cluster # 9292

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Oryza sativa
cluster # 9292 cluster # 9292 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9292#0 length = 1025 sequences # 4

consensus_9292#1 length = 441 sequences # 1
consensus_9292#2 length = 190 sequences # 1

consensusID : consensus_9292#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1025
fasta sequence

                              [GCCTCTCGCTCTCTCCGACGAAACCCCAAAATTTTCTGAGGGAAGCAAGCGGCGGCGCACGGAGTCCCCTCCCTCCCCAATCTGCAACGAACTCGAAGGGCGGCGGCGGCGGCGTACGCCGGTGAATCAGGTTCCCGCGGCGGAGCCGTGCTCCACCCCCGCGCTCCCATGAGCGATCTCCGCGAACTCGGCATGCGGCGGGAGCCGTCGAGGGCTGAGGTGGTGGGGCGTGCCAAGGACGACGGGGACTTCGACGCGCTCCGCCGCGCCATCATCCGCAAGGTCAAGGACAACGAGGTGCTACGCAGCAACATAATTGCAGAGGTGAAGCAGTCAGTGGTAATAAATGAAGATGGCTCTGAAAAGTTAAAGCTGAAAGATCTTTCTGATGCGATTTACCAAGATATCGGGAGCAAAATAATGGGTCAAATCTCAGACGAGATATGGGGTGTCATCCTATCAAATGAAATTGATATCCGAGGAACTTCTGAAACTGTCTACAATAGAATGATGAACCCTGAGCAGCAGCAGGACCCTCCTTCAAAGAAACTGAAGAGGAATGCCAAAGAGGAGCAAGTGTCCCCAGCAAAAGCATCAACTTCTGTTGCAGTCCAGCTGGAAGATGATGATCCAGAGGAACCACCAGGATTTGGTTTCAGTGATCATCAGCGCAGCAACATCATGGCAACTCAGCAGCAGCAGTCGTCAAATACTGAGAATCATAACCAAGTGAAACCAAATGAAGGTGAG-CCCAACGCCGTTAGCTGCCCTGGGGATGATGATGAGGAGGATCCTGATGTGCCTCCTGGGTTTGGTTAACATCCTGCAATCTTCTATTGTGGTGTGATCTGTGATGTTTCTTGTCAACACTAAGAAAAATGATTTAGTTTACA-TTTGCTGCTCGAGGGGTTCATTTGAATATTGAATCATGAAACCGATATGATTGGGATGAGTTCATGTTGCTCCTAGCTTCAGCCTCTTATTTATGAGGGAACAAATGGGCATTTAAGCGATCAAAAAAAAAA]

