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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9230#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 845 fasta sequence
[CGGTCTACTAGACTCACACACTAGCTTTAG-TTAGCTAAAAGAAGAAAAAGAAAAGAGAGGCACAATAATAGGTTAGGCATGGCGGA-CAGCTGGGCGGCGTGGGCAG-CCGCAGCTAAGCCTGAGCAGCTGCAGCTCCTTCCTTTCCATCTCCAGCGCCGGTACCAGCGNCGCCGATGGTGCTCCCCATCTATCCCTCGGCGTGGGCGGCGC--AGGAG-CTGGATCTGCTGCTG-AGGTGGGCATAGGCGGTGGCGGTNGCGGCGGCGGCGACGAGGAAGAGGAGGAGCGCAAGACCATCCGGATGATGAAGAACAGGGAGTCGGCGCTGCGTTCCAGGGCAAGGAAGAGGGCGTATGTGCAGGAGCTGGAGAAGGAAGTTCGCCGGCTGGTGAATGAGAATCTCAAGCTCAAGAGGCAC-TGCAAACAACTTAAGACGGAGATGGCTGCTCTGATCCAGCAGCCTACCAACAAGCAGAGTTCCCACCGAAGAAGCTCATCCACTTGATCAGAACGCAGCAGCTTAAGCCTTTAATTAATTAAGCATAGGCAAGGTAGCGGGCAGCCATTGGATTGGGGACCATTATTTAATTGGGTTGGCTGTCCAGCTCCAGCAAGAGTCTCTAGCAAGTAACAACAACTCACTCTGATCCGCCGGCTTGGCTTTCCATGCATTCCGGTAGTACGTAAGTACTCTATTTTGTTACTGTGTCGATCATCCGCTACACATGGATGCATACATGCATGCTTAATTGTTTGTGTCACCGGCTAACTTTTGCATACCCTTGTTTGCTTGCTTGCTGCAAGACCCAAATTAATATAAATTGTATGAGACTCGGAAAAAAAAAAAA]
[+] EMBL C73649 [CGGTCTACTAGACTCACACACTAGCTTTAG TTAGCTAAAAGAAGAAAAAGAAAAGAGAGGCACAATAATAGGTTAGGCATGGCGGA CAGCTGGGCGGCGTGGGCAG CCGCAGCTAAGCCTGAGCAGCTGCAGCTCCTTCCTTTCCATCTCCAGCGCCGGTACCAGCGNCGCCGATGGTGCTCCCCATCTATCCCTCGGCGTGGGCGGCGC AGGAGNCTGGATCTGCTGCTG AGGTGGGCATAGGCGGTGGCGGTNGCGGCGGCGGCGACGAGGAAGAGGAGGAGCGCAAGACCATCCGGATGATGAAGAACAGGGAGTCGGCG TTCGTTCCAGGGCAA ]
[+] EMBL AK061086 [ GTCTACTAGACTCACACACTAGCTTTAGCTTAGCTAAAAGAAGAAAAAGAAAAGAGAGGCACAATAATAGGTTAGGCATGGCGGAGCAGCTGGGCGGCGTGGGCAGCCCGCAGCTAAGCCTGAGCAGCTGCAGCTCCTTCCTTTCCATCTCCAGCGCCGGTACTAGCGCCGCCGATGGTGCTCCCCATCTATCCCTCGGCGTGGGCGGCGCCGAGGAG CTGGATCTGCTGCTGCAGGTGGGCATAGGCGGTGGCGGTGGCGGCGGCGGCGACGAGGAAGAGGAGGAGCGCAAGACCATCCGGATGATGAAGAACAGGGAGTCGGCGCTGCGCTCCAGGGCAAGGAAGAGGGCGTATGTGCAGGAGCTGGAGAAGGAAGTTCGCCGGCTGGTGAATGAGAATCTCAAGCTCAAGAGGCAC TGCAAACAACTTAAGACGGAGATGGCTGCTCTGATCCAGCAGCCTACCAACAAGCAGAGTTCCCACCGAAGAAGCTCATCCACTTGATCAGAACGCAGCAGCTTAAGCCTTTAATTAATTAAGCATAGGCAAGGTAGCGGGCAGCCATTGGATTGGGGACCATTATTTAATTGGGTTGGCTGTCCAGCTCCAGCAAGAGTCTCTAGCAAGTAACAACAACTCACTCTGATCCGCCGGCTTGGCTTTCCATGCATTCCGGTAGTACGTAAGTACTCTATTTTGTTACTGTGTCGATCATCCGCTACACATGGATGCATACATGCATGCTTAATTGTTTGTGTCACCGGCTAACTTTTGCATACCCTTGTTTGCTTGCTTGCTGCAAGACCCAAATTAATATAAATTGTATGAGACTCGG ]
