCAGCACTTCAATGCCCAGGGGTTACCTATCATGTCAGCTCCAGTAAATGACTATCCCTGGAGCCCTAGATGGGATCCAACAGAAATGGTTGAACGCATCTATGACTTTTTGGTTGACGAGTGCCAAAC TTTCAAGAAGTTTTGCAGCGATTCTATCCCTCAACAGAAGTAGCTGATAAGGAAGCATCTCTGTTACTGCCGGCTTGCTCGGTCTGCTCGCAAGTTGCAACCTGTATTCCCCAACCTGGCAAGTAAATTTGTAAGCTCAAGAAGAAGCCTAGTCAGGCAGTAGAATCCATAAGATTTGGGTAGGTGCGCTTCTGTCTGACAAGTAAATTGTGTACA CTAGAGCAAAGCTGGGCATATGTTTTGTTGGTTAACCCCATTGCTGCTGGTCCTAGACTCCTACCTTGTGATTGCTGGGATAAATGGCAACCCAATTGCTCCTGCCATGTACATACAGATACCGCACGTTTACCACCGGCCGTTTCTTTCACTGTAAAGTTTGATGCAAGTGACCTCTGGCTGCTATGGTTTACTGTACTTAATGATTTACTAG ]
[+] EMBL BI811904 [ TTCCCTAAGCATCAACCTGTGCTGACATTAGAGAGTTCTCAGCACTTCAATGCCCAGGGGTTACCTATCATGTCAGCTCCAGTAAATGACTAT CCTGGAGCCCTAGATGGGATCCAACAGAAATGGTTGAACGCATCTATGATTTTTTGGTTGACGAGTGCC AAC TTTCAAGAAGTTTTGCAGCGATTCTATCCCTC ACAGAAGTAGCTGATAAGGAAGCATCTCTGTTACTGCCGGCTTGCTCGGTCTGCTCGCAAGTTGCAACCTGTATTCCCCAACCTGGCAAGTAAATTTGTAAGCTCAAGAGGAAGCCTAGTCAGGCAGTAGAATCCATAAGATTTGGATAGGTGCGCTTCTGTTTGACAAGTAAATTGTGTACA CTAGAGC AAGCTGGGCATATGTTTTGTTGGTTAACCCCATTGCTGCTGGTCCTAGACTCCTACCTTGTGATTGCTGGGATAAATGGCAACCC ATTGTTCCTGCCcaaaaa ]
[+] EMBL CA757615 [ TGCCAAACGTTTCAAGAAGTTTTGCAGCGATTCTATCCCTCAACAGAAGTAGCTGATAAGGAAGCATCTCTGTTACTGCCGGCTTGCTCGGTCTGCTCGCAAGTTGCAACCTGTATTCCCCAACCTGGCAAGTAAATTTGTAAGCTCAAGAGGAAGCCTAGTCAGGCAGTAGAATCCATAAGATTTGGATAGGTGCGCTTCTGTTTGACAAGTAAATTGTGTACA CTAGAGCAAAGCTGGGCATATGTTTTGTTGGTTAACCCCATTGCTGCTGGTCCTAGACTCCTACCTTGTGATTGCTGGGATAAATGGCAACCCAATTGTTCCTGCCATGTACATACAGATACCGCACGTTTACCACCGGCCGTTTCTTTCACTGTAAAGTTTGATGCAAGTGACCTCTGGCTGCTATGGTTTACTGTACTTAATGATTTACTAGTACTACAAAAAAAA]
[+] EMBL BQ908531 [ ccgGTCAGGCAGTAGAATCCATAAGATTTGGATAGGTGCGCTTCTGTTTGACAAGTAAATTGTGTACACCTAGAGCAAAGCTGGGCATATGTTTTGTTGGTTAACCCCATTGCTGCTGGTCCTAGACTCCTACCTTGTGATTGCTGGGATAAATGGCAACCCAATTGTTCCTGCCATGTACATACAGATACCGCACGTTTACCACCGGCCGTTTCTTTCACTGTAAAGTTTGATGCAAGTGACCTCTGGCTGCTATGGTTTACTGTACTTAATGATTTACTAGTA AAAAAAAA ]
consensusID : consensus_9142#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence
[TACTTTACATCGTAGTGTAGTTGTCATGTTAATGGAATGACTAATCATCCTTTGAAAAATAGTGTGCGGAAAATAAGTGAGGATTGAGGAATATAAAGAAAAGGATAGACAGTAGATCTGATGCTATTGTTGAATTGTTTAGGTGATTCAAGCAAGAAAAAATTTCCTGTATTTCAATCTTATTATTTAGTGGAAGTACCTTTATGCATAAAATGTACATCCTTTCCCATTATTTTAAGCATACTAGACTTACTGGAAACTAGCTACTACTGAATCATTTATCAGTTAGATGAGGTATTGCTAAAGGTAGCATGGCATAGCATTAATCGTGCAACTCGTGTCTGTTATACAAAACTTATGTTTCTAATCTATACCGAAGGTTGTGGAAGCATCAGCTTCAATTGGTTCTAGAAGACGTTTCATTGAAGCATTGGCTCCTACTTTTGGAAGGCCATTAGAGGCTGATC]
