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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9275#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1321 fasta sequence
[CGGAGGGCGGCGGCGGCAGCAGCAGCAAACCGCCGCTTTGGCAGAAGAGGAATCCGGGATGGCCGGCGGCGGCGGCGGCGGGAATCGCCTGGACCTCCCCGTGGTGGACCTCGCGTCCTCCGACCCCCGAGCCGCCGCCGAGTCCATCCGAAAGGCGTGCGTGGAGTCCGGATTCTTCTACGTGGTCAACCATGGGGTGGAGGAGGGATTGCTGAAGAGGTTGTTCGCGGAGAGCTCGAAGTTCTTCGAGCTGCCGATGGAGGAGAAGATAGCGCTGCGGAGGAACAGCAACCACCGGGGATACACCCCGCCCTACGCCGAGAAGCTCGATCCCTCGTCCAAATTCGAAGGAGACCTCAAGGAAAGTTTCTATATTGGGCCTATTGGAGATGAAGGTTTGCAGAATGATGCTAACCAGTGGCCTTCTGAAGAGCGCTTACCAAGTCGGAGGGAGACAATTAAGATGTACCATGCAAGTGCACTGTCTACTGGCAAAAGGATACTCTCTCTAATCGCTCTGAGTTTGAATCTTGACGCTGAATTCTTTGAGAACATTGGTGCCTTCAGCTGCCCATCAGCATTTCTTCGATTATTGCACTACCCAGGTGAAGTAGACGACTCTGATGATGGCAATTATGGTGCATCAGCTCACTCTGATTATGGAATGATAACCCTCCTAGCAACAGACGGCACTCCTGGGCTACAGATATGCAGGGAAAAGAATAGGAATCCCCAGCTCTGGGAAGATGTTCATCACATTGATGGGGCCCTGATTGTTAACATTGGCGATTTGCTAGAAAGGTGGACGAATTGTATTTACAGGTCTACAGTGCACCGTGTTGTTGCAGTTGGTAAAGAGCGATATTCTGCGGCTTTTTTTCTTGACCCAAACCCTGATTTAGTGGTTCAGTGTTTGGAAAGCTGTTGCAGCGAGTCATGCCCACCGAGGTTCTCACCTATAAAGAGTGGCGACTATTTGAAAGAGCGATTGAGCGCTACATACAAATAGTCCTAT-GCTTTTTCATGTGTAAAAGGAGGCTAACATGTGCTACACGGCCGGCCATCGTTCTCCATTGTCCATTTTTCTTCTGCGTTTA---GACATCACAGTAGTCCAGAAGGTTGTTTGTGTTGTTTTACTGTAACGCTGTAAAGAAAAAGTCTGCAGTGATGTGCTATGCTTGATTTCTCTCTCCACTGCTCGACACCAACCTGAACTTTTTATTGTTTGTCGTTC-AAAAAAAAACTTTTTATTGTCACCTGCGAGCTGACTGGTGTTTGGACTAGTATTCTTGTTGACTTGGTAAAGAAACTCCAGTTTGAT]
[+] EMBL AK069466 [CGGAGGGCGGCGGCGGCAGCAGCAGCAAACCGCCGCTTTGGCAGAAGAGGAATCCGGGATGGCCGGCGGCGGCGGCGGCGGGAATCGCCTGGACCTCCCCGTGGTGGACCTCGCGTCCTCCGACCCCCGAGCCGCCGCCGAGTCCATCCGAAAGGCGTGCGTGGAGTCCGGATTCTTCTACGTGGTCAACCATGGGGTGGAGGAGGGATTGCTGAAGAGGTTGTTCGCGGAGAGCTCGAAGTTCTTCGAGCTGCCGATGGAGGAGAAGATAGCGCTGCGGAGGAACAGCAACCACCGGGGATACACCCCGCCCTACGCCGAGAAGCTCGATCCCTCGTCCAAATTCGAAGGAGACCTCAAGGAAAGTTTCTATATTGGGCCTATTGGAGATGAAGGTTTGCAGAATGATGCTAACCAGTGGCCTTCTGAAGAGCGCTTACCAAGTCGGAGGGAGACAATTAAGATGTACCATGCAAGTGCACTGTCTACTGGCAAAAGGATACTCTCTCTAATCGCTCTGAGTTTGAATCTTGACGCTGAATTCTTTGAGAACATTGGTGCCTTCAGCTGCCCATCAGCATTTCTTCGATTATTGCACTACCCAGGTGAAGTAGACGACTCTGATGATGGCAATTATGGTGCATCAGCTCACTCTGATTATGGAATGATAACCCTCCTAGCAACAGACGGCACTCCTGGGCTACAGATATGCAGGGAAAAGAATAGGAATCCCCAGCTCTGGGAAGATGTTCATCACATTGATGGGGCCCTGATTGTTAACATTGGCGATTTGCTAGAAAGGTGGACGAATTGTATTTACAGGTCTACAGTGCACCGTGTTGTTGCAGTTGGTAAAGAGCGATATTCTGCGGCTTTTTTTCTTGACCCAAACCCTGATTTAGTGGTTCAGTGTTTGGAAAGCTGTTGCAGCGAGTCATGCCCACCGAGGTTCTCACCTATAAAGAGTGGCGACTATTTGAAAGAGCGATTGAGCGCTACATACAAATAGTCCTAT