|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9205#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence
[TACGTACCGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAACCCATGGGATCCCTTTTTTATTTAGGGGGGCAAAGGAAACAGCACCCCCCCCATCTTGGGTTTTTTTTTAACAAAAAGAAAGTTACCCCTTTTCCCCACCGGGTGCCAAAAAAAATCAACCCATTTTGGTTCCCCCATGGGCCAGGGGGCTCCAAACAAACTGGTAAACTCCTTCAATCCCCCCTCAAAAAGGAGTAGGGCAAAGGAAATCTCATTTTTTCCCCCCCCGAGCTTGGTTTTTTGAGTCCCCAACAAGGCCCCCAAGAAACCCCAACAGGGGTACCAAAACGGGAAATTTTTGGGGGCTTTTGGAACCCGGGATTTTTTTCTTTGGGCGGGTTAACA]
[+] EMBL CF309091 [TACGTACCGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAACCCATGGGATCCCTTTTTTATTTAGGGGGGCAAAGGAAACAGCACCCCCCCCATCTTGGGTTTTTTTTTAACAAAAAGAAAGTTACCCCTTTTCCCCACCGGGTGCCAAAAAAAATCAACCCATTTTGGTTCCCCCATGGGCCAGGGGGCTCCAAACAAACTGGTAAACTCCTTCAATCCCCCCTCAAAAAGGAGTAGGGCAAAGGAAATCTCATTTTTTCCCCCCCCGAGCTTGGTTTTTTGAGTCCCCAACAAGGCCCCCAAGAAACCCCAACAGGGGTACCAAAACGGGAAATTTTTGGGGGCTTTTGGAACCCGGGATTTTTTTCTTTGGGCGGGTTAACA]
consensusID : consensus_9205#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAACCCAGGGGACCCCCTTGTTTTTTATGGGGGGAAAGGAAAAACCCCCCCCCCCCTCTTGGGTTTTTTTTTTCCAAAAAGAAAATTCCCCCTTTTCCCCCCGGGGGGGAAAAAAAAAAAAACCCATTTTGGGTCCCCCGGGGGCCCGGGGGCCCCAAACAAACTGGTAAACCCTTTCAAACCCCCCCCAAAAAGGGGTTGGGCAAAAGAAATTTTTTTTTTTCCCCCCCCCGGCTTTTTTTTTTTGGTCCCCAAAAAGGCCCCTAAGAAACCCCAACCGGGGTCCCAAAACCGGAAAATTTTGGGGGGTTTTGGAACCCAGGATTTTTTTCTTTGGGCGGGTTAAA]
[+] EMBL CF329450 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAACCCAGGGGACCCCCTTGTTTTTTATGGGGGGAAAGGAAAAACCCCCCCCCCCCTCTTGGGTTTTTTTTTTCCAAAAAGAAAATTCCCCCTTTTCCCCCCGGGGGGGAAAAAAAAAAAAACCCATTTTGGGTCCCCCGGGGGCCCGGGGGCCCCAAACAAACTGGTAAACCCTTTCAAACCCCCCCCAAAAAGGGGTTGGGCAAAAGAAATTTTTTTTTTTCCCCCCCCCGGCTTTTTTTTTTTGGTCCCCAAAAAGGCCCCTAAGAAACCCCAACCGGGGTCCCAAAACCGGAAAATTTTGGGGGGTTTTGGAACCCAGGATTTTTTTCTTTGGGCGGGTTAAA]
consensusID : consensus_9205#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 394 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAGCCCAGGGAACCCCTTTTTTTTTTAAGGGGGCAAAGGAAACACCAGCCCCCCCGTCTTGGGTTTTTTTTTTCCCAAATGAAAATTTCCTTTTTGCCCCAGCGGGGGGGGAAAAAAAACAACCCATTTTGGTTCCCCCAGGGGCCCGGGGGCCCCAAACAAACTGGTAAACCCCTTCAATCCCCCCTCAAAAAGGAGTAGGGCCAAGGAAATTTTATTTTTTCCCCCCCCCAGCTTGGTTTTTTGAGTCCCCAACCAGGCCCCCAGGAAACCCCAACCGGGGTTCCAAAACGGGAAATTTTTGGGGGCTTTTGGACCCCAGGATTTTTTTC]
