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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9430#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1814 fasta sequence
[TCTTTCCCCTTCCTCCTCGGCCTCGGCGGGCGGCCTCCGATACCGATACGCCGTCGGAGTCGATTCCGATTGCGATTGAAGGTCTGTTCTTCTATTTATTATAGTATATATAGATCCAGTCGGCTGCTGCGTTGAAAACCAGGAGAGGATCAGATCATGGCGCAAATGGGCGTCATGGACGCTTCCCTGTGTCCTCCTTTCCACGGCCGGTCCGTCGACAAGGGGACGCGGCGCAGGCCAAGATGGGTACTCCTCGACAAGCTCGCCTACTTCGCCGGCGCCGACGTCCGCAACGCCACCACTGCTACTTCCAAAACAAGGGAGGGCCATGAAATCCAGGTGACCCTGTGCACCGCCGCCCAGCCGCAGCTCGTCTCCTACGTGTGCGTCCACTCTCCCACCCTCAATCCTGCATCCGATGACTACGCCATGGAGCCCCAGATCATCGCCGCACACGATGACCTCCTCCTCATCCGCCTCATCCTCGGCAGAGGTAACAGGTTTACTGTATCCCTCGCCGACTACTTCGTTTACCAGGCCTCCATTGCTGATGATATCCCGCCGTCTCTCACGCGCATCACCCATCCCGGCCCTATGATCACCTTCACTAACCACGAGGTCGCCATCCTGCACTACATCCCTGAGGACACCCACCACCACCCGTATAGGCCACCAGGGGAATACAAGCTCCATCTCTACCACTCCCACACTCAGCAATGGACCACCACCCACTTCAACCTTGCGGCAACAATGCCAGATCTCTCTCCCTTCCACCATCGCACAACCAACGTCATCAACCTCACTCACCAATCTCCTGGTCTCATGGCTTTCGTCGACCTCTGGCAGGGCCTCTTGCTCATCAATGTGCTTGACAAGGTACAGCCTGCCGCACCTCGCTACATCCCATTGCCACCACCGCTCAAGCAGGGTAAAGTCATTTCCGGCAGAGTCGACCCAACAGATGTTCGTGACATTGCCGTCGACGCAAAAGGTCACATCAACTTTGTTGAGCTGGAGGTCGATGCTATTCAACACGAGTCGGATAGAACCGGTTACATCTCTCAGGGCTGGACGGTTGCCAAATGGAGCTGCAGTAATACTGAATCCGACGATTGCTGCTGGCACATGGACTGCAAGCTCAACGCTTCTGACATCTCTCATCTGATGCCTCCTGAGCTACCCAACTACTGTCACCCAACCCCAACCTTGGAGAGACTCCACATAGGTCATCCCTTGCTCAGTTTGGACAACAATGGCGATGTTGTTTACTTCATGGCCAAGGTCGACCACCGTGATTACAAGGCATGGGTCATTCCTGTTGACATGAGGAAAAGGCTCATACATGAACCAGCTGTTTTTGAGGGTGCTCCGCGTACTCTTGGCATAGGTTCCACCTTCATACAAACCACCATCTCCAACTATCCACAACCTGCTCCA-GGTAAAAAGAGAAAACAGAAACAGCCTGGGATGTTGCTGGGATCCTCAAGCAAAAGGAAGTCCGAAACTCCCTATTTGACAAATGTGGTGCTGCCACTGCCAACGAGGCACGGTGTGCAAAAACAACCGGATGCGGAAGGAGGTAGCATGGAAGCTGAATTTTCAGATAATATGTTATTATAATAAGCTGGGATATGAGTAATAGTGGTAATTATCATATTTTATTGATATAGTGTGATCCCGTATCAAGACTATGATCCCTCGGTTATTCTCTCCTATGTCGTGCTTGTATGTGTAAGGGACGACCTGAATGAACTCAGTTCAGACATTTTTCTGTCCTATCTATGTGGTACACTTGTTTTATCAAAAAAAAAAAA]