[+] EMBL AK101799             [GCCTCTCGCTCTCTCCGACGAAACCCCAAAATTTTCTGAGGGAAGCAAGCGGCGGCGCACGGAGTCCCCTCCCTCCCCAATCTGCAACGAACTCGAAGGGCGGCGGCGGCGGCGTACGCCGGTGAATCAGGTTCCCGCGGCGGAGCCGTGCTCCACCCCCGCGCTCCCATGAGCGATCTCCGCGAACTCGGCATGCGGCGGGAGCCGTCGAGGGCTGAGGTGGTGGGGCGTGCCAAGGACGACGGGGACTTCGACGCGCTCCGCCGCGCCATCATCCGCAAGGTCAAGGACAACGAGGTGCTACGCAGCAACATAATTGCAGAGGTGAAGCAGTCAGTGGTAATAAATGAAGATGGCTCTGAAAAGTTAAAGCTGAAAGATCTTTCTGATGCGATTTACCAAGATATCGGGAGCAAAATAATGGGTCAAATCTCAGACGAGATATGGGGTGTCATCCTATCAAATGAAATTGATATCCGAGGAACTTCTGAAACTGTCTACAATAGAATGATGAACCCTGAGCAGCAGCAGGACCCTCCTTCAAAGAAACTGAAGAGGAATGCCAAAGAGGAGCAAGTGTCCCCAGCAAAAGCATCAACTTCTGTTGCAGTCCAGCTGGAAGATGATGATCCAGAGGAACCACCAGGATTTGGTTTCAGTGATCATCAGCGCAGCAACATCATGGCAACTCAGCAGCAGCAGTCGTCAAATACTGAGAATCATAACCAAGTGAAACCAAATGAAGGTGAG CCCAACGCCGTTAGCTGCCCTGGGGATGATGATGAGGAGGATCCTGATGTGCCTCCTGGGTTTGGTTAACATCCTGCAATCTTCTATTGTGGTGTGATCTGTGATGTTTCTTGTCAACACTAAGAAAAATGATTTAGTTTACA TTTGCTGCTCGAGGGGTTCATTTGAATATTGAATCATGAAACCGATATGATTGGGATGAGTTCATGTTGCTCCTAGCTTCAGCCTCTTATTTATGAGGGAACAAATGGGCAT                    ]
[+] EMBL CA765532             [                                                                                                                                                                                                                                                                                                              ACGCAGCAACATAATTGCAGAGGTGAAGCAGTCAGTGGTAATAAATGAAGATGGCTCTGAAAAGTTAAAGCTGAAAGATCTTTCTGATGCGATTTACCAAGATATCGGGAGCAAAATAATGGGTCAAATCTCAGACGAGATATGGGGTGTCATCCTATCAAATGAAATTGATATCCGAGGAACTTCTGAAACTGTCTACAATAGAATGATGAACCCTGAGCAGCAGCAGGACCCTCCTTCAAAGAAACTGAAGAGGAATGCCAAAGAGGAGCAAGTGTCCCCAGCAAAAGCATCAACTTCTGTTGCAGTCCAGCTGGAAGATGATGATCCAGAGGAACCACCAGGATTTGGTTTCAGTGATCATCAGCGCGGCAACATCATGGCAACTCAGCAGCAGCAGTCGTCAAATACTGAGAATCATAACCAAGTGAAACCAAATGAAGGTGAG CCCAACGCCGTTAGCTGCCCTGGGGATGATGATGAGGAGGATCCTGATGTGCCTCCTGGGTTTGGTTAACATCCTGCAATCTTCTATTGTGGTGTGATCTGNGATGGTTCTTGTCAACACTAAGAAAAATGATTTAGTTTACATTTTGCTGCTCGANGGGTTCATTTGAATATTGAATCATGAAANCGATATG                                                                                   ]
[+] EMBL CB096378             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                         cATCAAATGAAATTGATATCCGAGGAACTTCTGAAACTGTCTACAATAGAATGATGAACCCTGAGCAGCAGCAGGACCCTCCTTCAAAGAAACTGAAGAGGAATGCCAAAGAGGAGCAAGTGTCCCCAGCAAAAGCATCAACTTCTGTTGCAGTCCAGCTGGAAGATGATGATCCAGAGGAACCACCAGGATTTGGTTTCAGTGATCATCAGCGCAGCAACATCATGGCAACTCAGCAGCAGCAGTCGTCAAATACTGAGAATCATAACCAAGTGAAACCAAATGAAGGTGAG CCCAACGCCGTTAGCTGCCCTGGGGATGATGATGAGGAGGATCCTGATGTGCCTCCTGGGTTTGGTTAACATCCTGCAATCTTCTATTGTGGTGTGATCTGTGATGTTTCTTGTCAACACTAAGAAAAATGATTTAGTTTACA TTTGCTGCTCGAGGGGTTCATTTGAATATTGAATCATGAAACCGATATGATTGGGATGAGTTCATGTTGCTCCTAGCTTCAGCCTCTTATTTATGAGGGAACAAATAGGCATTTAAGCGA            ]
[+] EMBL AU068374             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AATGAAGGTGAGCCCCAACGCCGTTAGCTGCCCTGGGGATGATGATGAGGAGGATCCTGATGTGCCTCCTGGGTTTGGTTAACATCCTGCAATCTTCTATTGTGGTGTGANCTGTGATGTTTCTTGTCAACNCTAAGAAAAATGATTTAGTTTACA TTTGCTGCNCGAGGGGNTCATTTGAATATTGAATCATGAAACCGATATGATTGGGATGAGTTCATGTTGCTCCTAGCTTCAGCCTCTTATTTATGAGGGAACAAATGGGNATTTAAGCGATCAAAAAAAAAA]




