cluster # 9294

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Oryza sativa
cluster # 9294 cluster # 9294 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9294#0 length = 873 sequences # 2

consensus_9294#1 length = 431 sequences # 3
consensus_9294#2 length = 311 sequences # 1

consensusID : consensus_9294#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 873
fasta sequence

                              [ACTTCGCTTCTCTTGTCCCCTCCCCCATCTCTGCGATCCAAAGGCGGCGGCGGCGGCGAGCTCGGTGGCATGGCGATGCGGCTGGCGGCGGCGGCGGCGTTCGTGCGACGCCTCGTGCCGGCGCGAAATCCGGTGATCTCGGCGGAGGCGGAGGCGGTGACCTGCGGGCGCGGGGACAAGAAGACCAAGCGCGGGAAGCGGTTCAAGGGCTCCTACGGCAACGCGCGGCCGAAGCGGGAGAAGAAGATCGAGCGCATCAAGGACCGCGTCGAGGTGCCCCGCTCCACCCCGTGGCCGCTCCCCTTCAAGCTCATCTGAGCCAAAGCCCAGCGCGAGCTCCCCCCCGTCGGTTCGTGAGGCTACCTAGGGTTTTCCTTTCCCTTTTTCGATTTGGTACTCTTGTCCAACTCTTGCGCCTGCGCCCACGCTTGCGTGGGCACG-CATCGTTTTTTTAGTTCCTCATATTGGGCTGTGTCAGATATGTATTGTCGAATCAAGCTGCCA-TATCGCAACATTGTAGAATGCAGTCCATATGGACGAAAATATCATCACC-GTGTTTGGTCTGCTCACCGGCCAAAAGATATAGAGAAAAAAACTCGCGGGGGGTGCCCAGGCCCCCAATTTGCCCTTTGCGGAGTGGGATACACCCTCGCTTCTCTGGCAGTAATTCCCTTTTTTCCCATTTTGCCTTACTCCGGTGTACCCACTTTCAATGCCCCTTTTCACTTTCCCCGCTTCTTGAATGGCGATGGGTGACGCCCTTTCCGGTCCGCCCTTTATTCCATTTCCCGGCCCCGGCCGCTTCCGCACTCCCCCCCTACTTGTTTTGACTCGACCCGCCGTGCGCCAGTCGCCCCACATTCTTTATTTTCC]

[+] EMBL AK059096             [ACTTCGCTTCTCTTGTCCCCTCCCCCATCTCTGCGATCCAAAGGCGGCGGCGGCGGCGAGCTCGGTGGCATGGCGATGCGGCTGGCGGCGGCGGCGGCGTTCGTGCGACGCCTCGTGCCGGCGCGAAATCCGGTGATCTCGGCGGAGGCGGAGGCGGTGACCTGCGGGCGCGGGGACAAGAAGACCAAGCGCGGGAAGCGGTTCAAGGGCTCCTACGGCAACGCGCGGCCGAAGCGGGAGAAGAAGATCGAGCGCATCAAGGACCGCGTCGAGGTGCCCCGCTCCACCCCGTGGCCGCTCCCCTTCAAGCTCATCTGAGCCAAAGCCCAGCGCGAGCTCCCCCCCGTCGGTTCGTGAGGCTACCTAGGGTTTTCCTTTCCCTTTTTCGATTTGGTACTCTTGTCCAACTCTTGCGCCTGCGCCCACGCTTGCGTGGGCACG CATCGTTTTTTTAGTTCCTCATATTGGGCTGTGTCAGATATGTATTGTCGAATCAAGCTGCCA TATCGCAACATTGTAGAATGCAGTCCATATGGACGAAAATATCATCACC GTGT                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CA758224             [                   CTCCCCCATCTCTGCGATCCAAAGGCGGCGGCGGCGGCGAGCTCGGTGGCATGGCGATGCGGCTGGCGGCGGCGGCGGCGTTCGTGCGACGCCTCGTGCCGGCGCGATATCCGGTGATCTCGGCGGAGGCGGAGGCGGTGACCTGCGGGCGCGGTGACAAGAAGACCAAGCGCGGGAAGCGGTTCAAGGGCTCCTACGGCAACGCGCGGCCGAAGCGGGAGAAGAAGATCGAGCGCATCAAGGACCGCGTCGAGGTGCCCCGCTCCACCCCGTGGCCGCTCCCCTTCAAGCTCATCTGAGCCAAAGCCCAGCGCGAGCTCCCCCCCGTCGGTTCGTGAGGCTACCTAGGGTTTTCCTTTCCCTTTTTCGATTTGGTACTCTTGTACAACTCTTGCGCCTGCGCCCACGCTTGCGTGGGCACGCCATCGTTTTTTTAGTTCCTCATCTTGGGCTGCGGCACATATGTCTTGTCGAATCAAGCTGCCAGTATCTCACCATTGCAGATTGCAGTGCATATGGACGAAAATATCATCTCCAGTGCTTGGTCTGCTCACCGGCCAAAAGATATAGAGAAAAAAACTCGCGGGGGGTGCCCAGGCCCCCAATTTGCCCTTTGCGGAGTGGGATACACCCTCGCTTCTCTGGCAGTAATTCCCTTTTTTCCCATTTTGCCTTACTCCGGTGTACCCACTTTCAATGCCCCTTTTCACTTTCCCCGCTTCTTGAATGGCGATGGGTGACGCCCTTTCCGGTCCGCCCTTTATTCCATTTCCCGGCCCCGGCCGCTTCCGCACTCCCCCCCTACTTGTTTTGACTCGACCCGCCGTGCGCCAGTCGCCCCACATTCTTTATTTTCC]