[+] EMBL AK065613 [TCTTTCCCCTTCCTCCTCGGCCTCGGCGGGCGGCCTCCGATACCGATACGCCGTCGGAGTCGATTCCGATTGCGATTGAAGGTCTGTTCTTCTATTTATTATAGTATATATAGATCCAGTCGGCTGCTGCGTTGAAAACCAGGAGAGGATCAGATCATGGCGCAAATGGGCGTCATGGACGCTTCCCTGTGTCCTCCTTTCCACGGCCGGTCCGTCGACAAGGGGACGCGGCGCAGGCCAAGATGGGTACTCCTCGACAAGCTCGCCTACTTCGCCGGCGCCGACGTCCGCAACGCCACCACTGCTACTTCCAAAACAAGGGAGGGCCATGAAATCCAGGTGACCCTGTGCACCGCCGCCCAGCCGCAGCTCGTCTCCTACGTGTGCGTCCACTCTCCCACCCTCAATCCTGCATCCGATGACTACGCCATGGAGCCCCAGATCATCGCCGCACACGATGACCTCCTCCTCATCCGCCTCATCCTCGGCAGAGGTAACAGGTTTACTGTATCCCTCGCCGACTACTTCGTTTACCAGGCCTCCATTGCTGATGATATCCCGCCGTCTCTCACGCGCATCACCCATCCCGGCCCTATGATCACCTTCACTAACCACGAGGTCGCCATCCTGCACTACATCCCTGAGGACACCCACCACCACCCGTATAGGCCACCAGGGGAATACAAGCTCCATCTCTACCACTCCCACACTCAGCAATGGACCACCACCCACTTCAACCTTGCGGCAACAATGCCAGATCTCTCTCCCTTCCACCATCGCACAACCAACGTCATCAACCTCACTCACCAATCTCCTGGTCTCATGGCTTTCGTCGACCTCTGGCAGGGCCTCTTGCTCATCAATGTGCTTGACAAGGTACAGCCTGCCGCACCTCGCTACATCCCATTGCCACCACCGCTCAAGCAGGGTAAAGTCATTTCCGGCAGAGTCGACCCAACAGATGTTCGTGACATTGCCGTCGACGCAAAAGGTCACATCAACTTTGTTGAGCTGGAGGTCGATGCTATTCAACACGAGTCGGATAGAACCGGTTACATCTCTCAGGGCTGGACGGTTGCCAAATGGAGCTGCAGTAATACTGAATCCGACGATTGCTGCTGGCACATGGACTGCAAGCTCAACGCTTCTGACATCTCTCATCTGATGCCTCCTGAGCTACCCAACTACTGTCACCCAACCCCAACCTTGGAGAGACTCCACATAGGTCATCCCTTGCTCAGTTTGGACAACAATGGCGATGTTGTTTACTTCATGGCCAAGGTCGACCACCGTGATTACAAGGCATGGGTCATTCCTGTTGACATGAGGAAAAGGCTCATACATGAACCAGCTGTTTTTGAGGGTGCTCCGCGTACTCTTGGCATAGGTTCCACCTTCATACAAACCACCATCTCCAACTATCCACAACCTGCTCCA GGTAAAAAGAGAAAACAGAAACAGCCTGGGATGTTGCTGGGATCCTCAAGCAAAAGGAAGTCCGAAACTCCCTATTTGACAAATGTGGTGCTGCCACTGCCAACGAGGCACGGTGTGCAAAAACAACCGGATGCGG AGGAGGTAGCATGGAAGCTGAATTTTCAGATAATATGTTATTATAATAAGCTGGGATATGAGTAATAGTGGTAATTATCATATTTTATTGATATAGTGTGATCCCGTATCAAGACTATGATCCCTCGGTTATTCTCTCCTATGTCGTGCTTGTATGTGTAAGGGACGACCTGAATGAACTCAGTTCAGACATTTTTCTGTCCTATCTATGTGGTACAC ]
[+] EMBL OSC26921 [ TCACCAATCTCCTGGTCTCATGGCTTTCGTCGACCTCTGGCAGGGCCTCTTGCTCATCAATGTGCTTGACAAGGTACAGCCTGCCGCACCTCGCTACATCCCATTGCCACCACCGCTCAAGCAGGGTAAAGTCATTTCCGGCAGAGTCGACCCAACAGATGTTCGTGACATTGCCGTCGACGCAAAAGGTCACATCAACTTTGTTGAGCTGGAGGTCGATGCTATTCAACACGAGTNGGATAGAACCGGTTACATCTCTCAGGGCTGGACGGTTGCCAAATGGAGCTGCAGTAATACTGAATCCGACGATTGCTGC ]