GCTTTTTCATGTGTAAAAGGAGGCTAACATGTGCTACACGGCCGGCCATCGTTCTCCATTGTCCATTTTTCTTCTGCGTTTA GACATCACAGTAGTCCAGAAGGTTGTTTGTGTTGTTTTACTGTAACGCTGTAAAGAAAAAGTCTGCAGTGATGTGCTATGCTTGATTTCTCTCTCCACTGCTCGACACCAACCTGAACTTTTTATTGTTTGTCGTTCAAAAAAAAAACTTTTTATTGTCACCTGCGAGCTGACTGGTGTTTGGACTAGTATTCTTGTTGACTTGGTAAAGAAACTCCAGTTTGAT]
[+] EMBL AK104871 [ AGCAAACCGCCGCTTTGGCAGAAGAGGAATCCGGGATGGCCGGCGGCGGCGGCGGCGGGAATCGCCTGGACCTCCCCGTGGTGGACCTCGCGTCCTCCGACCCCCGAGCCGCCGCCGAGTCCATCCGAAAGGCGTGCGTGGAGTCCGGATTCTTCTACGTGGTCAACCATGGGGTGGAGGAGGGATTGCTGAAGAGGTTGTTCGCGGAGAGCTCGAAGTTCTTCGAGCTGCCGATGGAGGAGAAGATAGCGCTGCGGAGGAACAGCAACCACCGGGGATACACCCCGCCCTACGCCGAGAAGCTCGATCCCTCGTCCAAATTCGAAGGAGACCTCAAGGAAAGTTTCTATATTGGGCCTATTGGAGATGAAGGTTTGCAGAATGATGCTAACCAGTGGCCTTCTGAAGAGCGCTTACCAAGTCGGAGGGAAACAATTAAGATGTACCATGCAAGTGCACTGTCTACTGGCAAAAGGATACTCTCTCTAATCGCTCTGAGTTTGAATCTTGACGCTGAATTCTTTGAGAACATTGGTGCCTTCAGCTGCCCATCAGCATTTCTTCGATTATTGCACTACCCAGGTGAAGTAGACGACTCTGATGATGGCAATTATGGTGCATCAGCTCACTCTGATTATGGAATGATAACCCTCCTAGCAACAGACGGCACTCCTGGGCTACAGATATGCAGGGAAAAGAATAGGAATCCCCAGCTCTGGGAAGATGTTCATCACATTGATGGGGCCCTGATTGTTAACATTGGCGATTTGCTAGAAAGGTGGACGAATTGTATTTACAGGTCTACAGTGCACCGTGTTGTTGCAGTTGGTAAAGAGCGATATTCTGCGGCTTTTTTTCTTGACCCAAACCCTGATTTAGTGGTTCAGTGTTTGGAAAGCTGTTGCAGCGAGTCATGCCCACCGAGGTTCTCACCTATAAAGAGTGGCGACTATTTGAAAGAGCGATTGAGCGCTACATACAAATAGTCCTAT GCTTTTTCATGTGTAAAAGGAGGCTAACATGTGCTACACGGCCGGCCATCGTTCTCCATTGTCCATTTTTCTTCTGCGTTTA GACATCACAGTAGTCCAGAAGGTTGTTTGTGTTGTTTTACTGTAACGCTGTAAAGAAAAAGTCTGCAGTGATGTGCTATGCTTGATTTCTCTCTCCACTGCTCGACACCAACCTGAACTTTTTATTGTTTGTCGTTC AAAAAAAAACTTTTTATTGTCACCTGCGAGCTGACTGGTGTTTGGACTAGTATTCTTGTTGACTTGGTAAAGAAACTCC ]
[+] EMBL BI800901 [ GCTACAGATAT CAAGGAAAAGGATAGGAATCCCCAGCTCTGGGAAGATGTTCATCACATTGAT GGGCCCTGATTGTTAACATTGGCGATTTGCTAGAAAGGTGGACGAATTGTATTTACAGGTCTACAGTGCACCGTGTTGTT CAGTTGGTAAAGAGCGATATTCTGCGGCTTTTTTTCTTGACCC AACCCTGATTTAGTGGTTCAGTGTTTGAAAAGCTGTTGCAGCGAGTCATGCCCACCGAGGTTCTTACCTATAAAGAGTGGCGACTATTTGAAAGAGCGATTGAGTGTTACATACAAATAGTCCTAT GCTTTTACATGTGT AAGGAGGC AACATGTGCTACACGGCCGGCCATCGTTCTCCGTTGTCCATTTTTCTTCTGCGTTTAGACGACATCACAGTAGTCCAGAAGGTTTTTTGTGTTGTTTTACTGTAACGCTGTAAAGAAAAAGTCT ATG CCTATGCTTGATTAATCTCTCCACTGCTCGACACC ACCTGAACTTTTTATTGTTTGTCGTTC CAAAAAAAATTTTTTATCGTCAaaaa ]