>consensus_9294#0
ACTTCGCTTCTCTTGTCCCCTCCCCCATCTCTGCGATCCAAAGGCGGCGGCGGCGGCGAG
CTCGGTGGCATGGCGATGCGGCTGGCGGCGGCGGCGGCGTTCGTGCGACGCCTCGTGCCG
GCGCGAAATCCGGTGATCTCGGCGGAGGCGGAGGCGGTGACCTGCGGGCGCGGGGACAAG
AAGACCAAGCGCGGGAAGCGGTTCAAGGGCTCCTACGGCAACGCGCGGCCGAAGCGGGAG
AAGAAGATCGAGCGCATCAAGGACCGCGTCGAGGTGCCCCGCTCCACCCCGTGGCCGCTC
CCCTTCAAGCTCATCTGAGCCAAAGCCCAGCGCGAGCTCCCCCCCGTCGGTTCGTGAGGC
TACCTAGGGTTTTCCTTTCCCTTTTTCGATTTGGTACTCTTGTCCAACTCTTGCGCCTGC
GCCCACGCTTGCGTGGGCACGCATCGTTTTTTTAGTTCCTCATATTGGGCTGTGTCAGAT
ATGTATTGTCGAATCAAGCTGCCATATCGCAACATTGTAGAATGCAGTCCATATGGACGA
AAATATCATCACCGTGTTTGGTCTGCTCACCGGCCAAAAGATATAGAGAAAAAAACTCGC
GGGGGGTGCCCAGGCCCCCAATTTGCCCTTTGCGGAGTGGGATACACCCTCGCTTCTCTG
GCAGTAATTCCCTTTTTTCCCATTTTGCCTTACTCCGGTGTACCCACTTTCAATGCCCCT
TTTCACTTTCCCCGCTTCTTGAATGGCGATGGGTGACGCCCTTTCCGGTCCGCCCTTTAT
TCCATTTCCCGGCCCCGGCCGCTTCCGCACTCCCCCCCTACTTGTTTTGACTCGACCCGC
CGTGCGCCAGTCGCCCCACATTCTTTATTTTCC

consensusID : consensus_9294#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 431
fasta sequence