[+] EMBL CA758167 [ CATACATGAACCAGCTGTTTTTGAGGGTGCTCCGCGTACTCTTGGCATAGGTTCCACCTTCATACAAACCACCATCTCCAACTATCCACAACCTGCTCCAGGGTAAAAGGAGAAAACAGAAACAGCCTGGGATGTTGCTGGGATCCTCAAGCAAAAGGAAGTCCGAAACTCCCTATTTGACAAATGTGGTGCTGCCACTGCCAACGAGGCACGGTGTGCAAAAACAACCGGATGCG ]
[+] EMBL AU063152 [ ACCTGCTCCA GGTAAAAAGAGAAAACAGAAACAGCCTGGGATGTTGCTGGGATCCTCAAGCAAAAGGAAGTCCGAAACTCCCTATTTGACAAATGTGGTGCTGCCACTGCCAACGAGGCACGGTGTGCAAAAACAACCGGATGCGGAAGGAGGTAGCATGGAAGCTGAATTTTCAGATAATATGTTATTATAATAAGCTGGGATATGAGTAATAGTGGTAATTATCATATTTTATTGATATAGTGTGATCCCGTATCAAGACTATGATCCCTCGGTTATTCTCTCCTATGTAGTGCTTGTATGTGTAAGGGACGACCTGAATGAACTCAGTTCAGACATTTTTCTGTNCTATCTATGTGGTACACTTGTTTTATCAAAAAAAAAAAA]
[+] EMBL C97365 [ TCCA GGTAAAAAGAGAAAACAGAAACAGCCTGGGATGTTGCTGGGATCCTCAAGCAAAAGGAAGTCCGAAACTCCCTATTTGACAAATGTGGTGCTGCCACTGCCAACGAGGCACGGTGTGCAAAAACAACCGGATGCGGAAGGAGGTAGCATGGAAGCTGAATTTTCAGATAATATGTTATTATAATAAGCTGGGATATGAGTAATAGTGGTAATTATCATATTTTATTGATATAGTGTGATCCCGTATCAAGACTATGATCCCTCGGTTATTCTCTCCTATGTCGTGCTTGTATGTGTAAGGGACGACCTGAATGAACTCAGTTCAGACATTTTTCTGTCCTATCTATGTGGTACACTTGTTTTATCAAAAAAAAAA ]
consensusID : consensus_9430#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 887 fasta sequence
[GCCTCGGCGGGCGGCCTCCGATACCGATACGCCGTCGGAGTCGATTCCGATTGCGATTGAAGGTAAAAGGAGAAAACAGAAACAGCCTGGGATGTTGCTGGGATCCTCAAGCAAAAGGAAGTCCGAAACTCCCTATTCTACAAATGTGGTGCTGCCACTGCCAACGAGGCACGGTGTGCAAAAACAACCGGATGCGGAAGGAGGTAGCATGGAAGCTGAATTTTCAGATAATATGTTATTATAATAAGCTGGGATATGAGTAATAGTGGTAATTATCATATTTTATTGATATAGTGTGATCCCGTATCAAGACTATGATCCCTCGGTTATTCTCTCCTATGTCGTGCTTGTATGTGCAAGGGACGACCTGAATGAACTCAGTTCAGACATTTTTCTGTCCTATCTATGTGGTACACTTGTTTTATCACTCTGCTGAGTGTGTTCGGGAAAAAAAAAAAAAAAAAAAAGTAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAATTTTAGGGGGGGGCCCCGTCCCCCCAAATTGCTCCTCTATGGGTTATTGGCTTGTGACCCCCCCCCCCCTTGGCCCTCGTTATTACAAACCACCGAAACCGGGGAAAACCCCCTCTCTGACCCCCCCTTAATTACCACATTCCGTCCTCCCCCCCCCTCNTGCCATATCGCCTGTTTTGTCTTAAAACGCCCCTTCCTTGTCCTCCCTCACCCCCCTGTTTTCTGTTCATCATGGTAAAGGGTGCCGCCCCAATTATAATAACCCTATTACCCTCTGACGGCTATAGAATCCTATCAAACTACAATCTCACACCCTTGCTTCAAAAACACTTCTCTTGGCAGACTTATCTCTATTACCGGCCTCTATCTCA]