[+] EMBL CA764933 [ AGGGGAGGAGCGCAAGACCCTCCGNATGATGAAGAACAGGGAGTCGGCGCTGCGTTCCAGGGCAAGGAAGAGGGCGTATGTGCANGAGCTGGAGAAGGAAGTTCGCCGGCTGGTGAATGAGAATCTCAAGCTCAAGAGGCACGTGCAAACAACTTAAGACGGAGATGGCTGCTCTGATCCAGCAGCCTACCAACAAGCAGAGTTCCCACCGATGAAGCTCATCCACTTGATCAGAACGCAGCAGCTTAAGCCTTTAATTAATTAAGCATAGGCAAGGTAGCGGGCAGNCATTGGATTGGGGACCATTATTTAATTGGGTTGGCTGTCCAGCTCCAGCAAGAGTCTCTAGCAAGTAACAACAACTCACTCTGATCCGCCAGCTTGGCTTTCCATGCATTCCGGTAGTACGTAAGTACTCTATTTTGTTACTGTGTCGATCATCCGCTACACATGGATGCATACATGCATGCTTAATTGTTTGTGTCACCGGCTAACTTTTGCATACCCTTGTTTGCTTGC C GCAAGACCCAAATTAATATAAATTGTATGAGAC ]
[+] EMBL C99454 [ GAGAATCTCAAGCTCAAGAGGCAC TGCAAACAACTTAAGACGGAGATGGCTGCTCTGATCCAGCAGCCTACCAACAAGCAGAGTTCCCACCGAAGAAGCTCATCCACTTGATCAGAACGCAGCAGCTTAAGCCTTTAATTAATTAAGCATAGGCAAGGTAGCGGGCAGCCATTGGATTGGGGACCATTATTTAATTGGGTTGGCTGTCCAGCTCCAGCAAGAGTCTCTAGCAAGTAACAACAACTCACTCTGATCCGCCGGCTTGGCTTTCCATGCATTCCGGTAGTACGTAAGTACTCTATTTTGTTACTGTGTCGATCATCCGCTACACATGGATGCATACATGCATGCTTAATTGTTTGTGTCACCGGCTAACTTTTGCATACCCTTGTTTGCTTGCTTGCTGCAAGACCCAAATTAATATAAATTGTATGAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_9230#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence
[CTAATAAGTCGATTCATCACTTTACATTTCCAATCCATCTTTTATGTATATATATGTATGTGCATAGAATCCTTTGATTTTACTACAGGTATATTGTAATAATAATGCACTATATCCTATGCAGCTTAAGACGGAGATGGCTGCTCTGATCCAGCAGCCTACCAACAAGCAGAGTTCCCACCGAAGAAGCTCATCCACTTGATCAGAACGCAGCAGCTTAAGCCTTTAATTAATTAAGCATAGGCAAGGTAGCGGGCAGCCATTGGATTGGGGACCATTATTTAATTGGGTTGGCTGTCCAGCTCCAGCAAGAGTCTCTAGCAAGTAACAACAACTCACTCTGATCCGCCGGCTTGGCTTTCCATGCATTCCGGTAGTACGTAAGTACTCTATTTTGTTACTGTGTCGATCATCCGCTACACATGGATGCATACATGCATGCTTAATTGTTTGTGTCACCGGCTAACTTTTGCATACCCTTGTTTGCTTGCTTGCTGCAAGACCCAAATTAATATAAATTGTATGAGACTAAAAAAA]
[-] EMBL CF332860 [CTAATAAGTCGATTCATCACTTTACATTTCCAATCCATCTTTTATGTATATATATGTATGTGCATAGAATCCTTTGATTTTACTACAGGTATATTGTAATAATAATGCACTATATCCTATGCAGCTTAAGACGGAGATGGCTGCTCTGATCCAGCAGCCTACCAACAAGCAGAGTTCCCACCGAAGAAGCTCATCCACTTGATCAGAACGCAGCAGCTTAAGCCTTTAATTAATTAAGCATAGGCAAGGTAGCGGGCAGCCATTGGATTGGGGACCATTATTTAATTGGGTTGGCTGTCCAGCTCCAGCAAGAGTCTCTAGCAAGTAACAACAACTCACTCTGATCCGCCGGCTTGGCTTTCCATGCATTCCGGTAGTACGTAAGTACTCTATTTTGTTACTGTGTCGATCATCCGCTACACATGGATGCATACATGCATGCTTAATTGTTTGTGTCACCGGCTAACTTTTGCATACCCTTGTTTGCTTGCTTGCTGCAAGACCCAAATTAATATAAATTGTATGAGACTAAAAAAA]
consensusID : consensus_9230#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 517 fasta sequence