[+] EMBL AA749735 [ GTGCACCGTGTTGTTGCAGTTGGTAAAGAGCGATATTCTGC GCTTTTTTTCTTGACCCAAACCCTGATTTAGTGGTTCAGTGTTTGAAAAGCTGTTGCA NG GTCATGCCCACCGAGGTTCTTACCTATAAAGAGTGGCGACTATTTGAAAGAGCGATTGAGTGTTACATACAAATAGTCCTATAGCTTTTACATGTGT ]
consensusID : consensus_9275#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 309 fasta sequence
[TATGCTTTTACATGTGTAAGGAGGCAACATGTGCTACACGGCCGGCCATCGTTCTCCGTTGTCCATTTTTCTTCTGCGTTTAGACGACATCACAGTAGTCCAGAAGGTTTTTTGTGTTGTTTTACGTGTAACGCTGTAAAGAAAAAGTCTATGCCTATGCTTGATTAATCTCTCCACTGCTCGACACCACCTGAACTTTTTATTGTTTGTCGTTCAAAAAAAATTTTTTATCGTCACCTGCGAGCTGACTGTGGTGTTTGGACTAGTATTCTTGTTGACTTGGTAAAGAAACTCCAGTTTGATCCAAAA]
[+] EMBL BI800235 [TATGCTTTTACATGTGTAAGGAGGCAACATGTGCTACACGGCCGGCCATCGTTCTCCGTTGTCCATTTTTCTTCTGCGTTTAGACGACATCACAGTAGTCCAGAAGGTTTTTTGTGTTGTTTTACGTGTAACGCTGTAAAGAAAAAGTCTATGCCTATGCTTGATTAATCTCTCCACTGCTCGACACCACCTGAACTTTTTATTGTTTGTCGTTCAAAAAAAATTTTTTATCGTCACCTGCGAGCTGACTGTGGTGTTTGGACTAGTATTCTTGTTGACTTGGTAAAGAAACTCCAGTTTGATCCAAAA]
consensusID : consensus_9275#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 169 fasta sequence
[GTAAAGAGCGATATTCTGCNNCTTTTTTTCTTGACCCAAACCCTGATTTAGTGGTTCAGTGTTTGAAAAGCTNTTGCAGCNNGTCATGCCCACCGAGGTTCTTACCTATAAAGAGNGGCNACTATTTGAAAGAGCGATTGAGNNTTACATACAAATAGTCCTATNCTTT]
[+] EMBL AA749731 [GTAAAGAGCGATATTCTGCNNCTTTTTTTCTTGACCCAAACCCTGATTTAGTGGTTCAGTGTTTGAAAAGCTNTTGCAGCNNGTCATGCCCACCGAGGTTCTTACCTATAAAGAGNGGCNACTATTTGAAAGAGCGATTGAGNNTTACATACAAATAGTCCTATNCTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9275#0 CGGAGGGCGGCGGCGGCAGCAGCAGCAAACCGCCGCTTTGGCAGAAGAGGAATCCGGGAT 60
consensus_9275#1 ------------------------------------------------------------
consensus_9275#2 ------------------------------------------------------------
consensus_9275#0 GGCCGGCGGCGGCGGCGGCGGGAATCGCCTGGACCTCCCCGTGGTGGACCTCGCGTCCTC 120
consensus_9275#1 ------------------------------------------------------------
consensus_9275#2 ------------------------------------------------------------
consensus_9275#0 CGACCCCCGAGCCGCCGCCGAGTCCATCCGAAAGGCGTGCGTGGAGTCCGGATTCTTCTA 180
consensus_9275#1 ------------------------------------------------------------
consensus_9275#2 ------------------------------------------------------------
consensus_9275#0 CGTGGTCAACCATGGGGTGGAGGAGGGATTGCTGAAGAGGTTGTTCGCGGAGAGCTCGAA 240
consensus_9275#1 ------------------------------------------------------------