[+] EMBL CA757889 [GCCTCGGCGGGCGGCCTCCGATACCGATACGCCGTCGGAGTCGATTCCGATTGCGATTGAAGGTAAAAGGAGAAAACAGAAACAGCCTGGGATGTTGCTGGGATCCTCAAGCAAAAGGAAGTCCGAAACTCCCTATTCTACAAATGTGGTGCTGCCACTGCCAACGAGGCACGGTGTGCAAAAACAACCGGATGCGGAAGGAGGTAGCATGGAAGCTGAATTTTCAGATAATATGTTATTATAATAAGCTGGGATATGAGTAATAGTGGTAATTATCATATTTTATTGATATAGTGTGATCCCGTATCAAGACTATGATCCCTCGGTTATTCTCTCCTATGTCGTGCTTGTATGTGCAAGGGACGACCTGAATGAACTCAGTTCAGACATTTTTCTGTCCTATCTATGTGGTACACTTGTTTTATCACTCTGCTGAGTGTGTTCGGGAAAAAAAAAAAAAAAAAAAAGTAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAATTTTAGGGGGGGGCCCCGTCCCCCCAAATTGCTCCTCTATGGGTTATTGGCTTGTGACCCCCCCCCCCCTTGGCCCTCGTTATTACAAACCACCGAAACCGGGGAAAACCCCCTCTCTGACCCCCCCTTAATTACCACATTCCGTCCTCCCCCCCCCTCNTGCCATATCGCCTGTTTTGTCTTAAAACGCCCCTTCCTTGTCCTCCCTCACCCCCCTGTTTTCTGTTCATCATGGTAAAGGGTGCCGCCCCAATTATAATAACCCTATTACCCTCTGACGGCTATAGAATCCTATCAAACTACAATCTCACACCCTTGCTTCAAAAACACTTCTCTTGGCAGACTTATCTCTATTACCGGCCTCTATCTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9430#0 TCTTTCCCCTTCCTCCTCGGCCTCGGCGGGCGGCCTCCGATACCGATACGCCGTCGGAGT 60
consensus_9430#1 -------------------GCCTCGGCGGGCGGCCTCCGATACCGATACGCCGTCGGAGT 41
*****************************************
consensus_9430#0 CGATTCCGATTGCGATTGAAGGTCTGTTCTTCTATTTATTATAGTATATATAGATCCAGT 120
consensus_9430#1 CGATTCCGATTGCGATTGAAGGTAAAAGGAGAAAACAGAAACAGCCTG---GGATGTTGC 98
*********************** * * ** * *** *
consensus_9430#0 CGGCTGCTGCGTTGAAAACCAGGAGAGGATCAGATCATGGCGCAAATGGGCGTCATGGAC 180
consensus_9430#1 TGGGATCCTCAAGCAAAAGGAAGTCCGAAACTCCCTATTCTACAAAT--GTGGTGCTGCC 156
** * * **** * * * * * ** ***** * * * *
consensus_9430#0 GCTTCCC-TGTGTCCTCCTTTCCACGGCCGGTCCGTCGACAAGGGGACGCGGCGCAGGCC 239
consensus_9430#1 ACTGCCAACGAGGCACGGTGTGCAAAAACAACCGGATG-CGGAAGGAGGTAGCATGG--- 212
** ** * * * * * ** * * * * * *** * ** *
consensus_9430#0 AAGATGGGTACTCCT-CGACAAGCTCGCCTACTTCGCCGGCGCCGACGTCCGCAACGCCA 298
consensus_9430#1 AAGCTGAATTTTCAGATAATATGTTATTATAATAAGCTGGGATATGAGTA-ATAGTGGTA 271
*** ** * ** * * * * ** * ** ** ** * * *
consensus_9430#0 CCACTGCTACTTCCAAAACAAGGGAGGGCCATGAAATCCAGGTGACCCTGTGCACCGCCG 358
consensus_9430#1 ATTATCATATTTTATTGATATAGTGTGATCCCGTA-TCAAGA-----CTATGATCCCTCG 325
* ** ** * * * * * * * ** ** ** ** ** **
consensus_9430#0 CCCAGCCGCAGCTCGTCTCCTACGTGTGCGTCCACTCTCCCACCCTCAATCCTGCATCCG 418
consensus_9430#1 GTTATTCTCT-CCTATGTCGTGCTTGTATGTGCAAGGGACGACCTGAA----TGAACTCA 380