>consensus_9292#0
GCCTCTCGCTCTCTCCGACGAAACCCCAAAATTTTCTGAGGGAAGCAAGCGGCGGCGCAC
GGAGTCCCCTCCCTCCCCAATCTGCAACGAACTCGAAGGGCGGCGGCGGCGGCGTACGCC
GGTGAATCAGGTTCCCGCGGCGGAGCCGTGCTCCACCCCCGCGCTCCCATGAGCGATCTC
CGCGAACTCGGCATGCGGCGGGAGCCGTCGAGGGCTGAGGTGGTGGGGCGTGCCAAGGAC
GACGGGGACTTCGACGCGCTCCGCCGCGCCATCATCCGCAAGGTCAAGGACAACGAGGTG
CTACGCAGCAACATAATTGCAGAGGTGAAGCAGTCAGTGGTAATAAATGAAGATGGCTCT
GAAAAGTTAAAGCTGAAAGATCTTTCTGATGCGATTTACCAAGATATCGGGAGCAAAATA
ATGGGTCAAATCTCAGACGAGATATGGGGTGTCATCCTATCAAATGAAATTGATATCCGA
GGAACTTCTGAAACTGTCTACAATAGAATGATGAACCCTGAGCAGCAGCAGGACCCTCCT
TCAAAGAAACTGAAGAGGAATGCCAAAGAGGAGCAAGTGTCCCCAGCAAAAGCATCAACT
TCTGTTGCAGTCCAGCTGGAAGATGATGATCCAGAGGAACCACCAGGATTTGGTTTCAGT
GATCATCAGCGCAGCAACATCATGGCAACTCAGCAGCAGCAGTCGTCAAATACTGAGAAT
CATAACCAAGTGAAACCAAATGAAGGTGAGCCCAACGCCGTTAGCTGCCCTGGGGATGAT
GATGAGGAGGATCCTGATGTGCCTCCTGGGTTTGGTTAACATCCTGCAATCTTCTATTGT
GGTGTGATCTGTGATGTTTCTTGTCAACACTAAGAAAAATGATTTAGTTTACATTTGCTG
CTCGAGGGGTTCATTTGAATATTGAATCATGAAACCGATATGATTGGGATGAGTTCATGT
TGCTCCTAGCTTCAGCCTCTTATTTATGAGGGAACAAATGGGCATTTAAGCGATCAAAAA
AAAAA

consensusID : consensus_9292#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 441
fasta sequence

                              [GGAAGCCGACAGGGTGCTCACCGTGAGCCCNCANCTNCTGTAGCAGTCCAGCTGGAAGATGATGATCCAGAGGAACCACCAGGATTTGGTTTCAGTGATCATCAGCGCAGCAACATCATGGCAACTCAGCAGCAGCAGTCGTCAAATACTGAGAATCATAACCAAGTGAAACCAAATGAAGGTGAGCCCAACGCCGTTAGCTGCCCTGGGGATGATGATGAGGAGGATCCTGATGTGCCTCCTGGGTTTGGTTAACATCCTGCAATCTTCTATTGTGGTGTGATCTGTGATGTTTCTTGTCAACACTAAGAAAAATGATTTAGTTTACATTTGCTGCTCGAGGGGTTCATTTGAATATTGAATCATGAAACCGATATGATTGGGATGAGTTCATGTTGCTCCTAGCTTCAGCCTCTTATTTATGAGGGAACAAATGGGCAT]

[+] EMBL AA751619             [GGAAGCCGACAGGGTGCTCACCGTGAGCCCNCANCTNCTGTAGCAGTCCAGCTGGAAGATGATGATCCAGAGGAACCACCAGGATTTGGTTTCAGTGATCATCAGCGCAGCAACATCATGGCAACTCAGCAGCAGCAGTCGTCAAATACTGAGAATCATAACCAAGTGAAACCAAATGAAGGTGAGCCCAACGCCGTTAGCTGCCCTGGGGATGATGATGAGGAGGATCCTGATGTGCCTCCTGGGTTTGGTTAACATCCTGCAATCTTCTATTGTGGTGTGATCTGTGATGTTTCTTGTCAACACTAAGAAAAATGATTTAGTTTACATTTGCTGCTCGAGGGGTTCATTTGAATATTGAATCATGAAACCGATATGATTGGGATGAGTTCATGTTGCTCCTAGCTTCAGCCTCTTATTTATGAGGGAACAAATGGGCAT]