[+] EMBL CF276982 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAGCCCAGGGAACCCCTTTTTTTTTTAAGGGGGCAAAGGAAACACCAGCCCCCCCGTCTTGGGTTTTTTTTTTCCCAAATGAAAATTTCCTTTTTGCCCCAGCGGGGGGGGAAAAAAAACAACCCATTTTGGTTCCCCCAGGGGCCCGGGGGCCCCAAACAAACTGGTAAACCCCTTCAATCCCCCCTCAAAAAGGAGTAGGGCCAAGGAAATTTTATTTTTTCCCCCCCCCAGCTTGGTTTTTTGAGTCCCCAACCAGGCCCCCAGGAAACCCCAACCGGGGTTCCAAAACGGGAAATTTTTGGGGGCTTTTGGACCCCAGGATTTTTTTC]
consensusID : consensus_9205#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 364 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAAACCCAGGGGACCCCTTTTTTTTTTAAGGGGGCAAAGGAAACAACACCCCCCCCTTTTTGGGTTTTTTTTTTCCAAAAAGAAAGTTCCCCCTTTGCCCCACCGGGTGCAAAAAAAAAACAACCCATTTTGGTTCCCCCAGGGGCCCGGGGGCCCCAAACAAACTGTTAAACCCCTTCAATCCCCCCCCAAAAAGGGATTGGGCAAAAGAAAACTTTTTTTTTCCCCCCCCGAACTTGTTTTTTTGAGTCCCCAACAAGGCCCCCAGGAAACCCCAACCGGGGTCCCAAAACCGGAA]
[+] EMBL CF276302 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAAACCCAGGGGACCCCTTTTTTTTTTAAGGGGGCAAAGGAAACAACACCCCCCCCTTTTTGGGTTTTTTTTTTCCAAAAAGAAAGTTCCCCCTTTGCCCCACCGGGTGCAAAAAAAAAACAACCCATTTTGGTTCCCCCAGGGGCCCGGGGGCCCCAAACAAACTGTTAAACCCCTTCAATCCCCCCCCAAAAAGGGATTGGGCAAAAGAAAACTTTTTTTTTCCCCCCCCGAACTTGTTTTTTTGAGTCCCCAACAAGGCCCCCAGGAAACCCCAACCGGGGTCCCAAAACCGGAA]
consensusID : consensus_9205#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 354 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAAAAACCCCTGGGAACCCCTTTTTTTTTTAGGGGGCAAAGGGAAAAACCACCCCCCCCTCTTGGGTTTTTTTTTTACCAAAAGAAAATTTCCCCCTTTCCCCCACGGGTGGGAAAAAAAAATAACCCATTTTGGGTCCCCCAGGGGCCCGGGGGCCCCAAACCAACTGGTAAACCCCTTCAATCCCCCCCCAAAAAGGGGTTGGGCCAAAGGAAATTTTTTTTTTTCCCCCCCCAGCTTTTTTTTTTTAGTCCCCAAAAAGGCCCCCAAGAAACCCCAACCGGGGTTCCAAAACCGGAA]
[+] EMBL CF311301 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAAAAACCCCTGGGAACCCCTTTTTTTTTTAGGGGGCAAAGGGAAAAACCACCCCCCCCTCTTGGGTTTTTTTTTTACCAAAAGAAAATTTCCCCCTTTCCCCCACGGGTGGGAAAAAAAAATAACCCATTTTGGGTCCCCCAGGGGCCCGGGGGCCCCAAACCAACTGGTAAACCCCTTCAATCCCCCCCCAAAAAGGGGTTGGGCCAAAGGAAATTTTTTTTTTTCCCCCCCCAGCTTTTTTTTTTTAGTCCCCAAAAAGGCCCCCAAGAAACCCCAACCGGGGTTCCAAAACCGGAA]