                              [GATTCGGCACGAGTGGCAANNAGGACCGCGTCNNGGTGNCCCACTCCACCCCGTGGCCGCTCCCCTTCAAGCTCATCTGNGCCAAAGCCCAGCGCGNGCTCCCCCCCGTCGGTTCGTGAGGCTACCTAGGGTTTTCCTTTCCCTTTTTCGATTTGGTACTCTTGTCCAACTCTTGCGCCTGCGCCCACGCTTGCGTGGGCACGCAT-CGTTTTTTTAGTTCCTCATATTGGGCTGTGTCAGATATGTATTGTCGAATCAAGCTGCCATATCGCAACATTGTANAATGCAGTCCATATGGACGAAAATATCATCACCATGTTTGTTTGTCCAGTGTCCTTTTGCTGGGTGTCATCTGGATGGTGATAATACGCAGTTTATGATAATTGGAAATGGAATTTACGGTTTTGGATTGAAAAAAAAAAAAAAAAAAA]

[+] EMBL AA751847             [GATTCGGCACGAGTGGCAANNAGGACCGCGTCNNGGTGNCCCACTCCACCCCGTGGCCGCTCCCCTTCAAGCTCATCTGNGCCAAAGCCCAGCGCGNGCTCCCCCCCGTCGGTTCGTGAGGCTACCTAGGGTTTTCCTTTCCCTTTTTCGATTTGGTACTCTTGTCCAACTCTTGCGCCTGCGCCCACGCTTGCGTGGGCACGCAT CGTTTTTTTAGTTCCTCATATTGGGCTGTGTCAGATATGTATTGTCGAATCAAGCTGCCATATCGCAACATTGTANAATGCAGTCCATATGGACNAAAATATCATCACCATGTTTGTTTGTCCAGTGTCCTTTTGCTGGGTGTCATCTGGATGGTGATAATACGCAGTTTATGATAATTGGAAATGGAATTTACGGTTTTGGATTG                   ]
[+] EMBL AU174812             [                 atcaAGGNCCGCGTCGAGGTGCCCCGCTCCACCCCGTGGCCGCTCCCCTTCAAGCTCATTTGAGCCAAAGCCCAGCGCGAGCTCCCCCCCGTCGGTTCGTGAGGCTACCTAGGGTTTTCCTTTCCCTTTTTCGATTTGGNACTCTTGTCCAACTCTTGCGCCTGCGCCCACGCTTGCGTGGGCACGCAT CGTTTTTTTAGTTCCTCATATTGGGCTGTGTCANATATGTATTGTCGAATCAAGCTGCCATATCGCAACATTGTANAATGCAGTCCATATGGACGAAAATATCATCCCCATGTTTGTTTGTCCAGTGTCCTTTTGCTGGGNGTCATNTGGATGGTGATAATACNCAGTTTATGATAATTGGAAATGGAATTTACGGTTTTGGNTTNAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU175207             [                                                                                                           GTCGGTTCGTGAGGCTACCTAGGGTTTTCCTTTCCCTTTTTCGATTTGGTACTCTTGTCCAACTCTTGCGCCTGC CNCACGCTTG GACGNCA   ATNCGTTTTTTTAGTTCCTCATATTGGGCTGTGTCAGATATGTATTGTCGAATCAAGCTGCCATATCGCAACATTGTAGAATGCAGTCCATATGGACGAAAATATCATCACCATGTTTGTTTG                                                                                                         ]




>consensus_9294#1
GATTCGGCACGAGTGGCAANNAGGACCGCGTCNNGGTGNCCCACTCCACCCCGTGGCCGC
TCCCCTTCAAGCTCATCTGNGCCAAAGCCCAGCGCGNGCTCCCCCCCGTCGGTTCGTGAG
GCTACCTAGGGTTTTCCTTTCCCTTTTTCGATTTGGTACTCTTGTCCAACTCTTGCGCCT
GCGCCCACGCTTGCGTGGGCACGCATCGTTTTTTTAGTTCCTCATATTGGGCTGTGTCAG
ATATGTATTGTCGAATCAAGCTGCCATATCGCAACATTGTANAATGCAGTCCATATGGAC
GAAAATATCATCACCATGTTTGTTTGTCCAGTGTCCTTTTGCTGGGTGTCATCTGGATGG
TGATAATACGCAGTTTATGATAATTGGAAATGGAATTTACGGTTTTGGATTGAAAAAAAA
AAAAAAAAAAA

consensusID : consensus_9294#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 311
fasta sequence