[AGTCTACTAGACTACACACTAGCCTTAGCTTAGCTAAAAGAAGAAAAAGAAAAGAGAGGCACAATAATAGGTTAGGCATGGCGGAGCAGCTGGGCGGCGTGGGCAGCCCGCAGCTAAGCCTGAGCAGCTGCAGCTCCTTCCTTTCCATCTCCAGCGCCGGTACCAGCGCCGCCGATGGTGCTCCCCATCTATCCCTCGGCGTGGGCGGCGCCGAGGAGCTGGATCTGCTGCTGCAGGTGGGCATAGGCGGTGGCGGTGGCGGCGGCGGCGACGAGGAAGAGGAGGAGCGCAAGACCATCCGGATGATGAAGAACAGGNGAGTCGGCGCTGCGCTCCAGGGCAAGGAGGAGGGTAAGAACCTCTAATCCATTTCCTCATACTATCTAGTATAGTACTAGCTACTCTATTAATTAATCTCTCGGATGGATAGATGGAGTAGTATTTTGGTTCCACACTAGTACTAGTTAGCTAATTGCATGAGCTTAATTATGTGCGCGGATGGATGTATAGGCGTATG]
[+] EMBL CF332859 [AGTCTACTAGACTACACACTAGCCTTAGCTTAGCTAAAAGAAGAAAAAGAAAAGAGAGGCACAATAATAGGTTAGGCATGGCGGAGCAGCTGGGCGGCGTGGGCAGCCCGCAGCTAAGCCTGAGCAGCTGCAGCTCCTTCCTTTCCATCTCCAGCGCCGGTACCAGCGCCGCCGATGGTGCTCCCCATCTATCCCTCGGCGTGGGCGGCGCCGAGGAGCTGGATCTGCTGCTGCAGGTGGGCATAGGCGGTGGCGGTGGCGGCGGCGGCGACGAGGAAGAGGAGGAGCGCAAGACCATCCGGATGATGAAGAACAGGNGAGTCGGCGCTGCGCTCCAGGGCAAGGAGGAGGGTAAGAACCTCTAATCCATTTCCTCATACTATCTAGTATAGTACTAGCTACTCTATTAATTAATCTCTCGGATGGATAGATGGAGTAGTATTTTGGTTCCACACTAGTACTAGTTAGCTAATTGCATGAGCTTAATTATGTGCGCGGATGGATGTATAGGCGTATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9230#0 CGGTCTACTAGACTCACACACTAGCTTTAGTTAGCTAAAAGAAGAAAAAGAAAAGAGAGG 60
consensus_9230#1 ------------------------------------------------------------
consensus_9230#2 ------------------------------------------------------------
consensus_9230#0 CACAATAATAGGTTAGGCATGGCGGACAGCTGGGCGGCGTGGGCAGCCGCAGCTAAGCCT 120
consensus_9230#1 ------------------------------------------------------------
consensus_9230#2 ------------------------------------------------------------
consensus_9230#0 GAGCAGCTGCAGCTCCTTCCTTTCCATCTCCAGCGCCGGTACCAGCGNCGCCGATGGTGC 180
consensus_9230#1 ------------------------------------------------------------
consensus_9230#2 ------------------------------------------------------------
consensus_9230#0 TCCCCATCTATCCCTCGGCGTGGGCGGCGCAGGAGCTGGATCTGCTGCTGAGGTGGGCAT 240
consensus_9230#1 ------------------------------------------------------------
consensus_9230#2 ------------------------------------------------------------
consensus_9230#0 AGGCGGTGGCGGTNGCGGCGGCGGCGACGAGGAAGAGGAGGAGCGCAAGACCATCCGGAT 300
consensus_9230#1 --------------------------------------------------CTAATAAGTC 10
consensus_9230#2 --------------------------------------------------------AGTC 4
*
consensus_9230#0 GATGA-AGAACAGGGAGTCGGCGCTGCGTTCCAGGGCAAGGAAGAGGGCGTATGTGCAGG 359
consensus_9230#1 GATTC-ATCACTTTACATTTCCAATCCATCTTT---TATGTATATATATGTATGTGCA-- 64
consensus_9230#2 TACTAGACTACACACTAGCCTTAGCTTAGCTAAAA-GAAGAAAAAGAAAAGAGAGGCACA 63
* * ** * * * * ***