* * * * * ** * * *** ** ** * *** * ** * *
consensus_9430#0 ATGACTACGCCATGGAGCCCCAGATCATCGCCGCACACGATGACCTCCTCCTCATCCGCC 478
consensus_9430#1 GTTCAGACATTTTTCTGTCCT--ATCTATGTGGTACACT-TGTTTTATCACTCTGCTGAG 437
* ** * * ** *** * * **** ** * *** * *
consensus_9430#0 TCATCCTCGGCAGAGGTAACAGGTTTACTGTATCCCTCGCCGACTACTTCGTTTACCAGG 538
consensus_9430#1 T-GTGTTCGGGAAAAAAAAAAAAAAAAAAAAGTAAATGAAAAAAAA--------AAAAAA 488
* * **** * * ** * * * * * * * *
consensus_9430#0 CCTCCATTGCTGATGATATCCCGCCGTCTCTCACGCGCATCACCCATCCCGGCCCTATGA 598
consensus_9430#1 AAAAAAAAAAAAAAAAAAAAAAAATAAATTTTAGGGGGGGGCCCCGTCCC--CCCAAATT 546
* * * * * * * * * *** **** *** *
consensus_9430#0 TCACCTTCACTAACCACGAGGTCGCCATCCTGCACTACATCCCTGAGGACACCCACCACC 658
consensus_9430#1 GCTCCTCTATGGGTTATTGGCTTGTGACCCCCCCCC---CCCTTGGCCCTCGTTATTACA 603
* *** * * * * * * ** * * ** ** * **
consensus_9430#0 ACCCGTATAGGCCACCAGGGGAATACAAGCTCCATCTCTACCACTCCCACACTCAGCAAT 718
consensus_9430#1 AACCACCGAAACC----GGGGAA----AACCCCCTCTCTGACCCCCCCTTAATTACCACA 655
* ** * ** ****** * * ** ***** * * *** * * * **
consensus_9430#0 GGACCACCACCCACTTCAACCTTGCGGCAACAATGCCAGATCTCTCTCCCTTCCACCATC 778
consensus_9430#1 ----TTCCGTCCTCCCCCCCCCTCNTGCCATATCGCCTGTTTTGTCTTAAAACGCCCCTT 711
** ** * * ** * ** * * *** * * * *** * ** *
consensus_9430#0 GCACAACCAACGTCATCAACCTCACTCACCAATCTCCTGGTCTCATGGCTTTCGTCGACC 838
consensus_9430#1 CCTTGTCCTCCCTCACCCCCCT-GTTTTCTGTTCATCATGGTAAAGGGTGCCGCCCCAAT 770
* ** * *** * *** * * ** * * * ** * *
consensus_9430#0 TCTGGCAGGGCCTCTTGCTCATCAATGTGCTTGACAAGGTA-CAGCCTGCCGCACCTCGC 897
consensus_9430#1 TATAATAAC-CCTATTACCCTCTGACGGCTATAGAATCCTATCAAACTACA--ATCTCAC 827
* * * *** ** * * * * * * ** ** ** * * *** *
consensus_9430#0 TACATCCCATTGCCACCACCGCTCA-AGCAGGGTAAAGTC-ATTTCCGGCAGAGTCGACC 955
consensus_9430#1 ACCCTTGCTTCAAAAACACTTCTCTTGGCAGACTTATCTCTATTACCGGCC---TCTATC 884
* * * * * *** *** **** * * ** *** ***** ** * *
consensus_9430#0 CAACAGATGTTCGTGACATTGCCGTCGACGCAAAAGGTCACATCAACTTTGTTGAGCTGG 1015
consensus_9430#1 TCA--------------------------------------------------------- 887
*
consensus_9430#0 AGGTCGATGCTATTCAACACGAGTCGGATAGAACCGGTTACATCTCTCAGGGCTGGACGG 1075