                              [CCAAAGGCGGCGGCGGCGGCGAGCTCGGTGGCATGGCGATGCGGCTGGCGGCGGCGGCGGCGTTCGTGCGACGCCTCGTGCCGGCGCGAAATCCGGTGATCTCGGCGGAGGCGGAGGCGGTGACCTGCGGGCGCGGGGACAAGAAGACCAAGCGCGGGAAGCGGTTCAAGGGCTCCTACGGCAACGNGCGGCCGAAGCGGGAGAAGAAAGATCGAGCGCATCAAGGACCGCNTCGAGGTGCCCCGNTTCAACCCGTTGGNCGGTTCCCCTTNAAGCTTAATNTNAGCNAAAGNCNAAGNGNGAGTTNCCNN]

[+] EMBL OS14223A             [CCAAAGGCGGCGGCGGCGGCGAGCTCGGTGGCATGGCGATGCGGCTGGCGGCGGCGGCGGCGTTCGTGCGACGCCTCGTGCCGGCGCGAAATCCGGTGATCTCGGCGGAGGCGGAGGCGGTGACCTGCGGGCGCGGGGACAAGAAGACCAAGCGCGGGAAGCGGTTCAAGGGCTCCTACGGCAACGNGCGGCCGAAGCGGGAGAAGAAAGATCGAGCGCATCAAGGACCGCNTCGAGGTGCCCCGNTTCAACCCGTTGGNCGGTTCCCCTTNAAGCTTAATNTNAGCNAAAGNCNAAGNGNGAGTTNCCNN]




>consensus_9294#2
CCAAAGGCGGCGGCGGCGGCGAGCTCGGTGGCATGGCGATGCGGCTGGCGGCGGCGGCGG
CGTTCGTGCGACGCCTCGTGCCGGCGCGAAATCCGGTGATCTCGGCGGAGGCGGAGGCGG
TGACCTGCGGGCGCGGGGACAAGAAGACCAAGCGCGGGAAGCGGTTCAAGGGCTCCTACG
GCAACGNGCGGCCGAAGCGGGAGAAGAAAGATCGAGCGCATCAAGGACCGCNTCGAGGTG
CCCCGNTTCAACCCGTTGGNCGGTTCCCCTTNAAGCTTAATNTNAGCNAAAGNCNAAGNG
NGAGTTNCCNN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9294#0      ACTTCGCTTCTCTTGTCCCCTCCCCCATCTCTGCGATCCAAAGGCGGCGGCGGCGGCGAG 60
consensus_9294#2      -------------------------------------CCAAAGGCGGCGGCGGCGGCGAG 23
consensus_9294#1      -------------------------------------GATTCGGCACGAGTGGCAANNAG 23
                                                                ***    * ***    **

consensus_9294#0      CTCGGTGGCATGGCGATGCGGCTGGCGGCGGCGGCGGCGTTCGTGCGACGCCTC-GTGCC 119
consensus_9294#2      CTCGGTGGCATGGCGATGCGGCTGGCGGCGGCGGCGGCGTTCGTGCGACGCCTC-GTGCC 82
consensus_9294#1      GACCGCGTCNNGGTGNCCCACTCCACCCCGTGGCCGCTCCCCTTCAAGCTCATCTGNGCC 83
                        * * * *  ** *   *      *  **  * **     * *    * * ** * ***

consensus_9294#0      GGCGCGAAATCCGGTGATCTCGGCGGAGGCGGAGGCGGTGACCTGCGGGCGCGGGGACAA 179
consensus_9294#2      GGCGCGAAATCCGGTGATCTCGGCGGAGGCGGAGGCGGTGACCTGCGGGCGCGGGGACAA 142
consensus_9294#1      AAAGCCCAGCGCGNGCTCCCCCCCGTCGGTTCGTGAGGCTACCTA-GGGTTTTCCTTTCC 142
                         **  *   **     * *  **  **     * **  ****  ***           

consensus_9294#0      GAAGACCAAGCGCGGGAAGCGGTTCAAGGGCTCCTACGGCAACGCGCG-GCCGAAGCGGG 238
consensus_9294#2      GAAGACCAAGCGCGGGAAGCGGTTCAAGGGCTCCTACGGCAACGNGCG-GCCGAAGCGGG 201
consensus_9294#1      CTTTTTCGATTTGGTACTCTTGTCCAA---CTCTTGCGCCTGCGCCCACGCTTGCGTGGG 199
                            * *    *       ** ***   *** * ** *  **  *  **    * ***