consensusID : consensus_9205#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 280 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAACCCATGGAAACCCTTTTTTTTTTAAGGGGGCAAAGGAAAAAACAACCCCCCCATTTTGGGTTTTTTTTTTCCCAAATGAAAATTACCCCTTTTCCCCCGCGGGTGCAAAAAAAAAACAACCCATTTTGGTTCCCCCGGGGGCCCGGGGGCCCCAAACCAACTGTTAAACTCCTTCAAACCCCCCCCAAAAAGGAGTTGGGCAAAAGAAA]
[+] EMBL CF312577 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAACCCATGGAAACCCTTTTTTTTTTAAGGGGGCAAAGGAAAAAACAACCCCCCCATTTTGGGTTTTTTTTTTCCCAAATGAAAATTACCCCTTTTCCCCCGCGGGTGCAAAAAAAAAACAACCCATTTTGGTTCCCCCGGGGGCCCGGGGGCCCCAAACCAACTGTTAAACTCCTTCAAACCCCCCCCAAAAAGGAGTTGGGCAAAAGAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9205#0 TACGTACCGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
consensus_9205#2 --------------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 34
consensus_9205#3 ---------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 39
consensus_9205#5 --------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 40
consensus_9205#1 -------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 47
consensus_9205#4 -------------------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTT 29
*****************************
consensus_9205#0 TTTTTTTTTTTTTTTTTTTTTTTTTGAAAAACCCATGGGATCCCTTTTTTATTTAGGGGG 120
consensus_9205#2 TTTTTTTTTTTTTTTTTTTTTTTTTGAAAAGCCCAGGGAACCCCTTTTTTTTTTAAGGGG 94
consensus_9205#3 TTTTTTTTTTTTTTTTTTTTTTTTGGAAAAACCCAGGGGACCCCTTTTTTTTTTAAGGGG 99
consensus_9205#5 TTTTTTTTTTTTTTTTTTTTTTTTTGAAAAACCCATGGAAACCCTTTTTTTTTTAAGGGG 100
consensus_9205#1 TTTTTTTTTTTTTTTTTTTTTTTTTAAAAAACCCAGGGGACCCCCTTGTTTTTTATGGGG 107
consensus_9205#4 TTTTTTTTTTTTTTTTTTTTTTTGGGAAAAACCCCTGGGAACCCCTTTTTTTTTTAGGGG 89
*********************** **** *** ** * *** ** ** *** ****
consensus_9205#0 GCAAAGGAAACAGCACCCCCCCCATCTTGGGTTTTTTTTTAACAAAAAGAAAGTTACCCC 180
consensus_9205#2 GCAAAGGAAACACCAGCCCCCCCGTCTTGGGTTTTTTTTTTCCCAAATGAAAATTTCCTT 154
consensus_9205#3 GCAAAGGAAACAACACCCCCCCCTTTTTGGGTTTTTTTTTTCCAAAAAGAAAGTTCCCCC 159
consensus_9205#5 GCAAAGGAAAAAACAACCCCCCCATTTTGGGTTTTTTTTTTCCCAAATGAAAATTACCCC 160
consensus_9205#1 GGAAAGGAAAAACCCCCCCCCCCCTCTTGGGTTTTTTTTTTCCAAAAAGAAAATTCCCCC 167
consensus_9205#4 GCAAAGGGAAAAACCACCCCCCCCTCTTGGGTTTTTTTTTTACCAAAAGAAAATTTCCCC 149
* ***** ** * * ******* * ************** * *** **** ** **
consensus_9205#0 TTTTCCCCACCGGGTGCCAAAAAAAATCAACCCATTTTGGTTCCCCCATGGGCCAGGGGG 240