consensus_9430#1 ------------------------------------------------------------
consensus_9430#0 TTGCCAAATGGAGCTGCAGTAATACTGAATCCGACGATTGCTGCTGGCACATGGACTGCA 1135
consensus_9430#1 ------------------------------------------------------------
consensus_9430#0 AGCTCAACGCTTCTGACATCTCTCATCTGATGCCTCCTGAGCTACCCAACTACTGTCACC 1195
consensus_9430#1 ------------------------------------------------------------
consensus_9430#0 CAACCCCAACCTTGGAGAGACTCCACATAGGTCATCCCTTGCTCAGTTTGGACAACAATG 1255
consensus_9430#1 ------------------------------------------------------------
consensus_9430#0 GCGATGTTGTTTACTTCATGGCCAAGGTCGACCACCGTGATTACAAGGCATGGGTCATTC 1315
consensus_9430#1 ------------------------------------------------------------
consensus_9430#0 CTGTTGACATGAGGAAAAGGCTCATACATGAACCAGCTGTTTTTGAGGGTGCTCCGCGTA 1375
consensus_9430#1 ------------------------------------------------------------
consensus_9430#0 CTCTTGGCATAGGTTCCACCTTCATACAAACCACCATCTCCAACTATCCACAACCTGCTC 1435
consensus_9430#1 ------------------------------------------------------------
consensus_9430#0 CAGGTAAAAAGAGAAAACAGAAACAGCCTGGGATGTTGCTGGGATCCTCAAGCAAAAGGA 1495
consensus_9430#1 ------------------------------------------------------------
consensus_9430#0 AGTCCGAAACTCCCTATTTGACAAATGTGGTGCTGCCACTGCCAACGAGGCACGGTGTGC 1555
consensus_9430#1 ------------------------------------------------------------
consensus_9430#0 AAAAACAACCGGATGCGGAAGGAGGTAGCATGGAAGCTGAATTTTCAGATAATATGTTAT 1615
consensus_9430#1 ------------------------------------------------------------
consensus_9430#0 TATAATAAGCTGGGATATGAGTAATAGTGGTAATTATCATATTTTATTGATATAGTGTGA 1675
consensus_9430#1 ------------------------------------------------------------
consensus_9430#0 TCCCGTATCAAGACTATGATCCCTCGGTTATTCTCTCCTATGTCGTGCTTGTATGTGTAA 1735
consensus_9430#1 ------------------------------------------------------------
consensus_9430#0 GGGACGACCTGAATGAACTCAGTTCAGACATTTTTCTGTCCTATCTATGTGGTACACTTG 1795
consensus_9430#1 ------------------------------------------------------------
consensus_9430#0 TTTTATCAAAAAAAAAAAA 1814
consensus_9430#1 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||