consensus_9294#0      AGAAGAA-GATCG---AGCGCATCAA---GGACCGCGTCGAGGTGCCCCGCTCCACCCCG 291
consensus_9294#2      AGAAGAAAGATCG---AGCGCATCAA---GGACCGCNTCGAGGTGCCCCGNTTCAACCCG 255
consensus_9294#1      CACGCATCGTTTTTTTAGTTCCTCATATTGGGCTGTGTCAGATATGTATTGTCGAATCAA 259
                           *  * *     **  * ***    ** * *  **            *  *  *  

consensus_9294#0      T--GGCCGCTCCCCTTCAAGCTCA-TCTGAGCCAAA--GCCCA-GCGCGAGCTCCCCCCC 345
consensus_9294#2      TTGGNCGGTTCCCCTTNAAGCTTAATNTNAGCNAAA--GNCNAAGNGNGAGTTNCCNN-- 311
consensus_9294#1      GCTGCCATATCGCAACATTGTANAATGCAGTCCATATGGACGAAAATATCATCACCATGT 319
                         * *   ** *      *   * *     * * *  * * *           **    

consensus_9294#0      GTCGGTTCGTGAGGCTACCTAGGGTTTTCCTTTCCCTTTTTCGATTTGGTACTCTTGTCC 405
consensus_9294#2      ------------------------------------------------------------
consensus_9294#1      TTGTTTGTCCAGTGTCCTTTTGCTGGGTGTCATCTGGATGGTGATAATACGCAGTTTATG 379
                                                                                  

consensus_9294#0      AACTCTTGCGCCTGCGCCCACGCTTGCGTGGGCACGCATCGTTTTTTTAGTTCCTCATAT 465
consensus_9294#2      ------------------------------------------------------------
consensus_9294#1      ATAATTGGAAATGGAATTTACGGTTTTGGATTGAAAAAAAAAAAAAAAAAAA-------- 431
                                                                                  

consensus_9294#0      TGGGCTGTGTCAGATATGTATTGTCGAATCAAGCTGCCATATCGCAACATTGTAGAATGC 525
consensus_9294#2      ------------------------------------------------------------
consensus_9294#1      ------------------------------------------------------------
                                                                                  

consensus_9294#0      AGTCCATATGGACGAAAATATCATCACCGTGTTTGGTCTGCTCACCGGCCAAAAGATATA 585
consensus_9294#2      ------------------------------------------------------------
consensus_9294#1      ------------------------------------------------------------
                                                                                  

consensus_9294#0      GAGAAAAAAACTCGCGGGGGGTGCCCAGGCCCCCAATTTGCCCTTTGCGGAGTGGGATAC 645
consensus_9294#2      ------------------------------------------------------------
consensus_9294#1      ------------------------------------------------------------
                                                                                  

consensus_9294#0      ACCCTCGCTTCTCTGGCAGTAATTCCCTTTTTTCCCATTTTGCCTTACTCCGGTGTACCC 705
consensus_9294#2      ------------------------------------------------------------
consensus_9294#1      ------------------------------------------------------------
                                                                                  

consensus_9294#0      ACTTTCAATGCCCCTTTTCACTTTCCCCGCTTCTTGAATGGCGATGGGTGACGCCCTTTC 765
consensus_9294#2      ------------------------------------------------------------
consensus_9294#1      ------------------------------------------------------------
                                                                                  

consensus_9294#0      CGGTCCGCCCTTTATTCCATTTCCCGGCCCCGGCCGCTTCCGCACTCCCCCCCTACTTGT 825
consensus_9294#2      ------------------------------------------------------------
consensus_9294#1      ------------------------------------------------------------
                                                                                  

consensus_9294#0      TTTGACTCGACCCGCCGTGCGCCAGTCGCCCCACATTCTTTATTTTCC 873
consensus_9294#2      ------------------------------------------------
consensus_9294#1      ------------------------------------------------