>consensus_9292#1
GGAAGCCGACAGGGTGCTCACCGTGAGCCCNCANCTNCTGTAGCAGTCCAGCTGGAAGAT
GATGATCCAGAGGAACCACCAGGATTTGGTTTCAGTGATCATCAGCGCAGCAACATCATG
GCAACTCAGCAGCAGCAGTCGTCAAATACTGAGAATCATAACCAAGTGAAACCAAATGAA
GGTGAGCCCAACGCCGTTAGCTGCCCTGGGGATGATGATGAGGAGGATCCTGATGTGCCT
CCTGGGTTTGGTTAACATCCTGCAATCTTCTATTGTGGTGTGATCTGTGATGTTTCTTGT
CAACACTAAGAAAAATGATTTAGTTTACATTTGCTGCTCGAGGGGTTCATTTGAATATTG
AATCATGAAACCGATATGATTGGGATGAGTTCATGTTGCTCCTAGCTTCAGCCTCTTATT
TATGAGGGAACAAATGGGCAT

consensusID : consensus_9292#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 190
fasta sequence

                              [ACGAAACCCCAAAATTTTCTNAGGGAAGCAAGCGGCGGCGCACGGAGTCCCCTCCCTCCCCAATCTGCAACGAACTCGAAGGGCGGCGGCGGNGGCGTACGCGNTGNAATCAGGTTCCNGCGGCGGACTGNNTCCACCCNCGNNCTCCCATGAGCGATCTCCGCGAACTCNGCATNNGGCGGGAGCTCCG]

[+] EMBL AU108663             [ACGAAACCCCAAAATTTTCTNAGGGAAGCAAGCGGCGGCGCACGGAGTCCCCTCCCTCCCCAATCTGCAACGAACTCGAAGGGCGGCGGCGGNGGCGTACGCGNTGNAATCAGGTTCCNGCGGCGGACTGNNTCCACCCNCGNNCTCCCATGAGCGATCTCCGCGAACTCNGCATNNGGCGGGAGCTCCG]




>consensus_9292#2
ACGAAACCCCAAAATTTTCTNAGGGAAGCAAGCGGCGGCGCACGGAGTCCCCTCCCTCCC
CAATCTGCAACGAACTCGAAGGGCGGCGGCGGNGGCGTACGCGNTGNAATCAGGTTCCNG
CGGCGGACTGNNTCCACCCNCGNNCTCCCATGAGCGATCTCCGCGAACTCNGCATNNGGC
GGGAGCTCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9292#0      GCCTCTCGCTCTCTCCGACGAAACCCCAAAATTTTCTGAGGGAAGCAAGCGGCGGCGCAC 60
consensus_9292#1      ------------------------------------------------------------
consensus_9292#2      ------------------------------------------------------------
                                                                                  

consensus_9292#0      GGAGTCCCCTCCCTCCCCAATCTGCAACGAACTCGAAGGGCGGCGGCGGCGGCGTACGCC 120
consensus_9292#1      ------------------------------------------------------------
consensus_9292#2      ------------------------------------------------------------
                                                                                  

consensus_9292#0      GGTGAATCAGGTTCCCGCGGCGGAGCCGTGCTCCACCCCCGCGCTCCCATGAGCGATCTC 180
consensus_9292#1      ------------------------------------------------------------
consensus_9292#2      ------------------------------------------------------------
                                                                                  

consensus_9292#0      CGCGAACTCGGCATGCGGCGGGAGCCGTCGAGGGCTGAGGTGGTGGGGCGTGCCAAGGAC 240
consensus_9292#1      ------------------------------------------------------------
consensus_9292#2      ------------------------------------------------------------
                                                                                  

consensus_9292#0      GACGGGGACTTCGACGCGCTCCGCCGCGCCATCATCCGCAAGGTCAAGGACAACGAGGTG 300
consensus_9292#1      ------------------------------------------------------------
consensus_9292#2      ------------------------------------------------------------
                                                                                  

consensus_9292#0      CTACGCAGCAACATAATTGCAGAGGTGAAGCAGTCAGTGGTAATAAATGAAGATGGCTCT 360
consensus_9292#1      ------------------------------------------------------------
consensus_9292#2      ------------------------------------------------------------
                                                                                  

consensus_9292#0      GAAAAGTTAAAGCTGAAAGATCTTTCTGATGCGATTTACCAAGATATCGGGAGCAAAATA 420
consensus_9292#1      ------------------------------------------------------------
consensus_9292#2      ------------------------------------------------------------
                                                                                  