consensus_9275#2 ------------------------------------------------------------
consensus_9275#0 GTTCTTCGAGCTGCCGATGGAGGAGAAGATAGCGCTGCGGAGGAACAGCAACCACCGGGG 300
consensus_9275#1 ------------------------------------------------------------
consensus_9275#2 ------------------------------------------------------------
consensus_9275#0 ATACACCCCGCCCTACGCCGAGAAGCTCGATCCCTCGTCCAAATTCGAAGGAGACCTCAA 360
consensus_9275#1 ------------------------------------------------------------
consensus_9275#2 ------------------------------------------------------------
consensus_9275#0 GGAAAGTTTCTATATTGGGCCTATTGGAGATGAAGGTTTGCAGAATGATGCTAACCAGTG 420
consensus_9275#1 ------------------------------------------------------------
consensus_9275#2 ------------------------------------------------------------
consensus_9275#0 GCCTTCTGAAGAGCGCTTACCAAGTCGGAGGGAGACAATTAAGATGTACCATGCAAGTGC 480
consensus_9275#1 ------------------------------------------------------------
consensus_9275#2 ------------------------------------------------------------
consensus_9275#0 ACTGTCTACTGGCAAAAGGATACTCTCTCTAATCGCTCTGAGTTTGAATCTTGACGCTGA 540
consensus_9275#1 ------------------------------------------------------------
consensus_9275#2 ------------------------------------------------------------
consensus_9275#0 ATTCTTTGAGAACATTGGTGCCTTCAGCTGCCCATCAGCATTTCTTCGATTATTGCACTA 600
consensus_9275#1 ------------------------------------------------------------
consensus_9275#2 ------------------------------------------------------------
consensus_9275#0 CCCAGGTGAAGTAGACGACTCTGATGATGGCAATTATGGTGCATCAGCTCACTCTGATTA 660
consensus_9275#1 ------------------------------------------------------------
consensus_9275#2 ------------------------------------------------------------
consensus_9275#0 TGGAATGATAACCCTCCTAGCAACAGACGGCACTCCTGGGCTACAGATATGCAGGGAAAA 720
consensus_9275#1 ------------------------------------------------------------
consensus_9275#2 ------------------------------------------------------------
consensus_9275#0 GAATAGGAATCCCCAGCTCTGGGAAGATGTTCATCACATTGATGGGGCCCTGATTGTTAA 780
consensus_9275#1 ------------------------------------------------------------
consensus_9275#2 ------------------------------------------------------------
consensus_9275#0 CATTGGCGATTTGCTAGAAAGGTGGACGAATTGTATTTACAGGTCTACAGTGCACCGTGT 840