consensus_9205#2 TTTGCCCCAGCGGGGGGGGAAAAAAAACAACCCATTTTGGTTCCCCCAGGGGCCCGGGGG 214
consensus_9205#3 TTTGCCCCACCGGGTGCAAAAAAAAAACAACCCATTTTGGTTCCCCCAGGGGCCCGGGGG 219
consensus_9205#5 TTTTCCCCCGCGGGTGCAAAAAAAAAACAACCCATTTTGGTTCCCCCGGGGGCCCGGGGG 220
consensus_9205#1 TTTTCCCCCCGGGGGGGAAAAAAAAAAAAACCCATTTTGGGTCCCCCGGGGGCCCGGGGG 227
consensus_9205#4 CTTTCCCCCACGGGTGGGAAAAAAAAATAACCCATTTTGGGTCCCCCAGGGGCCCGGGGG 209
** **** *** * ******* ************ ****** ***** *****
consensus_9205#0 CTCCAAACAAACTGGTAAACTCCTTCAATCCCCCCTCAAAAAGGAGTAGGGCAAAGGAAA 300
consensus_9205#2 CCCCAAACAAACTGGTAAACCCCTTCAATCCCCCCTCAAAAAGGAGTAGGGCCAAGGAAA 274
consensus_9205#3 CCCCAAACAAACTGTTAAACCCCTTCAATCCCCCCCCAAAAAGGGATTGGGCAAAAGAAA 279
consensus_9205#5 CCCCAAACCAACTGTTAAACTCCTTCAAACCCCCCCCAAAAAGGAGTTGGGCAAAAGAAA 280
consensus_9205#1 CCCCAAACAAACTGGTAAACCCTTTCAAACCCCCCCCAAAAAGGGGTTGGGCAAAAGAAA 287
consensus_9205#4 CCCCAAACCAACTGGTAAACCCCTTCAATCCCCCCCCAAAAAGGGGTTGGGCCAAAGGAA 269
* ****** ***** ***** * ***** ****** ******** * **** ** * **
consensus_9205#0 TCTCATTTTTTCCCCCCCCGAGCTTGGTTTTTTGAGTCCCCAACAAGGCCCCCAAGAAAC 360
consensus_9205#2 TTTTATTTTTTCCCCCCCCCAGCTTGGTTTTTTGAGTCCCCAACCAGGCCCCCAGGAAAC 334
consensus_9205#3 ACTTTTTTTTTCCCCCCCCGAACTTGTTTTTTTGAGTCCCCAACAAGGCCCCCAGGAAAC 339
consensus_9205#5 ------------------------------------------------------------
consensus_9205#1 TTTTTTTTTTTCCCCCCCCCGGCTTTTTTTTTTTGGTCCCCAAAAAGGCCCCTAAGAAAC 347
consensus_9205#4 ATTTTTTTTTTTCCCCCCCCAGCTTTTTTTTTTTAGTCCCCAAAAAGGCCCCCAAGAAAC 329
consensus_9205#0 CCCAACAGGGGTACCAAAACGGGAAATTTTTGGGGGCTTTTGGAACCCGGGATTTTTTTC 420
consensus_9205#2 CCCAACCGGGGTTCCAAAACGGGAAATTTTTGGGGGCTTTTGGACCCCAGGATTTTTTTC 394
consensus_9205#3 CCCAACCGGGGTCCCAAAACCGGAA----------------------------------- 364
consensus_9205#5 ------------------------------------------------------------
consensus_9205#1 CCCAACCGGGGTCCCAAAACCGGAAAATTTTGGGGGGTTTTGGAACCCAGGATTTTTTTC 407
consensus_9205#4 CCCAACCGGGGTTCCAAAACCGGAA----------------------------------- 354
consensus_9205#0 TTTGGGCGGGTTAACA 436
consensus_9205#2 ----------------
consensus_9205#3 ----------------
consensus_9205#5 ----------------
consensus_9205#1 TTTGGGCGGGTTAAA- 422
consensus_9205#4 ----------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||