[+] EMBL CF323565 [TACTTTACATCGTAGTGTAGTTGTCATGTTAATGGAATGACTAATCATCCTTTGAAAAATAGTGTGCGGAAAATAAGTGAGGATTGAGGAATATAAAGAAAAGGATAGACAGTAGATCTGATGCTATTGTTGAATTGTTTAGGTGATTCAAGCAAGAAAAAATTTCCTGTATTTCAATCTTATTATTTAGTGGAAGTACCTTTATGCATAAAATGTACATCCTTTCCCATTATTTTAAGCATACTAGACTTACTGGAAACTAGCTACTACTGAATCATTTATCAGTTAGATGAGGTATTGCTAAAGGTAGCATGGCATAGCATTAATCGTGCAACTCGTGTCTGTTATACAAAACTTATGTTTCTAATCTATACCGAAGGTTGTGGAAGCATCAGCTTCAATTGGTTCTAGAAGACGTTTCATTGAAGCATTGGCTCCTACTTTTGGAAGGCCATTAGAGGCTGATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9142#0 CTTTGTAAAAAAAAAAAAACAACTACAGAAGAGAGAGAGAGAGAGAGAGAGAGAGGGGAA 60
consensus_9142#1 ------------------------------------------------------------
consensus_9142#0 GCGTCAACCTCCCGAATCCATCGCCGCCGCCGCCGCCGCCGGCGATGTCTCCGCCGGCCG 120
consensus_9142#1 ------------------------------------------------------------
consensus_9142#0 ACACCGCCGCGCTCGCCTCCACGTCCGGCGCCCCGCTCGCGCCCCTCGTCGCCGCCCAGC 180
consensus_9142#1 ------------------------------------------------------------
consensus_9142#0 TCAACTTCGTCCTCTCCCAAGCCAACCTCCCCATCAGGGTGGGGCAGATCTGGTCCGGAT 240
consensus_9142#1 ------------------------------------------------------------
consensus_9142#0 GCCGCGACGGCCGCTACGCCGATCGCTTCACGCTCGCCATCCCCTTCTGCCTCGACTACG 300
consensus_9142#1 ------------------------------------------------------------
consensus_9142#0 TCTACTGGGACTTCCTGTACAATGCGCTGTCGCCGAAGGTGGCGCCGGATGTGGTGTTCG 360
consensus_9142#1 ------------------------------------------------------------
consensus_9142#0 GCCCGGACGACGAGGGGTTTCAGCCGCTAGTCGATTTCGATGAGACCGGGAGTGGGGAGA 420
consensus_9142#1 ------------------------------------------------------------
consensus_9142#0 AGAGCTGCTTGGCAAATTGGGATTGCCGGGACACCTCGGCCCTCCTCTCTCTCATCAAAG 480
consensus_9142#1 ---------------------------------------------TACTTTACATCGTAG 15
* * **** **
consensus_9142#0 AGCTCCGTGAATTTTATATTGAATACCAAAAGAAGCGGGCAGCCGAGGTTGATGACGCAA 540
consensus_9142#1 TGTAGTTGTCATGTTA-ATGGAATGACTAATCATCCTTTGAAAAATAGTGTGCGGAAAAT 74
* ** *** ** **** * ** * * * ** * *
consensus_9142#0 GACTGAAATTTGAAATAAGCACAGTTCTGTCTAAGGAGGGGAT-TGAAGTCTGCACGGTA 599
consensus_9142#1 AAGTGAGGATTGAGGAATATAAAGAAAAGGATAGACAGTAGATCTGATGCTATTGTTGAA 134
* *** **** * * ** * ** ** *** *** * * *
consensus_9142#0 TCGTCCAATGGTAGACCAGATGAGGTGAAATTTGCTGTCCCACTTCTGGATCTGGACCTT 659
consensus_9142#1 TTGTTTA--GGTGATTCAAGCAAGAAAAAATTTCCTGT-----------ATTTCAATCTT 181
* ** * *** ** ** ****** **** ** * * ***
consensus_9142#0 GCCAAACTGGTTCCTGGATGTCCTTGGAAACTTCCTCAAAAGATCCATTTGCAGGCTGTT 719
consensus_9142#1 -----ATTATTTAGTGGAAGTACCTTTATGCAT----AAAATGTACATCCTTTCCCATTA 232
* * ** **** ** * * * * * **** * *** * *
consensus_9142#0 TTTCCAATTAGCAGAAGTTACTCCTCTGTTCCTTCTGCACCACGACTCAAATTAGTCTCA 779
consensus_9142#1 TTTTAAGCATACTAGACTTACTGGAAACTAGCTACTACTGAATCATTTA--TCAGT---- 286