consensus_9230#0 AGCTGGAGAAGGAAGTTCGCCGGCTGGTGAATGAGAATCTCAAGCTCAAGAGGCACTGCA 419
consensus_9230#1 --TAGAATCCTTTGATTTTACTACAGGTATATTGTAATAATAA---TGCACTATATCCTA 119
consensus_9230#2 ATAATAGGTTAGGCATGGCGGAGCAGCTGGGCGGCGTGGGCAGCC-CGCAGCTAAGCCTG 122
* * * * * *
consensus_9230#0 AACAACTTAAGACGGAGATGGCTGCTCTGATCCAGCAGCC-TACCAACAA-GCAGAGTTC 477
consensus_9230#1 TGCAGCTTAAGACGGAGATGGCTGCTCTGATCCAGCAGCC-TACCAACAA-GCAGAGTTC 177
consensus_9230#2 AGCAGCTGCAGCT---CCTTCCTTTCCATCTCCAGCGCCGGTACCAGCGCCGCCGATGGT 179
** ** ** * ** * ****** * ***** * ** **
consensus_9230#0 CCACCGAAGAAGCTCATCCACTTGATCAGAACGCAGCAGCTTAAGCCTTTAAT-TAATTA 536
consensus_9230#1 CCACCGAAGAAGCTCATCCACTTGATCAGAACGCAGCAGCTTAAGCCTTTAAT-TAATTA 236
consensus_9230#2 GCTCCCCATCTATCCCTCGGCGTGGGCGGCGCCGAGGAGCTGGATCTGCTGCTGCAGGTG 239
* ** * * ** * ** * * * ** **** * * * * * *
consensus_9230#0 AGCATAGGCAAGGTAGCGGGCAGCCATTGGATTGGGGACCATTATTTAATTGGGTTGGCT 596
consensus_9230#1 AGCATAGGCAAGGTAGCGGGCAGCCATTGGATTGGGGACCATTATTTAATTGGGTTGGCT 296
consensus_9230#2 GGCATAGGCGGTGGCGGTGGCGGCGGCGGCGACGAGGAAGAGGA---GGAGCGCAAGACC 296
******** * * *** ** * * *** * * * * *
consensus_9230#0 GTCCAGCTCCAGCAAGAGTCTCTAGCAAGTAACAACAACTCACTCTGATCCGCCGGCTTG 656
consensus_9230#1 GTCCAGCTCCAGCAAGAGTCTCTAGCAAGTAACAACAACTCACTCTGATCCGCCGGCTTG 356
consensus_9230#2 ATCCGGATGATGAAGAACAGGNGAGTCGGCG-CTGCGCTCCAGGGCAAGGAGGAGGGTAA 355
*** * * * * * ** * * * ** * * ** *
consensus_9230#0 G--CTTTCCATGCATTCCG--GTAGTACGTAAGTACTCTATTTTGTTACTGTGTCGATCA 712
consensus_9230#1 G--CTTTCCATGCATTCCG--GTAGTACGTAAGTACTCTATTTTGTTACTGTGTCGATCA 412
consensus_9230#2 GAACCTCTAATCCATTTCCTCATACTATCTA-GTATAGTACTA-GCTACTCTATTAATTA 413
* * * ** **** * ** ** ** *** ** * * **** * * ** *
consensus_9230#0 TCCGCTACACATGGATGCATACAT--GCATGCTTAATTGTTTGTGTCACCGGCTAACTT- 769
consensus_9230#1 TCCGCTACACATGGATGCATACAT--GCATGCTTAATTGTTTGTGTCACCGGCTAACTT- 469
consensus_9230#2 ATCTCT-CGGATGGATAGATGGAGTAGTATTTTGGTTCCACACTAGTACTAGTTAGCTAA 472
* ** * ****** ** * * ** * * * ** * ** **
consensus_9230#0 TTGCATACCCTTGTTTGCTTGCTTGCTGCAAGACCCAAATTAATATAAATTGTATGAGAC 829
consensus_9230#1 TTGCATACCCTTGTTTGCTTGCTTGCTGCAAGACCCAAATTAATATAAATTGTATGAGAC 529
consensus_9230#2 TTGCATGAGCTTAATTATGTGC--GCGGATGGATGTATAGGCGTATG------------- 517
****** *** ** *** ** * ** * * ***
consensus_9230#0 TCGGAAAAAAAAAAAA 845
consensus_9230#1 TAAAAAAA-------- 537
consensus_9230#2 ----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||