consensus_9292#0      ATGGGTCAAATCTCAGACGAGATATGGGGTGTCATCCTATCAAATGAAATTGATATCCGA 480
consensus_9292#1      ------------------------------------------------------------
consensus_9292#2      ------------------------------------------------------------
                                                                                  

consensus_9292#0      GGAACTTCTGAAACTGTCTACAATAGAATGATGAACCCTGAGCAGCAGCAGGACCCTCCT 540
consensus_9292#1      ------------------------------------------------------------
consensus_9292#2      ------------------------------------------------------------
                                                                                  

consensus_9292#0      TCAAAGAAACTGAAGAGGAATGCCAAAGAGGAGCAAGTGTCCCCAGCAAAAGCA-TCAAC 599
consensus_9292#1      -------------------------GGAAGCCGACAGGGTGCTCACCGTGAGCCCNCANC 35
consensus_9292#2      ------------------------------------------------------------
                                                                                  

consensus_9292#0      TTCTGTTGCAGTCCAGCTGGAAGATGATGATCCAGAGGAACCACCAGGATTTGGTTTCAG 659
consensus_9292#1      TNCTGTAGCAGTCCAGCTGGAAGATGATGATCCAGAGGAACCACCAGGATTTGGTTTCAG 95
consensus_9292#2      -----------------------------------ACGAAACCCCAAAATTT--TCTNAG 23
                                                         * *** * ***  ****  * * **

consensus_9292#0      TGATCATCAGCGCAGCAACATCATGGCAACTCAGCAGCAGCAGTCGTCAAATACTGAGAA 719
consensus_9292#1      TGATCATCAGCGCAGCAACATCATGGCAACTCAGCAGCAGCAGTCGTCAAATACTGAGAA 155
consensus_9292#2      GGA--AGCAA-GCGGCGGCGCACGGAGTCCCCTCCCTCCCCAATC------TGCAACGAA 74
                       **  * **  ** **  *     *    * *  *  *  ** **      * *   ***

consensus_9292#0      TCATAACCAAGTGAAACCAAATGAAGGTGAGCCCAACGCCGTTAGCTGCCCTGGGGATGA 779
consensus_9292#1      TCATAACCAAGTGAAACCAAATGAAGGTGAGCCCAACGCCGTTAGCTGCCCTGGGGATGA 215
consensus_9292#2      CT----CGAAGGGCGGC--GGCGGNGGCGTACGCGNTGNAATCAGGTTCCN--------G 120
                            * *** *   *     *  ** *  * *   *   * ** * **          

consensus_9292#0      TGATGAGGAGGATCCTGATGTGCCTCCTGGGTTTGGTTAACATCCTGCAATCTTCTATTG 839
consensus_9292#1      TGATGAGGAGGATCCTGATGTGCCTCCTGGGTTTGGTTAACATCCTGCAATCTTCTATTG 275
consensus_9292#2      CGGCGGACTGNNTCCACCCNCGNNCTCCCA---TGAGCGATCTCC-GCGAACTCNGCATN 176
                       *  *    *  ***      *    *      **    *  *** ** * **     * 

consensus_9292#0      TGGTGTGATCTGTGATGTTTCTTGTCAACACTAAGAAAAATGATTTAGTTTACATTTGCT 899
consensus_9292#1      TGGTGTGATCTGTGATGTTTCTTGTCAACACTAAGAAAAATGATTTAGTTTACATTTGCT 335
consensus_9292#2      NGGCGGGAGCTCCG---------------------------------------------- 190
                       ** * ** **  *                                              

consensus_9292#0      GCTCGAGGGGTTCATTTGAATATTGAATCATGAAACCGATATGATTGGGATGAGTTCATG 959
consensus_9292#1      GCTCGAGGGGTTCATTTGAATATTGAATCATGAAACCGATATGATTGGGATGAGTTCATG 395
consensus_9292#2      ------------------------------------------------------------
                                                                                  

consensus_9292#0      TTGCTCCTAGCTTCAGCCTCTTATTTATGAGGGAACAAATGGGCATTTAAGCGATCAAAA 1019
consensus_9292#1      TTGCTCCTAGCTTCAGCCTCTTATTTATGAGGGAACAAATGGGCAT-------------- 441
consensus_9292#2      ------------------------------------------------------------
                                                                                  

consensus_9292#0      AAAAAA 1025
consensus_9292#1      ------
consensus_9292#2      ------