*** * * * ***** * ** ** * * * * * * ***
consensus_9142#0 ACCCCAGATTTGAAGTCATTTTTCTCAGTTG-ATGATGTTAAACTCCCTCCATGGTTAG- 837
consensus_9142#1 ----TAGAT---GAGGTATTGCTAAAGGTAGCATGGCATAGCATTAATCGTGCAACTCGT 339
**** ** *** * ** * *** * * * * *
consensus_9142#0 ATGGAATGTGCATGGCTGAGTATCTTCCTAACTTGGAAGAAAATCTTAAAATCCAGGTTG 897
consensus_9142#1 GTCTGTTATACAAAACT---TATGTTTCTAATCTATACCGAA-------------GGTTG 383
* * * ** ** *** ** **** * * ** *****
consensus_9142#0 TGGAAGCATCAGCTTCAATTGGTTCTAGAAGACGTTTCATTGAAGCATTGGCTCCTACTT 957
consensus_9142#1 TGGAAGCATCAGCTTCAATTGGTTCTAGAAGACGTTTCATTGAAGCATTGGCTCCTACTT 443
************************************************************
consensus_9142#0 TTGGAAGGCCATTAGAGGCTGATCCGATTTTTTGCAGAAAAGCTACGATTCTTTCCATCT 1017
consensus_9142#1 TTGGAAGGCCATTAGAGGCTGATC------------------------------------ 467
************************
consensus_9142#0 CAGGGATTTTCACTTTTCTGGTCCACTTTGTCATTCCCCTCCAATTCCCTAAGCATCAAC 1077
consensus_9142#1 ------------------------------------------------------------
consensus_9142#0 CTGTGCTGACATTAGAGAGTTCTCAGCACTTCAATGCCCAGGGGTTACCTATCATGTCAG 1137
consensus_9142#1 ------------------------------------------------------------
consensus_9142#0 CTCCAGTAAATGACTATCCCTGGAGCCCTAGATGGGATCCAACAGAAATGGTTGAACGCA 1197
consensus_9142#1 ------------------------------------------------------------
consensus_9142#0 TCTATGACTTTTTGGTTGACGAGTGCCAAACTTTCAAGAAGTTTTGCAGCGATTCTATCC 1257
consensus_9142#1 ------------------------------------------------------------
consensus_9142#0 CTCAACAGAAGTAGCTGATAAGGAAGCATCTCTGTTACTGCCGGCTTGCTCGGTCTGCTC 1317
consensus_9142#1 ------------------------------------------------------------
consensus_9142#0 GCAAGTTGCAACCTGTATTCCCCAACCTGGCAAGTAAATTTGTAAGCTCAAGAAGAAGCC 1377
consensus_9142#1 ------------------------------------------------------------
consensus_9142#0 TAGTCAGGCAGTAGAATCCATAAGATTTGGATAGGTGCGCTTCTGTTTGACAAGTAAATT 1437
consensus_9142#1 ------------------------------------------------------------
consensus_9142#0 GTGTACACTAGAGCAAAGCTGGGCATATGTTTTGTTGGTTAACCCCATTGCTGCTGGTCC 1497
consensus_9142#1 ------------------------------------------------------------
consensus_9142#0 TAGACTCCTACCTTGTGATTGCTGGGATAAATGGCAACCCAATTGTTCCTGCCATGTACA 1557
consensus_9142#1 ------------------------------------------------------------
consensus_9142#0 TACAGATACCGCACGTTTACCACCGGCCGTTTCTTTCACTGTAAAGTTTGATGCAAGTGA 1617
consensus_9142#1 ------------------------------------------------------------
consensus_9142#0 CCTCTGGCTGCTATGGTTTACTGTACTTAATGATTTACTAGTACTACAAAAAAAA 1672
consensus_9142#1 -------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||