consensus_9275#1 ------------------------------------------------------------
consensus_9275#2 ------------------------------------------------------------
consensus_9275#0 TGTTGCAGTTGGTAAAGAGCGATATTCTGCGGCTTTTTTTCTTGACCCAAACCCTGATTT 900
consensus_9275#1 ------------------------------------------------------------
consensus_9275#2 ------------------------------------------------------------
consensus_9275#0 AGTGGTTCAGTGTTTGGAAAGCTGTTGCAGCGAGTCATGCCCACCGAGGTTCTCACCTAT 960
consensus_9275#1 ------------------------------------------------------------
consensus_9275#2 ------------------------------------------------------------
consensus_9275#0 AAAGAGTGGCGACTATTTGAAAGAGCGATTGAGCGCTACATACAAATAGTCCTATGCTTT 1020
consensus_9275#1 ----------------------------------------------------TATGCTTT 8
consensus_9275#2 ------------------------------------------------------------
consensus_9275#0 TTCATGTGTAAAAGGAGGCTAACATGTGCTACACGGCCGGCCATCGTTCTCCATTGTCCA 1080
consensus_9275#1 TACATGTGTAA--GGAGGC-AACATGTGCTACACGGCCGGCCATCGTTCTCCGTTGTCCA 65
consensus_9275#2 ------------------------------------------------------------
consensus_9275#0 TTTTTCTTCTGCGTTTAGAC---ATCACAGTAGTCCAGAAGGTTGTTTGTGTTGTTTTAC 1137
consensus_9275#1 TTTTTCTTCTGCGTTTAGACGACATCACAGTAGTCCAGAAGGTTTTTTGTGTTGTTTTAC 125
consensus_9275#2 ------------------------------------------------------------
consensus_9275#0 -TGTAACGCTGTAAAGAAAAAGTCTGCAGTGATGTGCTATGCTTGATTTCTCTCTCCACT 1196
consensus_9275#1 GTGTAACGCTGTAAAGAAAAAGTCT------ATGC-CTATGCTTGATTAATCTCTCCACT 178
consensus_9275#2 GTAAAGAGCGATATTCTGCNNCTTTTTTTCTTGACCCAAACCCTGATTTAGTGGTTCAGT 60
* * ** ** * * * * * ***** * ** *
consensus_9275#0 GCTCGACACCAACCTGAACTTTTTATTGTTTGTCGTTCAAAAAAAAACTTTTTATTGTCA 1256
consensus_9275#1 GCTCGACACCA-CCTGAACTTTTTATTGTTTGTCGTTCAAAAAAAA-TTTTTTATCGTCA 236
consensus_9275#2 GTTTGA---------AAAGCTNTTGCAGCNNGTCATGCCCACCGAGGTTCTTACCTATAA 111
* * ** ** * ** * *** * * * * * ** * *
consensus_9275#0 CCTGCGAGCTGACTG--GTGTTTGGACTAGTATTCTTGTTGACTTGGTAAAGAAACTCCA 1314
consensus_9275#1 CCTGCGAGCTGACTGTGGTGTTTGGACTAGTATTCTTGTTGACTTGGTAAAGAAACTCCA 296
consensus_9275#2 A--GAGNGGCNACTA-----TTTGAA--AGAGCGATTGAGNNTTACATACAAATAGTCCT 162
* * * *** **** * ** *** * ** * * * ***
consensus_9275#0 GTTTGAT------ 1321
consensus_9275#1 GTTTGATCCAAAA 309
consensus_9275#2 ATNCTTT------ 169
* *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||